Mutagenetix > Incidental Mutation

Incidental Mutation 'R4972:Zscan20'

384509

Institutional Source

Beutler Lab

Gene Symbol

Zscan20

Ensembl Gene

ENSMUSG00000061894

Gene Name

zinc finger and SCAN domains 20

Synonyms

Zfp31

MMRRC Submission

042567-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.270) question?

Stock #

R4972 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

128583539-128610098 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 128592359 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Proline to Serine at position 183 (P183S)

Ref Sequence

ENSEMBL: ENSMUSP00000119338 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000097877] [ENSMUST00000135309]

AlphaFold

B2KFW1

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000084276

Predicted Effect

probably benign
Transcript: ENSMUST00000097877
AA Change: P183S

PolyPhen 2 Score 0.055 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000095487
Gene: ENSMUSG00000061894
AA Change: P183S

Domain	Start	End	E-Value	Type
SCAN	41	147	1.31e-54	SMART
low complexity region	275	284	N/A	INTRINSIC
SANT	314	378	8.04e-1	SMART
SANT	475	539	4.85e-3	SMART
ZnF_C2H2	725	747	2.61e1	SMART
ZnF_C2H2	753	775	9.88e-5	SMART
ZnF_C2H2	781	803	1.12e-3	SMART
ZnF_C2H2	862	884	3.21e-4	SMART
ZnF_C2H2	890	912	1.04e-3	SMART
ZnF_C2H2	918	940	1.56e-2	SMART
ZnF_C2H2	946	968	2.84e-5	SMART
ZnF_C2H2	974	996	4.54e-4	SMART
ZnF_C2H2	1002	1024	1.47e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000135309
AA Change: P183S

PolyPhen 2 Score 0.394 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000119338
Gene: ENSMUSG00000061894
AA Change: P183S

Domain	Start	End	E-Value	Type
SCAN	41	147	1.31e-54	SMART
low complexity region	279	293	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.2%
10x: 96.0%
20x: 91.2%

Validation Efficiency

93% (82/88)

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3425401B19Rik	A	T	14: 32,661,404	I868N	possibly damaging	Het
A730013G03Rik	C	G	1: 192,833,773		noncoding transcript	Het
Actl11	A	G	9: 107,929,956	T493A	probably benign	Het
Actn1	T	C	12: 80,173,039	D686G	probably benign	Het
Adamts1	G	A	16: 85,795,945	T525I	probably damaging	Het
Adcy10	T	A	1: 165,556,862	L1064H	probably damaging	Het
AI661453	A	T	17: 47,466,399		probably benign	Het
Apba1	T	A	19: 23,912,536	S433T	probably benign	Het
Arid4b	T	A	13: 14,160,272	N355K	probably benign	Het
Bsn	A	T	9: 108,115,178	M1125K	probably damaging	Het
C2cd5	A	T	6: 143,013,224	M1003K	probably damaging	Het
Ccdc18	A	G	5: 108,192,003	M805V	probably benign	Het
Cep89	T	G	7: 35,432,552	L637R	probably damaging	Het
Col24a1	A	T	3: 145,509,684	I1444F	probably benign	Het
Commd4	A	T	9: 57,155,448	S175T	probably benign	Het
Coq7	A	G	7: 118,510,117	V236A	unknown	Het
Dctn2	C	T	10: 127,276,703	R176C	probably damaging	Het
Ddx31	T	C	2: 28,860,770	F389L	probably damaging	Het
Dgkz	C	T	2: 91,945,702	R72H	probably benign	Het
Dpysl4	A	G	7: 139,090,290	D24G	probably damaging	Het
Dydc1	A	G	14: 41,082,338	T106A	probably benign	Het
F13b	A	G	1: 139,510,923	Y355C	probably damaging	Het
Fcrl5	A	G	3: 87,454,650	M407V	probably benign	Het
Fzd5	C	A	1: 64,736,012	V197L	probably benign	Het
Galnt16	G	T	12: 80,572,329	E70*	probably null	Het
Gm8979	T	C	7: 106,083,314		noncoding transcript	Het
Gpr171	A	T	3: 59,097,965	F130I	probably damaging	Het
Grin3a	T	C	4: 49,770,484	N763D	probably damaging	Het
Gsta2	A	T	9: 78,337,679	M51K	probably damaging	Het
Hacd3	A	T	9: 64,990,436	I298N	probably damaging	Het
Il18r1	C	T	1: 40,491,064	P317L	probably benign	Het
Iscu	T	A	5: 113,776,976		probably benign	Het
Kif6	A	G	17: 49,707,619	D250G	probably damaging	Het
Klk14	G	A	7: 43,692,077	C51Y	probably damaging	Het
Lcn6	T	A	2: 25,680,067	C82S	probably damaging	Het
Mob4	C	G	1: 55,151,002	L135V	possibly damaging	Het
Mpzl3	T	A	9: 45,062,256		probably benign	Het
Mvp	T	C	7: 126,989,798	D599G	probably damaging	Het
Myo1a	T	C	10: 127,716,309	Y766H	probably benign	Het
Myo5b	A	G	18: 74,627,193	H260R	probably damaging	Het
Nbea	C	T	3: 56,085,246	R313H	probably damaging	Het
Necab1	T	A	4: 14,978,216	D211V	probably damaging	Het
Nefl	G	T	14: 68,086,763		probably benign	Het
Nfx1	T	A	4: 40,976,375	D16E	probably benign	Het
Nlrp9a	G	T	7: 26,570,539	C797F	probably damaging	Het
Olfr1280	T	A	2: 111,315,818	V113E	probably damaging	Het
Olfr467	A	G	7: 107,814,746	Q56R	probably benign	Het
Pde6b	A	G	5: 108,425,264	D500G	probably benign	Het
Pgs1	T	C	11: 118,005,893		probably null	Het
Polr3b	T	A	10: 84,638,124	I189N	probably damaging	Het
Ppwd1	A	T	13: 104,220,108	S300T	probably benign	Het
Prl2c2	A	C	13: 13,002,170	N55K	possibly damaging	Het
Prpf19	C	T	19: 10,899,345		probably benign	Het
Prph2	G	T	17: 46,910,807	L37F	possibly damaging	Het
Ptprg	G	T	14: 12,226,427	R565L	possibly damaging	Het
Rab8a	C	T	8: 72,171,275	T74M	probably damaging	Het
Rexo1	A	T	10: 80,549,693	F510L	probably damaging	Het
Rexo2	G	T	9: 48,479,389	T51K	probably damaging	Het
Sh3d21	T	C	4: 126,152,416	K147R	possibly damaging	Het
Skint6	A	G	4: 112,835,068	I1062T	probably benign	Het
Spag16	C	T	1: 70,724,928	R636W	probably damaging	Het
Spata16	T	C	3: 26,840,723	I307T	possibly damaging	Het
Speer4f2	T	G	5: 17,374,425	I74S	probably benign	Het
Svep1	T	A	4: 58,087,778	Y1767F	possibly damaging	Het
Swt1	T	C	1: 151,423,542	S7G	probably benign	Het
Tex9	A	G	9: 72,478,338		probably null	Het
Thsd7b	C	A	1: 130,188,572	P1354H	probably damaging	Het
Ticrr	A	G	7: 79,669,668	D467G	probably damaging	Het
Tmco5b	A	C	2: 113,296,993	D303A	probably damaging	Het
Trpm7	A	G	2: 126,824,058	V876A	probably damaging	Het
Ttc21a	G	A	9: 119,944,961	E245K	probably benign	Het
Vezt	C	T	10: 94,000,350		probably null	Het

Other mutations in Zscan20

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00552:Zscan20	APN	4	128586635	missense	probably damaging	0.99
IGL01454:Zscan20	APN	4	128589541	missense	probably benign	0.01
IGL01934:Zscan20	APN	4	128592484	missense	possibly damaging	0.94
IGL02288:Zscan20	APN	4	128586643	missense	probably damaging	1.00
IGL02336:Zscan20	APN	4	128585794	missense	probably damaging	1.00
IGL02385:Zscan20	APN	4	128604599	missense	possibly damaging	0.66
IGL02437:Zscan20	APN	4	128588417	missense	probably damaging	1.00
IGL02450:Zscan20	APN	4	128586657	missense	probably damaging	0.99
R0034:Zscan20	UTSW	4	128585662	missense	probably damaging	0.96
R0034:Zscan20	UTSW	4	128585662	missense	probably damaging	0.96
R0070:Zscan20	UTSW	4	128585882	missense	possibly damaging	0.73
R0142:Zscan20	UTSW	4	128585837	missense	probably benign	0.38
R0496:Zscan20	UTSW	4	128591889	missense	probably benign	0.42
R0567:Zscan20	UTSW	4	128589450	critical splice donor site	probably null
R1333:Zscan20	UTSW	4	128588096	missense	possibly damaging	0.61
R1716:Zscan20	UTSW	4	128586541	missense	probably damaging	0.96
R2302:Zscan20	UTSW	4	128588264	missense	probably damaging	1.00
R3870:Zscan20	UTSW	4	128586425	missense	probably damaging	1.00
R4611:Zscan20	UTSW	4	128588106	missense	probably benign	0.00
R4884:Zscan20	UTSW	4	128588165	missense	possibly damaging	0.56
R5033:Zscan20	UTSW	4	128586128	missense	probably benign	0.01
R5160:Zscan20	UTSW	4	128592482	missense	possibly damaging	0.69
R5182:Zscan20	UTSW	4	128586711	missense	possibly damaging	0.71
R5214:Zscan20	UTSW	4	128588316	missense	probably benign	0.00
R5345:Zscan20	UTSW	4	128588121	missense	probably benign	0.04
R5863:Zscan20	UTSW	4	128586348	nonsense	probably null
R6217:Zscan20	UTSW	4	128604534	missense	probably damaging	1.00
R6597:Zscan20	UTSW	4	128585746	missense	probably damaging	0.96
R6751:Zscan20	UTSW	4	128585875	missense	probably damaging	1.00
R6852:Zscan20	UTSW	4	128589722	missense	probably damaging	1.00
R7172:Zscan20	UTSW	4	128585676	nonsense	probably null
R7338:Zscan20	UTSW	4	128588150	missense	probably benign
R7805:Zscan20	UTSW	4	128585806	missense	probably damaging	1.00
R8063:Zscan20	UTSW	4	128586235	missense	probably benign	0.01
R8244:Zscan20	UTSW	4	128585966	missense	probably benign	0.32
R8421:Zscan20	UTSW	4	128585827	missense	probably damaging	1.00
R8752:Zscan20	UTSW	4	128585687	missense	probably damaging	1.00
R8939:Zscan20	UTSW	4	128604522	missense	probably benign	0.00
R8971:Zscan20	UTSW	4	128586054	missense	probably damaging	1.00
R8971:Zscan20	UTSW	4	128586055	missense	probably damaging	1.00
R9149:Zscan20	UTSW	4	128588121	missense	probably benign	0.15
R9458:Zscan20	UTSW	4	128586846	critical splice acceptor site	probably null

Predicted Primers

PCR Primer
(F):5'- CAACCTTTGGCTCAATAACAGC -3'
(R):5'- TGGAACACGTTCACACTCAAGG -3'

Sequencing Primer
(F):5'- TTTGGCTCAATAACAGCATCCATC -3'
(R):5'- AGGTAACAGTCCTGTCCCATTGAG -3'

Posted On

2016-04-27