Mutagenetix > Incidental Mutation

Incidental Mutation 'R4972:Dpysl4'

384525

Institutional Source

Beutler Lab

Gene Symbol

Dpysl4

Ensembl Gene

ENSMUSG00000025478

Gene Name

dihydropyrimidinase-like 4

Synonyms

CRMP-3, Crmp3, DPY4, unc-33-like phosphoprotein 4, Drp-4, Ulip4

MMRRC Submission

042567-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.082) question?

Stock #

R4972 (G1)

Quality Score

179

Status

Validated

Chromosome

Chromosomal Location

138665917-138681711 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 138670206 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 24 (D24G)

Ref Sequence

ENSEMBL: ENSMUSP00000117764 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026551] [ENSMUST00000121184] [ENSMUST00000145499]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000026551
AA Change: D87G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000026551
Gene: ENSMUSG00000025478
AA Change: D87G

Domain	Start	End	E-Value	Type
Pfam:Amidohydro_1	64	453	4.5e-40	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000121184
AA Change: D108G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000112896
Gene: ENSMUSG00000025478
AA Change: D108G

Domain	Start	End	E-Value	Type
Pfam:Amidohydro_1	85	474	1.1e-41	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000122844

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139364

Predicted Effect

probably damaging
Transcript: ENSMUST00000145499
AA Change: D24G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000117764
Gene: ENSMUSG00000025478
AA Change: D24G

Domain	Start	End	E-Value	Type
Pfam:Amidohydro_1	1	148	2.7e-13	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154273

Meta Mutation Damage Score

0.9721

Coding Region Coverage

1x: 99.1%
3x: 98.2%
10x: 96.0%
20x: 91.2%

Validation Efficiency

93% (82/88)

MGI Phenotype

PHENOTYPE: Homozygous null mice exhibit abnormal neurite outgrowth and lamination in the hippocampus, altered dendrite arborization and spine morphology in hippocampal pyramidal cells, and impaired LTP induction in the CA1 region. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3425401B19Rik	A	T	14: 32,383,361 (GRCm39)	I868N	possibly damaging	Het
A730013G03Rik	C	G	1: 192,516,081 (GRCm39)		noncoding transcript	Het
Actl11	A	G	9: 107,807,155 (GRCm39)	T493A	probably benign	Het
Actn1	T	C	12: 80,219,813 (GRCm39)	D686G	probably benign	Het
Adamts1	G	A	16: 85,592,833 (GRCm39)	T525I	probably damaging	Het
Adcy10	T	A	1: 165,384,431 (GRCm39)	L1064H	probably damaging	Het
AI661453	A	T	17: 47,777,324 (GRCm39)		probably benign	Het
Apba1	T	A	19: 23,889,900 (GRCm39)	S433T	probably benign	Het
Arid4b	T	A	13: 14,334,857 (GRCm39)	N355K	probably benign	Het
Bsn	A	T	9: 107,992,377 (GRCm39)	M1125K	probably damaging	Het
C2cd5	A	T	6: 142,958,950 (GRCm39)	M1003K	probably damaging	Het
Ccdc18	A	G	5: 108,339,869 (GRCm39)	M805V	probably benign	Het
Cep89	T	G	7: 35,131,977 (GRCm39)	L637R	probably damaging	Het
Col24a1	A	T	3: 145,215,439 (GRCm39)	I1444F	probably benign	Het
Commd4	A	T	9: 57,062,732 (GRCm39)	S175T	probably benign	Het
Coq7	A	G	7: 118,109,340 (GRCm39)	V236A	unknown	Het
Dctn2	C	T	10: 127,112,572 (GRCm39)	R176C	probably damaging	Het
Ddx31	T	C	2: 28,750,782 (GRCm39)	F389L	probably damaging	Het
Dgkz	C	T	2: 91,776,047 (GRCm39)	R72H	probably benign	Het
Dydc1	A	G	14: 40,804,295 (GRCm39)	T106A	probably benign	Het
F13b	A	G	1: 139,438,661 (GRCm39)	Y355C	probably damaging	Het
Fcrl5	A	G	3: 87,361,957 (GRCm39)	M407V	probably benign	Het
Fzd5	C	A	1: 64,775,171 (GRCm39)	V197L	probably benign	Het
Galnt16	G	T	12: 80,619,103 (GRCm39)	E70*	probably null	Het
Gpr171	A	T	3: 59,005,386 (GRCm39)	F130I	probably damaging	Het
Grin3a	T	C	4: 49,770,484 (GRCm39)	N763D	probably damaging	Het
Gsta2	A	T	9: 78,244,961 (GRCm39)	M51K	probably damaging	Het
Gvin-ps3	T	C	7: 105,682,521 (GRCm39)		noncoding transcript	Het
Hacd3	A	T	9: 64,897,718 (GRCm39)	I298N	probably damaging	Het
Il18r1	C	T	1: 40,530,224 (GRCm39)	P317L	probably benign	Het
Iscu	T	A	5: 113,915,037 (GRCm39)		probably benign	Het
Kif6	A	G	17: 50,014,647 (GRCm39)	D250G	probably damaging	Het
Klk14	G	A	7: 43,341,501 (GRCm39)	C51Y	probably damaging	Het
Lcn6	T	A	2: 25,570,079 (GRCm39)	C82S	probably damaging	Het
Mob4	C	G	1: 55,190,161 (GRCm39)	L135V	possibly damaging	Het
Mpzl3	T	A	9: 44,973,554 (GRCm39)		probably benign	Het
Mvp	T	C	7: 126,588,970 (GRCm39)	D599G	probably damaging	Het
Myo1a	T	C	10: 127,552,178 (GRCm39)	Y766H	probably benign	Het
Myo5b	A	G	18: 74,760,264 (GRCm39)	H260R	probably damaging	Het
Nbea	C	T	3: 55,992,667 (GRCm39)	R313H	probably damaging	Het
Necab1	T	A	4: 14,978,216 (GRCm39)	D211V	probably damaging	Het
Nefl	G	T	14: 68,324,212 (GRCm39)		probably benign	Het
Nfx1	T	A	4: 40,976,375 (GRCm39)	D16E	probably benign	Het
Nlrp9a	G	T	7: 26,269,964 (GRCm39)	C797F	probably damaging	Het
Or4k36	T	A	2: 111,146,163 (GRCm39)	V113E	probably damaging	Het
Or5p5	A	G	7: 107,413,953 (GRCm39)	Q56R	probably benign	Het
Pde6b	A	G	5: 108,573,130 (GRCm39)	D500G	probably benign	Het
Pgs1	T	C	11: 117,896,719 (GRCm39)		probably null	Het
Polr3b	T	A	10: 84,473,988 (GRCm39)	I189N	probably damaging	Het
Ppwd1	A	T	13: 104,356,616 (GRCm39)	S300T	probably benign	Het
Prl2c2	A	C	13: 13,176,755 (GRCm39)	N55K	possibly damaging	Het
Prpf19	C	T	19: 10,876,709 (GRCm39)		probably benign	Het
Prph2	G	T	17: 47,221,733 (GRCm39)	L37F	possibly damaging	Het
Ptprg	G	T	14: 12,226,427 (GRCm38)	R565L	possibly damaging	Het
Rab8a	C	T	8: 72,925,119 (GRCm39)	T74M	probably damaging	Het
Rexo1	A	T	10: 80,385,527 (GRCm39)	F510L	probably damaging	Het
Rexo2	G	T	9: 48,390,689 (GRCm39)	T51K	probably damaging	Het
Sh3d21	T	C	4: 126,046,209 (GRCm39)	K147R	possibly damaging	Het
Skint6	A	G	4: 112,692,265 (GRCm39)	I1062T	probably benign	Het
Spag16	C	T	1: 70,764,087 (GRCm39)	R636W	probably damaging	Het
Spata16	T	C	3: 26,894,872 (GRCm39)	I307T	possibly damaging	Het
Speer4f2	T	G	5: 17,579,423 (GRCm39)	I74S	probably benign	Het
Svep1	T	A	4: 58,087,778 (GRCm39)	Y1767F	possibly damaging	Het
Swt1	T	C	1: 151,299,293 (GRCm39)	S7G	probably benign	Het
Tex9	A	G	9: 72,385,620 (GRCm39)		probably null	Het
Thsd7b	C	A	1: 130,116,309 (GRCm39)	P1354H	probably damaging	Het
Ticrr	A	G	7: 79,319,416 (GRCm39)	D467G	probably damaging	Het
Tmco5b	A	C	2: 113,127,338 (GRCm39)	D303A	probably damaging	Het
Trpm7	A	G	2: 126,665,978 (GRCm39)	V876A	probably damaging	Het
Ttc21a	G	A	9: 119,774,027 (GRCm39)	E245K	probably benign	Het
Vezt	C	T	10: 93,836,212 (GRCm39)		probably null	Het
Zscan20	G	A	4: 128,486,152 (GRCm39)	P183S	probably benign	Het

Other mutations in Dpysl4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00595:Dpysl4	APN	7	138,676,092 (GRCm39)	missense	probably damaging	1.00
IGL01836:Dpysl4	APN	7	138,676,089 (GRCm39)	missense	possibly damaging	0.96
IGL02447:Dpysl4	APN	7	138,678,516 (GRCm39)	missense	probably damaging	1.00
IGL02515:Dpysl4	APN	7	138,676,651 (GRCm39)	missense	probably damaging	1.00
IGL03169:Dpysl4	APN	7	138,679,826 (GRCm39)	splice site	probably null
PIT4382001:Dpysl4	UTSW	7	138,669,494 (GRCm39)	nonsense	probably null
R0012:Dpysl4	UTSW	7	138,677,799 (GRCm39)	missense	probably benign	0.32
R0012:Dpysl4	UTSW	7	138,677,799 (GRCm39)	missense	probably benign	0.32
R1624:Dpysl4	UTSW	7	138,669,469 (GRCm39)	missense	probably damaging	1.00
R1642:Dpysl4	UTSW	7	138,670,254 (GRCm39)	missense	probably damaging	1.00
R1860:Dpysl4	UTSW	7	138,670,215 (GRCm39)	missense	probably benign
R1885:Dpysl4	UTSW	7	138,676,723 (GRCm39)	missense	probably damaging	1.00
R1995:Dpysl4	UTSW	7	138,676,686 (GRCm39)	missense	probably benign
R2698:Dpysl4	UTSW	7	138,676,681 (GRCm39)	missense	probably damaging	1.00
R3032:Dpysl4	UTSW	7	138,676,152 (GRCm39)	missense	probably benign	0.01
R3762:Dpysl4	UTSW	7	138,676,672 (GRCm39)	missense	probably damaging	1.00
R3851:Dpysl4	UTSW	7	138,680,851 (GRCm39)	missense	probably damaging	1.00
R3852:Dpysl4	UTSW	7	138,680,851 (GRCm39)	missense	probably damaging	1.00
R4609:Dpysl4	UTSW	7	138,678,537 (GRCm39)	missense	probably damaging	0.99
R5538:Dpysl4	UTSW	7	138,671,906 (GRCm39)	missense	probably benign
R5608:Dpysl4	UTSW	7	138,678,459 (GRCm39)	missense	probably damaging	0.97
R5762:Dpysl4	UTSW	7	138,671,853 (GRCm39)	missense	probably benign
R5887:Dpysl4	UTSW	7	138,676,192 (GRCm39)	missense	possibly damaging	0.72
R6022:Dpysl4	UTSW	7	138,666,000 (GRCm39)	unclassified	probably benign
R6060:Dpysl4	UTSW	7	138,669,324 (GRCm39)	start codon destroyed	probably null
R6180:Dpysl4	UTSW	7	138,670,250 (GRCm39)	missense	probably damaging	1.00
R6328:Dpysl4	UTSW	7	138,679,734 (GRCm39)	missense	probably benign
R6809:Dpysl4	UTSW	7	138,673,576 (GRCm39)	missense	probably benign	0.19
R6949:Dpysl4	UTSW	7	138,671,915 (GRCm39)	missense	probably damaging	1.00
R7647:Dpysl4	UTSW	7	138,679,689 (GRCm39)	missense	possibly damaging	0.92
R7695:Dpysl4	UTSW	7	138,666,039 (GRCm39)	start codon destroyed	probably null	0.00
R7751:Dpysl4	UTSW	7	138,669,456 (GRCm39)	missense	probably benign
R8129:Dpysl4	UTSW	7	138,666,076 (GRCm39)	missense	probably benign	0.04
R9538:Dpysl4	UTSW	7	138,670,230 (GRCm39)	missense	probably damaging	1.00
Z1189:Dpysl4	UTSW	7	138,669,324 (GRCm39)	start codon destroyed	probably null
Z1192:Dpysl4	UTSW	7	138,669,324 (GRCm39)	start codon destroyed	probably null

Predicted Primers

PCR Primer
(F):5'- CTGGAGCTCTGTATGATCAGTG -3'
(R):5'- AACCCACCTCTTGCAGTGAG -3'

Sequencing Primer
(F):5'- AGCTCTGTATGATCAGTGATGACTC -3'
(R):5'- CAGTGAGGAGATTCGCTGTCC -3'

Posted On

2016-04-27