Incidental Mutation 'R4968:St6galnac6'
ID 384165
Institutional Source Beutler Lab
Gene Symbol St6galnac6
Ensembl Gene ENSMUSG00000026811
Gene Name ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
Synonyms ST6GalNAcVI, Siat7f
MMRRC Submission 042564-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.095) question?
Stock # R4968 (G1)
Quality Score 109
Status Not validated
Chromosome 2
Chromosomal Location 32489721-32510818 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 32498098 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Proline to Serine at position 6 (P6S)
Ref Sequence ENSEMBL: ENSMUSP00000138916 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000072111] [ENSMUST00000081879] [ENSMUST00000095044] [ENSMUST00000095045] [ENSMUST00000113290] [ENSMUST00000126636] [ENSMUST00000128811] [ENSMUST00000183538] [ENSMUST00000129165] [ENSMUST00000131229] [ENSMUST00000143625] [ENSMUST00000140983]
AlphaFold Q9JM95
Predicted Effect probably benign
Transcript: ENSMUST00000072111
AA Change: P6S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000071983
Gene: ENSMUSG00000026811
AA Change: P6S

DomainStartEndE-ValueType
low complexity region 15 27 N/A INTRINSIC
Pfam:Glyco_transf_29 55 328 2.5e-38 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000081879
SMART Domains Protein: ENSMUSP00000080555
Gene: ENSMUSG00000026811

DomainStartEndE-ValueType
low complexity region 17 29 N/A INTRINSIC
Pfam:Glyco_transf_29 62 329 2.1e-35 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000095044
AA Change: P6S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000092654
Gene: ENSMUSG00000026811
AA Change: P6S

DomainStartEndE-ValueType
low complexity region 15 27 N/A INTRINSIC
Pfam:Glyco_transf_29 55 328 2.5e-38 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000095045
SMART Domains Protein: ENSMUSP00000092655
Gene: ENSMUSG00000026811

DomainStartEndE-ValueType
Pfam:Glyco_transf_29 41 307 1.8e-36 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000113290
SMART Domains Protein: ENSMUSP00000108915
Gene: ENSMUSG00000026811

DomainStartEndE-ValueType
Pfam:Glyco_transf_29 21 294 1.7e-38 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000126636
Predicted Effect probably benign
Transcript: ENSMUST00000128811
SMART Domains Protein: ENSMUSP00000118893
Gene: ENSMUSG00000026811

DomainStartEndE-ValueType
Pfam:Glyco_transf_29 20 108 7e-13 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000149220
Predicted Effect probably benign
Transcript: ENSMUST00000183538
AA Change: P6S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000138916
Gene: ENSMUSG00000026811
AA Change: P6S

DomainStartEndE-ValueType
low complexity region 15 27 N/A INTRINSIC
Pfam:Glyco_transf_29 55 232 4.8e-24 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000129165
Predicted Effect probably benign
Transcript: ENSMUST00000131229
SMART Domains Protein: ENSMUSP00000115430
Gene: ENSMUSG00000026811

DomainStartEndE-ValueType
Pfam:Glyco_transf_29 35 176 3.3e-23 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000143625
Predicted Effect probably benign
Transcript: ENSMUST00000140983
SMART Domains Protein: ENSMUSP00000114934
Gene: ENSMUSG00000026811

DomainStartEndE-ValueType
Pfam:Glyco_transf_29 21 229 7.3e-33 PFAM
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.4%
  • 10x: 96.7%
  • 20x: 93.6%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] ST6GALNAC6 belongs to a family of sialyltransferases that modify proteins and ceramides on the cell surface to alter cell-cell or cell-extracellular matrix interactions (Tsuchida et al., 2003 [PubMed 12668675]).[supplied by OMIM, Mar 2008]
Allele List at MGI
Other mutations in this stock
Total: 69 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2810021J22Rik A T 11: 58,769,616 (GRCm39) K53* probably null Het
4921513D11Rik T C 17: 79,935,651 (GRCm39) S255P probably benign Het
Ace A G 11: 105,872,679 (GRCm39) N367S possibly damaging Het
Agl A T 3: 116,582,175 (GRCm39) N282K probably benign Het
Ahnak C A 19: 8,992,464 (GRCm39) P4583T probably damaging Het
Alpi T C 1: 87,029,247 (GRCm39) D4G probably benign Het
Anks6 C T 4: 47,030,795 (GRCm39) G601S probably damaging Het
Aplnr T C 2: 84,967,289 (GRCm39) Y105H probably damaging Het
Arhgap9 G A 10: 127,162,875 (GRCm39) R395K possibly damaging Het
Asah1 A G 8: 41,807,067 (GRCm39) M119T Het
Atp5f1b T C 10: 127,919,856 (GRCm39) F75L probably damaging Het
B4galt6 G T 18: 20,861,026 (GRCm39) N75K possibly damaging Het
Bco1 A T 8: 117,857,833 (GRCm39) H486L probably benign Het
Btaf1 T A 19: 36,947,351 (GRCm39) L480Q probably null Het
Ccdc34 G T 2: 109,871,078 (GRCm39) probably null Het
Cdh19 T C 1: 110,852,958 (GRCm39) S326G probably benign Het
Cep89 A G 7: 35,109,055 (GRCm39) D178G possibly damaging Het
Cyp11b2 A T 15: 74,725,854 (GRCm39) probably null Het
Cyp21a1 A G 17: 35,022,383 (GRCm39) I157T possibly damaging Het
Dcbld2 A G 16: 58,245,074 (GRCm39) D116G probably damaging Het
Ddx5 T C 11: 106,674,953 (GRCm39) Q377R probably damaging Het
Deup1 T C 9: 15,503,724 (GRCm39) D279G probably damaging Het
F11 G A 8: 45,698,770 (GRCm39) A458V probably benign Het
Fhad1 C A 4: 141,645,618 (GRCm39) G326W probably damaging Het
Fhit C T 14: 10,421,522 (GRCm38) V26M probably damaging Het
Gjb5 A T 4: 127,250,015 (GRCm39) V43E probably damaging Het
Grtp1 A T 8: 13,242,184 (GRCm39) I75N probably damaging Het
Hmcn1 A G 1: 150,533,221 (GRCm39) I3022T possibly damaging Het
Hsp90ab1 T C 17: 45,881,962 (GRCm39) T166A probably benign Het
Ift70b T C 2: 75,768,391 (GRCm39) I121V probably benign Het
Iho1 C T 9: 108,289,713 (GRCm39) V170M probably benign Het
Ikbke GCC G 1: 131,203,004 (GRCm39) probably null Het
Kcnk10 T C 12: 98,401,161 (GRCm39) I491V probably benign Het
Kcp A T 6: 29,497,628 (GRCm39) C519* probably null Het
Lcmt2 T C 2: 120,970,217 (GRCm39) T69A probably benign Het
Lmf1 A G 17: 25,804,592 (GRCm39) Y90C probably damaging Het
Lpp A G 16: 24,798,064 (GRCm39) D612G probably damaging Het
Lrfn5 C A 12: 61,886,461 (GRCm39) S83Y probably damaging Het
Lrp1b T C 2: 40,592,719 (GRCm39) probably null Het
Lrp1b C T 2: 41,679,074 (GRCm39) C6Y probably damaging Het
Lrrc8c A G 5: 105,754,993 (GRCm39) D256G probably damaging Het
Mphosph10 A G 7: 64,032,656 (GRCm39) Y478H probably damaging Het
Mpp2 T C 11: 101,955,124 (GRCm39) H167R probably benign Het
Mtss1 A G 15: 58,815,767 (GRCm39) S598P probably damaging Het
Myh10 A G 11: 68,684,049 (GRCm39) E1154G probably damaging Het
Myo10 T C 15: 25,808,270 (GRCm39) V1218A probably damaging Het
Myo19 A G 11: 84,792,328 (GRCm39) K599R probably damaging Het
Neurl4 T C 11: 69,798,134 (GRCm39) M771T probably damaging Het
Nlrc4 A G 17: 74,753,936 (GRCm39) V149A probably benign Het
Nup133 A T 8: 124,641,935 (GRCm39) S843T probably benign Het
Or2y1c T C 11: 49,361,358 (GRCm39) C127R probably damaging Het
Or51k1 T C 7: 103,661,777 (GRCm39) N44S probably damaging Het
P3h2 A G 16: 25,811,412 (GRCm39) probably null Het
Piezo2 A T 18: 63,278,042 (GRCm39) Y287* probably null Het
Prob1 T C 18: 35,785,605 (GRCm39) Y883C probably damaging Het
Pxdn T A 12: 30,050,011 (GRCm39) H506Q probably benign Het
Ripor3 T C 2: 167,827,037 (GRCm39) D658G probably benign Het
Rufy1 T A 11: 50,301,434 (GRCm39) I333L probably benign Het
Selenok T A 14: 29,692,064 (GRCm39) V34E probably benign Het
Selplg T C 5: 113,957,787 (GRCm39) E173G possibly damaging Het
Septin10 A G 10: 59,016,943 (GRCm39) F194L probably damaging Het
Sptbn2 A T 19: 4,779,230 (GRCm39) probably null Het
Syngr2 T C 11: 117,704,296 (GRCm39) Y194H probably damaging Het
Thbs4 A G 13: 92,894,576 (GRCm39) I649T possibly damaging Het
Triobp T A 15: 78,850,816 (GRCm39) N323K probably benign Het
Tuba8 T A 6: 121,197,548 (GRCm39) L70Q probably damaging Het
Vmn2r61 A G 7: 41,949,478 (GRCm39) T633A probably benign Het
Zfp280b G T 10: 75,875,188 (GRCm39) V356L probably damaging Het
Zswim4 A T 8: 84,944,001 (GRCm39) V746D probably benign Het
Other mutations in St6galnac6
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02736:St6galnac6 APN 2 32,504,983 (GRCm39) missense probably benign 0.04
R0097:St6galnac6 UTSW 2 32,489,814 (GRCm39) missense probably damaging 0.99
R1547:St6galnac6 UTSW 2 32,504,977 (GRCm39) missense possibly damaging 0.75
R1654:St6galnac6 UTSW 2 32,509,521 (GRCm39) missense probably damaging 1.00
R4385:St6galnac6 UTSW 2 32,505,036 (GRCm39) missense possibly damaging 0.84
R4744:St6galnac6 UTSW 2 32,508,555 (GRCm39) missense probably damaging 1.00
R5169:St6galnac6 UTSW 2 32,504,857 (GRCm39) missense possibly damaging 0.91
R6037:St6galnac6 UTSW 2 32,502,240 (GRCm39) missense probably damaging 1.00
R6037:St6galnac6 UTSW 2 32,502,240 (GRCm39) missense probably damaging 1.00
R7883:St6galnac6 UTSW 2 32,504,941 (GRCm39) missense probably benign 0.02
R8445:St6galnac6 UTSW 2 32,498,532 (GRCm39) intron probably benign
R8542:St6galnac6 UTSW 2 32,509,513 (GRCm39) missense probably damaging 1.00
R9141:St6galnac6 UTSW 2 32,505,094 (GRCm39) missense probably damaging 0.99
R9299:St6galnac6 UTSW 2 32,502,345 (GRCm39) missense probably benign 0.00
R9426:St6galnac6 UTSW 2 32,505,094 (GRCm39) missense probably damaging 0.99
R9753:St6galnac6 UTSW 2 32,502,261 (GRCm39) missense probably benign 0.01
Predicted Primers PCR Primer
(F):5'- CCGGAGCATGTTTCGTAATATAAGG -3'
(R):5'- TCCAGACACTTGGAGCACTC -3'

Sequencing Primer
(F):5'- GCATGTTTCGTAATATAAGGGAAGTC -3'
(R):5'- AGCACTCCAGGTCCCAG -3'
Posted On 2016-04-27