Incidental Mutation 'R4994:Lingo4'
ID 385077
Institutional Source Beutler Lab
Gene Symbol Lingo4
Ensembl Gene ENSMUSG00000044505
Gene Name leucine rich repeat and Ig domain containing 4
Synonyms LERN4, Lrrn6d, A530050P17Rik
MMRRC Submission 042588-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.061) question?
Stock # R4994 (G1)
Quality Score 225
Status Validated
Chromosome 3
Chromosomal Location 94306526-94311820 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 94309848 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Histidine to Arginine at position 262 (H262R)
Ref Sequence ENSEMBL: ENSMUSP00000058050 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000029795] [ENSMUST00000050975] [ENSMUST00000197040] [ENSMUST00000200009]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000029795
SMART Domains Protein: ENSMUSP00000029795
Gene: ENSMUSG00000028150

DomainStartEndE-ValueType
ZnF_C4 28 99 7.2e-37 SMART
low complexity region 116 133 N/A INTRINSIC
HOLI 320 474 3.78e-22 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000050975
AA Change: H262R

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000058050
Gene: ENSMUSG00000044505
AA Change: H262R

DomainStartEndE-ValueType
LRRNT 55 89 1.23e-4 SMART
LRR 88 107 2.76e2 SMART
LRR_TYP 108 131 1.02e-6 SMART
LRR_TYP 132 155 7.26e-3 SMART
LRR 156 179 1.33e1 SMART
LRR_TYP 180 203 5.42e-2 SMART
LRR 204 227 4.45e1 SMART
LRR 228 251 3.27e1 SMART
LRR 300 323 4.83e0 SMART
LRR 324 347 3.07e-1 SMART
LRR 348 371 3.36e1 SMART
LRRCT 383 436 5.24e-5 SMART
IGc2 451 516 3.53e-13 SMART
transmembrane domain 560 582 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000197040
SMART Domains Protein: ENSMUSP00000143763
Gene: ENSMUSG00000028150

DomainStartEndE-ValueType
ZnF_C4 7 78 7.2e-37 SMART
low complexity region 95 112 N/A INTRINSIC
HOLI 299 453 3.78e-22 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000198793
Predicted Effect noncoding transcript
Transcript: ENSMUST00000198829
Predicted Effect probably benign
Transcript: ENSMUST00000200009
SMART Domains Protein: ENSMUSP00000143610
Gene: ENSMUSG00000028150

DomainStartEndE-ValueType
ZnF_C4 13 84 7.2e-37 SMART
low complexity region 101 118 N/A INTRINSIC
PDB:3L0L|B 243 309 1e-22 PDB
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.8%
  • 20x: 94.0%
Validation Efficiency 100% (79/79)
Allele List at MGI
Other mutations in this stock
Total: 75 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700030K09Rik A G 8: 73,208,962 (GRCm39) E364G probably benign Het
4930505A04Rik C T 11: 30,376,349 (GRCm39) V173M probably damaging Het
Abcb4 A G 5: 8,978,524 (GRCm39) T557A probably damaging Het
Acadm C T 3: 153,635,221 (GRCm39) E298K probably damaging Het
Adrb3 T C 8: 27,717,855 (GRCm39) probably null Het
Aldh1b1 A G 4: 45,803,128 (GRCm39) Y222C possibly damaging Het
Ankrd6 A G 4: 32,860,387 (GRCm39) Y19H probably damaging Het
Arhgap21 T A 2: 20,854,701 (GRCm39) T1554S probably benign Het
BC043934 T C 9: 96,319,173 (GRCm39) noncoding transcript Het
Birc6 A G 17: 74,901,319 (GRCm39) probably benign Het
Blm A C 7: 80,108,573 (GRCm39) F1357C probably benign Het
Cd209a T C 8: 3,797,713 (GRCm39) probably null Het
Cdk7 G A 13: 100,854,103 (GRCm39) H129Y probably damaging Het
Clec14a G T 12: 58,315,070 (GRCm39) P184Q probably damaging Het
Cma1 T A 14: 56,179,128 (GRCm39) I243F probably damaging Het
Cntnap3 G T 13: 64,909,798 (GRCm39) T769K possibly damaging Het
Col5a1 A C 2: 27,922,751 (GRCm39) K273T possibly damaging Het
Csnk1e A G 15: 79,309,129 (GRCm39) Y266H probably damaging Het
Cyb5d1 A G 11: 69,284,597 (GRCm39) L185S probably damaging Het
Dennd5b T C 6: 148,942,998 (GRCm39) probably null Het
Dipk2a C A 9: 94,419,486 (GRCm39) R148L probably benign Het
Drp2 G A X: 133,342,065 (GRCm39) R567H probably damaging Homo
Dzank1 T G 2: 144,364,486 (GRCm39) D37A probably damaging Het
Echdc2 A G 4: 108,022,825 (GRCm39) I34V probably benign Het
Esm1 A T 13: 113,349,965 (GRCm39) R128S probably benign Het
Fbh1 T A 2: 11,769,041 (GRCm39) I251F probably damaging Het
Fbrsl1 A G 5: 110,595,817 (GRCm39) S73P probably damaging Het
Fbxo6 A T 4: 148,233,948 (GRCm39) S49R probably damaging Het
Gm17093 A T 14: 44,756,779 (GRCm39) Q82L probably damaging Het
Hmcn2 T C 2: 31,348,067 (GRCm39) probably null Het
Hspa4l C A 3: 40,700,081 (GRCm39) probably benign Het
Il3ra G A 14: 14,351,080 (GRCm38) A201T probably benign Het
Irx5 T A 8: 93,087,409 (GRCm39) V447E probably damaging Het
Kif14 G T 1: 136,410,697 (GRCm39) L668F probably damaging Het
Lag3 T A 6: 124,881,416 (GRCm39) R519W unknown Het
Lgr4 A G 2: 109,842,283 (GRCm39) N756S probably damaging Het
Lkaaear1 C A 2: 181,339,376 (GRCm39) G25* probably null Het
Maco1 A G 4: 134,555,610 (GRCm39) Y288H probably damaging Het
Marf1 T C 16: 13,932,095 (GRCm39) K1641E probably benign Het
Mtfmt T C 9: 65,351,133 (GRCm39) probably benign Het
Mtif3 G A 5: 146,893,598 (GRCm39) T203M probably benign Het
Mycbp2 A G 14: 103,407,430 (GRCm39) I2740T probably benign Het
Nrdc A G 4: 108,903,809 (GRCm39) T720A probably benign Het
Or2d2 T C 7: 106,728,271 (GRCm39) T110A probably benign Het
Peak1 T A 9: 56,148,560 (GRCm39) D32V possibly damaging Het
Pigr G A 1: 130,769,554 (GRCm39) D122N probably benign Het
Plekhg3 A G 12: 76,612,311 (GRCm39) R391G possibly damaging Het
Ppfia3 T C 7: 44,990,542 (GRCm39) D919G probably damaging Het
Pramel23 T A 4: 143,424,939 (GRCm39) Q168L possibly damaging Het
Rnase2b T A 14: 51,400,208 (GRCm39) D96E possibly damaging Het
Rsf1 CGGCGGC CGGCGGCCGCGGCGGC 7: 97,229,130 (GRCm39) probably benign Het
Rsf1 G GACGGCGGCT 7: 97,229,116 (GRCm39) probably benign Het
Serpina3f A G 12: 104,186,615 (GRCm39) T394A probably benign Het
Six3 A G 17: 85,928,720 (GRCm39) N18S possibly damaging Het
Slc12a5 T A 2: 164,825,285 (GRCm39) probably null Het
Slc35f6 A G 5: 30,805,427 (GRCm39) N21S probably damaging Het
Slc39a6 A T 18: 24,729,351 (GRCm39) I454N probably damaging Het
Slc40a1 T A 1: 45,948,824 (GRCm39) E485D probably damaging Het
Sort1 G A 3: 108,235,385 (GRCm39) C255Y probably damaging Het
Stab2 T A 10: 86,785,771 (GRCm39) T624S probably benign Het
Stk33 T A 7: 108,939,605 (GRCm39) I99L probably benign Het
Taf4b T A 18: 15,031,100 (GRCm39) I828N probably damaging Het
Terf2 T C 8: 107,803,110 (GRCm39) probably benign Het
Timd4 C T 11: 46,706,344 (GRCm39) R49C probably damaging Het
Tpte T C 8: 22,808,362 (GRCm39) S166P probably benign Het
Trabd2b T C 4: 114,264,052 (GRCm39) L13P probably benign Het
Trappc11 A T 8: 47,975,476 (GRCm39) Y247* probably null Het
Trnt1 C T 6: 106,755,853 (GRCm39) Q303* probably null Het
Tspyl5 T A 15: 33,687,201 (GRCm39) Q248L possibly damaging Het
Ubxn7 A T 16: 32,200,322 (GRCm39) K337N probably damaging Het
Unc13a T A 8: 72,095,816 (GRCm39) I1234F probably benign Het
Vmn1r127 A T 7: 21,052,943 (GRCm39) F282I probably damaging Het
Wdhd1 A T 14: 47,506,111 (GRCm39) probably null Het
Zfp605 A G 5: 110,275,352 (GRCm39) K157E probably damaging Het
Zhx2 T A 15: 57,684,755 (GRCm39) D41E probably benign Het
Other mutations in Lingo4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01074:Lingo4 APN 3 94,310,595 (GRCm39) missense probably benign 0.00
IGL02662:Lingo4 APN 3 94,309,124 (GRCm39) unclassified probably benign
IGL02687:Lingo4 APN 3 94,309,404 (GRCm39) missense probably damaging 1.00
IGL02711:Lingo4 APN 3 94,310,700 (GRCm39) missense probably benign
IGL03001:Lingo4 APN 3 94,309,703 (GRCm39) missense probably damaging 1.00
IGL03260:Lingo4 APN 3 94,309,250 (GRCm39) missense probably benign
PIT4449001:Lingo4 UTSW 3 94,309,239 (GRCm39) missense probably benign
R0088:Lingo4 UTSW 3 94,309,340 (GRCm39) missense probably benign 0.39
R0616:Lingo4 UTSW 3 94,310,388 (GRCm39) missense probably benign 0.00
R1455:Lingo4 UTSW 3 94,306,699 (GRCm39) unclassified probably benign
R1733:Lingo4 UTSW 3 94,310,485 (GRCm39) missense probably benign 0.00
R2001:Lingo4 UTSW 3 94,310,382 (GRCm39) missense probably damaging 1.00
R2085:Lingo4 UTSW 3 94,309,552 (GRCm39) missense probably damaging 1.00
R3793:Lingo4 UTSW 3 94,309,685 (GRCm39) missense probably benign
R3805:Lingo4 UTSW 3 94,309,407 (GRCm39) missense probably damaging 1.00
R3806:Lingo4 UTSW 3 94,309,407 (GRCm39) missense probably damaging 1.00
R4438:Lingo4 UTSW 3 94,310,204 (GRCm39) missense possibly damaging 0.79
R4660:Lingo4 UTSW 3 94,310,672 (GRCm39) missense probably benign 0.00
R4724:Lingo4 UTSW 3 94,310,183 (GRCm39) nonsense probably null
R4981:Lingo4 UTSW 3 94,306,761 (GRCm39) missense probably benign 0.18
R4994:Lingo4 UTSW 3 94,310,308 (GRCm39) missense probably benign 0.02
R5600:Lingo4 UTSW 3 94,309,220 (GRCm39) missense probably benign
R6188:Lingo4 UTSW 3 94,310,157 (GRCm39) missense probably damaging 1.00
R6267:Lingo4 UTSW 3 94,310,697 (GRCm39) missense probably benign 0.02
R6303:Lingo4 UTSW 3 94,310,513 (GRCm39) missense probably damaging 1.00
R6304:Lingo4 UTSW 3 94,310,513 (GRCm39) missense probably damaging 1.00
R6789:Lingo4 UTSW 3 94,306,662 (GRCm39) unclassified probably benign
R7313:Lingo4 UTSW 3 94,310,451 (GRCm39) missense possibly damaging 0.95
R7329:Lingo4 UTSW 3 94,310,162 (GRCm39) missense probably benign
R7631:Lingo4 UTSW 3 94,306,767 (GRCm39) missense possibly damaging 0.93
R7908:Lingo4 UTSW 3 94,309,541 (GRCm39) missense probably benign 0.19
R8277:Lingo4 UTSW 3 94,309,931 (GRCm39) missense possibly damaging 0.61
R8848:Lingo4 UTSW 3 94,310,840 (GRCm39) missense probably benign
R9257:Lingo4 UTSW 3 94,310,676 (GRCm39) missense probably benign 0.05
R9753:Lingo4 UTSW 3 94,309,493 (GRCm39) nonsense probably null
X0054:Lingo4 UTSW 3 94,310,683 (GRCm39) missense possibly damaging 0.54
Z1177:Lingo4 UTSW 3 94,310,301 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GGCCAAGTTAAGTACCATCACTCTG -3'
(R):5'- GATTGAGGTGAGGCAAGCTC -3'

Sequencing Primer
(F):5'- TCTGGAACGTTGCAACCTCAG -3'
(R):5'- TGAGGCAAGCTCCTGACAG -3'
Posted On 2016-05-10