Mutagenetix > Incidental Mutation

Incidental Mutation 'R4972:Swt1'

384487

Institutional Source

Beutler Lab

Gene Symbol

Swt1

Ensembl Gene

ENSMUSG00000052748

Gene Name

SWT1 RNA endoribonuclease homolog (S. cerevisiae)

Synonyms

MMRRC Submission

042567-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.167) question?

Stock #

R4972 (G1)

Quality Score

222

Status

Validated

Chromosome

Chromosomal Location

151367699-151428455 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 151423542 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Serine to Glycine at position 7 (S7G)

Ref Sequence

ENSEMBL: ENSMUSP00000107514 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000064771] [ENSMUST00000065625] [ENSMUST00000111883]

AlphaFold

Q9DBQ9

Predicted Effect

probably benign
Transcript: ENSMUST00000064771
AA Change: S7G

PolyPhen 2 Score 0.215 (Sensitivity: 0.92; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000067516
Gene: ENSMUSG00000052748
AA Change: S7G

Domain	Start	End	E-Value	Type
low complexity region	186	206	N/A	INTRINSIC
low complexity region	231	242	N/A	INTRINSIC
low complexity region	258	269	N/A	INTRINSIC
PINc	395	522	1.94e-9	SMART
low complexity region	783	793	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000065625

SMART Domains

Protein: ENSMUSP00000068309
Gene: ENSMUSG00000053286

Domain	Start	End	E-Value	Type
low complexity region	5	18	N/A	INTRINSIC
low complexity region	25	70	N/A	INTRINSIC
ZnF_C2H2	116	142	7.49e0	SMART
ZnF_C2H2	181	203	2.49e-1	SMART
Pfam:TRM	220	563	6.9e-60	PFAM
Pfam:TRM	595	684	6.8e-12	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000111883
AA Change: S7G

PolyPhen 2 Score 0.215 (Sensitivity: 0.92; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000107514
Gene: ENSMUSG00000052748
AA Change: S7G

Domain	Start	End	E-Value	Type
low complexity region	186	206	N/A	INTRINSIC
low complexity region	231	242	N/A	INTRINSIC
low complexity region	258	269	N/A	INTRINSIC
PINc	395	522	1.94e-9	SMART

Predicted Effect

unknown
Transcript: ENSMUST00000129939
AA Change: S5G

SMART Domains

Protein: ENSMUSP00000120483
Gene: ENSMUSG00000052748
AA Change: S5G

Domain	Start	End	E-Value	Type
PINc	146	245	6.78e-1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131312

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000185247

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000188179

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.2%
10x: 96.0%
20x: 91.2%

Validation Efficiency

93% (82/88)

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3425401B19Rik	A	T	14: 32,661,404	I868N	possibly damaging	Het
A730013G03Rik	C	G	1: 192,833,773		noncoding transcript	Het
Actl11	A	G	9: 107,929,956	T493A	probably benign	Het
Actn1	T	C	12: 80,173,039	D686G	probably benign	Het
Adamts1	G	A	16: 85,795,945	T525I	probably damaging	Het
Adcy10	T	A	1: 165,556,862	L1064H	probably damaging	Het
AI661453	A	T	17: 47,466,399		probably benign	Het
Apba1	T	A	19: 23,912,536	S433T	probably benign	Het
Arid4b	T	A	13: 14,160,272	N355K	probably benign	Het
Bsn	A	T	9: 108,115,178	M1125K	probably damaging	Het
C2cd5	A	T	6: 143,013,224	M1003K	probably damaging	Het
Ccdc18	A	G	5: 108,192,003	M805V	probably benign	Het
Cep89	T	G	7: 35,432,552	L637R	probably damaging	Het
Col24a1	A	T	3: 145,509,684	I1444F	probably benign	Het
Commd4	A	T	9: 57,155,448	S175T	probably benign	Het
Coq7	A	G	7: 118,510,117	V236A	unknown	Het
Dctn2	C	T	10: 127,276,703	R176C	probably damaging	Het
Ddx31	T	C	2: 28,860,770	F389L	probably damaging	Het
Dgkz	C	T	2: 91,945,702	R72H	probably benign	Het
Dpysl4	A	G	7: 139,090,290	D24G	probably damaging	Het
Dydc1	A	G	14: 41,082,338	T106A	probably benign	Het
F13b	A	G	1: 139,510,923	Y355C	probably damaging	Het
Fcrl5	A	G	3: 87,454,650	M407V	probably benign	Het
Fzd5	C	A	1: 64,736,012	V197L	probably benign	Het
Galnt16	G	T	12: 80,572,329	E70*	probably null	Het
Gm8979	T	C	7: 106,083,314		noncoding transcript	Het
Gpr171	A	T	3: 59,097,965	F130I	probably damaging	Het
Grin3a	T	C	4: 49,770,484	N763D	probably damaging	Het
Gsta2	A	T	9: 78,337,679	M51K	probably damaging	Het
Hacd3	A	T	9: 64,990,436	I298N	probably damaging	Het
Il18r1	C	T	1: 40,491,064	P317L	probably benign	Het
Iscu	T	A	5: 113,776,976		probably benign	Het
Kif6	A	G	17: 49,707,619	D250G	probably damaging	Het
Klk14	G	A	7: 43,692,077	C51Y	probably damaging	Het
Lcn6	T	A	2: 25,680,067	C82S	probably damaging	Het
Mob4	C	G	1: 55,151,002	L135V	possibly damaging	Het
Mpzl3	T	A	9: 45,062,256		probably benign	Het
Mvp	T	C	7: 126,989,798	D599G	probably damaging	Het
Myo1a	T	C	10: 127,716,309	Y766H	probably benign	Het
Myo5b	A	G	18: 74,627,193	H260R	probably damaging	Het
Nbea	C	T	3: 56,085,246	R313H	probably damaging	Het
Necab1	T	A	4: 14,978,216	D211V	probably damaging	Het
Nefl	G	T	14: 68,086,763		probably benign	Het
Nfx1	T	A	4: 40,976,375	D16E	probably benign	Het
Nlrp9a	G	T	7: 26,570,539	C797F	probably damaging	Het
Olfr1280	T	A	2: 111,315,818	V113E	probably damaging	Het
Olfr467	A	G	7: 107,814,746	Q56R	probably benign	Het
Pde6b	A	G	5: 108,425,264	D500G	probably benign	Het
Pgs1	T	C	11: 118,005,893		probably null	Het
Polr3b	T	A	10: 84,638,124	I189N	probably damaging	Het
Ppwd1	A	T	13: 104,220,108	S300T	probably benign	Het
Prl2c2	A	C	13: 13,002,170	N55K	possibly damaging	Het
Prpf19	C	T	19: 10,899,345		probably benign	Het
Prph2	G	T	17: 46,910,807	L37F	possibly damaging	Het
Ptprg	G	T	14: 12,226,427	R565L	possibly damaging	Het
Rab8a	C	T	8: 72,171,275	T74M	probably damaging	Het
Rexo1	A	T	10: 80,549,693	F510L	probably damaging	Het
Rexo2	G	T	9: 48,479,389	T51K	probably damaging	Het
Sh3d21	T	C	4: 126,152,416	K147R	possibly damaging	Het
Skint6	A	G	4: 112,835,068	I1062T	probably benign	Het
Spag16	C	T	1: 70,724,928	R636W	probably damaging	Het
Spata16	T	C	3: 26,840,723	I307T	possibly damaging	Het
Speer4f2	T	G	5: 17,374,425	I74S	probably benign	Het
Svep1	T	A	4: 58,087,778	Y1767F	possibly damaging	Het
Tex9	A	G	9: 72,478,338		probably null	Het
Thsd7b	C	A	1: 130,188,572	P1354H	probably damaging	Het
Ticrr	A	G	7: 79,669,668	D467G	probably damaging	Het
Tmco5b	A	C	2: 113,296,993	D303A	probably damaging	Het
Trpm7	A	G	2: 126,824,058	V876A	probably damaging	Het
Ttc21a	G	A	9: 119,944,961	E245K	probably benign	Het
Vezt	C	T	10: 94,000,350		probably null	Het
Zscan20	G	A	4: 128,592,359	P183S	probably benign	Het

Other mutations in Swt1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01109:Swt1	APN	1	151411139	missense	probably damaging	0.99
IGL01622:Swt1	APN	1	151411009	missense	probably benign	0.01
IGL01623:Swt1	APN	1	151411009	missense	probably benign	0.01
IGL01672:Swt1	APN	1	151394608	critical splice donor site	probably null
IGL01693:Swt1	APN	1	151422104	missense	probably benign	0.02
IGL02203:Swt1	APN	1	151370626	missense	probably benign	0.01
IGL03223:Swt1	APN	1	151379419	missense	possibly damaging	0.80
R0124:Swt1	UTSW	1	151391529	missense	probably damaging	1.00
R0496:Swt1	UTSW	1	151411270	missense	probably benign
R1037:Swt1	UTSW	1	151370569	splice site	probably benign
R1171:Swt1	UTSW	1	151405521	missense	probably damaging	1.00
R1270:Swt1	UTSW	1	151384391	missense	probably benign	0.00
R1883:Swt1	UTSW	1	151423533	nonsense	probably null
R2051:Swt1	UTSW	1	151372330	missense	probably damaging	1.00
R2110:Swt1	UTSW	1	151403885	missense	probably damaging	0.97
R2185:Swt1	UTSW	1	151384468	missense	probably damaging	1.00
R3688:Swt1	UTSW	1	151391489	missense	probably damaging	0.99
R3785:Swt1	UTSW	1	151379404	missense	probably benign	0.03
R4074:Swt1	UTSW	1	151394769	missense	probably benign
R4157:Swt1	UTSW	1	151403044	missense	probably damaging	1.00
R4660:Swt1	UTSW	1	151407597	missense	probably benign	0.18
R4761:Swt1	UTSW	1	151401102	missense	probably benign	0.43
R5141:Swt1	UTSW	1	151411394	missense	probably benign	0.04
R5227:Swt1	UTSW	1	151402976	nonsense	probably null
R5400:Swt1	UTSW	1	151412834	missense	probably benign	0.00
R5580:Swt1	UTSW	1	151384455	missense	probably benign	0.00
R5912:Swt1	UTSW	1	151411409	missense	probably damaging	1.00
R5945:Swt1	UTSW	1	151411170	missense	probably benign	0.01
R5973:Swt1	UTSW	1	151402949	splice site	probably null
R5979:Swt1	UTSW	1	151407588	missense	possibly damaging	0.94
R6242:Swt1	UTSW	1	151407614	missense	probably benign	0.41
R6283:Swt1	UTSW	1	151384333	missense	possibly damaging	0.78
R6951:Swt1	UTSW	1	151397268	missense	possibly damaging	0.88
R7009:Swt1	UTSW	1	151370630	missense	possibly damaging	0.94
R7165:Swt1	UTSW	1	151388677	missense	probably damaging	1.00
R7214:Swt1	UTSW	1	151394613	missense	possibly damaging	0.63
R7403:Swt1	UTSW	1	151388693	missense	probably benign	0.01
R7439:Swt1	UTSW	1	151411064	missense	probably benign	0.04
R7441:Swt1	UTSW	1	151411064	missense	probably benign	0.04
R7571:Swt1	UTSW	1	151394719	missense	probably benign	0.00
R8028:Swt1	UTSW	1	151384497	missense	probably benign	0.26
R8225:Swt1	UTSW	1	151422108	missense	possibly damaging	0.96
R9075:Swt1	UTSW	1	151370494	intron	probably benign
R9100:Swt1	UTSW	1	151423505	critical splice donor site	probably null
R9135:Swt1	UTSW	1	151368488	missense	possibly damaging	0.61
R9291:Swt1	UTSW	1	151410943	missense	probably damaging	0.96
R9292:Swt1	UTSW	1	151403036	missense	probably benign	0.00
R9368:Swt1	UTSW	1	151411016	missense	possibly damaging	0.90
X0062:Swt1	UTSW	1	151411439	missense	probably benign	0.43
Z1176:Swt1	UTSW	1	151388685	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- ACTGGGTGAATTCATTTTCCTCAG -3'
(R):5'- CAGGGGTAATTGAAATTACTTGGC -3'

Sequencing Primer
(F):5'- GGTGAATTCATTTTCCTCAGTGTATC -3'
(R):5'- GAAATTACTTGGCTTATAGCGTTTG -3'

Posted On

2016-04-27