Mutagenetix > Incidental Mutation

Incidental Mutation 'R4995:Mgat5b'

385201

Institutional Source

Beutler Lab

Gene Symbol

Mgat5b

Ensembl Gene

ENSMUSG00000043857

Gene Name

mannoside acetylglucosaminyltransferase 5, isoenzyme B

Synonyms

GnT-IX

MMRRC Submission

042589-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.072) question?

Stock #

R4995 (G1)

Quality Score

118

Status

Validated

Chromosome

Chromosomal Location

116809689-116877774 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

T to A at 116865025 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000099316 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000103027]

AlphaFold

Q765H6

Predicted Effect

probably null
Transcript: ENSMUST00000103027

SMART Domains

Protein: ENSMUSP00000099316
Gene: ENSMUSG00000043857

Domain	Start	End	E-Value	Type
transmembrane domain	21	43	N/A	INTRINSIC
Pfam:Glyco_transf_18	184	777	3.5e-269	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126757

Predicted Effect

probably benign
Transcript: ENSMUST00000136584

SMART Domains

Protein: ENSMUSP00000122276
Gene: ENSMUSG00000043857

Domain	Start	End	E-Value	Type
Pfam:Glyco_transf_18	1	214	3e-116	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139905

Meta Mutation Damage Score

0.8624

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.7%
20x: 93.6%

Validation Efficiency

99% (86/87)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The MGAT5B gene encodes a beta-1,6-N-acetylglucosaminyltransferase (EC 2.4.1.155) that functions in the synthesis of complex cell surface N-glycans (Kaneko et al., 2003 [PubMed 14623122]).[supplied by OMIM, Nov 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit low levels of O-man-linked beta1,6-branched glycans. Mice homozygous for a different knock-out allele exhibit decreased susceptibility to cuprizone induced injury. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 79 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921504E06Rik	G	A	2: 19,498,995 (GRCm39)	Q333*	probably null	Het
4930505A04Rik	C	T	11: 30,376,349 (GRCm39)	V173M	probably damaging	Het
Acvrl1	G	A	15: 101,033,741 (GRCm39)	R141H	probably benign	Het
Adprm	A	G	11: 66,932,436 (GRCm39)	F158L	possibly damaging	Het
Aldoart2	C	T	12: 55,613,038 (GRCm39)	T321M	probably benign	Het
Ap3m2	A	G	8: 23,293,792 (GRCm39)	V86A	probably benign	Het
Arhgef19	T	A	4: 140,974,826 (GRCm39)		probably null	Het
Bcl2l12	T	G	7: 44,643,615 (GRCm39)		probably null	Het
Bptf	T	C	11: 106,945,391 (GRCm39)	Q2501R	probably damaging	Het
C230029F24Rik	A	T	1: 49,377,295 (GRCm39)		noncoding transcript	Het
C7	C	T	15: 5,079,074 (GRCm39)	G78D	probably damaging	Het
Caly	T	C	7: 139,650,538 (GRCm39)	T135A	probably benign	Het
Cbl	A	G	9: 44,065,108 (GRCm39)	M740T	possibly damaging	Het
Cbx4	A	G	11: 118,972,037 (GRCm39)	V446A	probably benign	Het
Celsr1	C	A	15: 85,822,112 (GRCm39)	R1735L	probably damaging	Het
Cep250	A	G	2: 155,830,236 (GRCm39)	D135G	probably damaging	Het
Cgn	T	C	3: 94,687,246 (GRCm39)	T19A	probably damaging	Het
Chic2	A	T	5: 75,204,865 (GRCm39)	V32D	probably damaging	Het
Cntln	A	G	4: 84,968,120 (GRCm39)	K780E	probably benign	Het
Col8a2	A	T	4: 126,204,581 (GRCm39)	D197V	probably damaging	Het
Crot	A	T	5: 9,024,000 (GRCm39)	V372E	probably damaging	Het
Cyb561d2	C	T	9: 107,418,747 (GRCm39)	V26M	probably damaging	Het
Ddx5	G	A	11: 106,676,062 (GRCm39)	T237I	probably damaging	Het
Dmxl2	G	T	9: 54,408,725 (GRCm39)		probably benign	Het
Dock8	T	A	19: 25,135,747 (GRCm39)	S1188R	probably benign	Het
Ehbp1	T	A	11: 22,051,073 (GRCm39)	H493L	probably damaging	Het
Eif5b	T	A	1: 38,090,792 (GRCm39)	*1217K	probably null	Het
Eprs1	A	G	1: 185,142,336 (GRCm39)		probably benign	Het
Etfdh	T	C	3: 79,513,095 (GRCm39)	D376G	probably benign	Het
Fam186a	T	C	15: 99,842,980 (GRCm39)	Q1088R	probably benign	Het
Fbxw16	G	T	9: 109,270,318 (GRCm39)	T141N	probably damaging	Het
Fgf11	G	A	11: 69,689,585 (GRCm39)	H138Y	probably damaging	Het
Htra3	T	C	5: 35,828,418 (GRCm39)	E154G	probably damaging	Het
Hydin	T	A	8: 111,296,274 (GRCm39)	V3601D	probably damaging	Het
Jup	G	T	11: 100,270,367 (GRCm39)	S380*	probably null	Het
Klrg1	T	A	6: 122,255,234 (GRCm39)	D66V	probably benign	Het
Llgl1	C	T	11: 60,600,550 (GRCm39)	A633V	probably benign	Het
Lmln	T	A	16: 32,894,467 (GRCm39)	Y203*	probably null	Het
Lrrc58	T	G	16: 37,697,418 (GRCm39)	C165G	probably benign	Het
Lss	T	C	10: 76,383,371 (GRCm39)	V557A	probably benign	Het
Mast4	T	C	13: 103,042,262 (GRCm39)		probably benign	Het
Med13l	C	A	5: 118,869,014 (GRCm39)	P754Q	possibly damaging	Het
Mga	C	T	2: 119,763,063 (GRCm39)	R1240*	probably null	Het
Mtor	A	G	4: 148,610,209 (GRCm39)	D1572G	probably damaging	Het
Muc4	T	A	16: 32,754,214 (GRCm38)	S1363T	probably benign	Het
Muc4	T	A	16: 32,575,332 (GRCm39)	S1306T	probably benign	Het
Myo18b	A	G	5: 112,908,258 (GRCm39)	V2005A	probably damaging	Het
Myo1e	G	A	9: 70,260,554 (GRCm39)	D571N	probably benign	Het
Mypn	T	C	10: 62,955,747 (GRCm39)		probably null	Het
Ndufb10	T	C	17: 24,941,731 (GRCm39)		probably null	Het
Nelfb	G	T	2: 25,096,208 (GRCm39)	D300E	probably benign	Het
Nicol1	G	A	5: 34,142,270 (GRCm39)	R79H	probably damaging	Het
Odad2	G	A	18: 7,223,663 (GRCm39)	T460M	probably damaging	Het
Or2y1d	T	A	11: 49,321,482 (GRCm39)	Y60N	probably damaging	Het
Or4e5	A	T	14: 52,727,988 (GRCm39)	C61*	probably null	Het
Or52n2c	T	A	7: 104,574,942 (GRCm39)	T10S	probably benign	Het
Or52z15	T	A	7: 103,332,574 (GRCm39)	D206E	probably damaging	Het
Pcdha11	C	T	18: 37,144,080 (GRCm39)	T57M	probably benign	Het
Pkp1	A	T	1: 135,808,593 (GRCm39)	I458N	possibly damaging	Het
Prr12	T	A	7: 44,700,653 (GRCm39)		probably benign	Het
Prrc2c	A	T	1: 162,532,879 (GRCm39)		probably benign	Het
Psd4	T	C	2: 24,287,259 (GRCm39)	F397S	probably benign	Het
Pygm	T	C	19: 6,448,169 (GRCm39)	I737T	probably damaging	Het
Rfx1	T	A	8: 84,806,743 (GRCm39)		probably null	Het
Rsl1	A	G	13: 67,330,313 (GRCm39)	T254A	possibly damaging	Het
Sh3rf3	A	G	10: 58,922,646 (GRCm39)	Q574R	probably benign	Het
Spire1	T	C	18: 67,685,849 (GRCm39)		probably null	Het
St6galnac4	G	A	2: 32,484,075 (GRCm39)	G91D	probably damaging	Het
Sytl2	T	C	7: 90,031,465 (GRCm39)		probably benign	Het
Tbpl2	T	A	2: 23,983,872 (GRCm39)	K188N	possibly damaging	Het
Tenm3	A	T	8: 48,682,172 (GRCm39)	M2486K	possibly damaging	Het
Tgoln1	A	C	6: 72,593,123 (GRCm39)	V119G	possibly damaging	Het
Tpgs1	A	T	10: 79,505,325 (GRCm39)	N28Y	probably benign	Het
U2surp	A	C	9: 95,344,847 (GRCm39)		probably benign	Het
Vmn2r103	A	G	17: 19,993,773 (GRCm39)	H50R	probably benign	Het
Vmn2r19	A	G	6: 123,306,869 (GRCm39)	N459S	probably benign	Het
Vmn2r72	T	C	7: 85,387,693 (GRCm39)	S624G	probably damaging	Het
Vps13c	A	G	9: 67,826,603 (GRCm39)	T1415A	probably benign	Het
Vwa5b1	G	A	4: 138,336,154 (GRCm39)	P147S	probably damaging	Het

Other mutations in Mgat5b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00233:Mgat5b	APN	11	116,822,488 (GRCm39)	missense	probably damaging	0.99
IGL01315:Mgat5b	APN	11	116,814,215 (GRCm39)	missense	probably damaging	1.00
IGL01432:Mgat5b	APN	11	116,864,202 (GRCm39)	missense	probably benign
IGL01480:Mgat5b	APN	11	116,869,278 (GRCm39)	missense	probably benign	0.00
IGL02573:Mgat5b	APN	11	116,868,540 (GRCm39)	missense	probably benign	0.01
IGL02627:Mgat5b	APN	11	116,874,442 (GRCm39)	missense	probably damaging	1.00
IGL03053:Mgat5b	APN	11	116,814,276 (GRCm39)	missense	possibly damaging	0.94
R0149:Mgat5b	UTSW	11	116,875,965 (GRCm39)	splice site	probably benign
R1175:Mgat5b	UTSW	11	116,868,622 (GRCm39)	missense	probably damaging	1.00
R1242:Mgat5b	UTSW	11	116,869,230 (GRCm39)	missense	probably benign	0.08
R1341:Mgat5b	UTSW	11	116,869,223 (GRCm39)	missense	probably benign	0.38
R1666:Mgat5b	UTSW	11	116,874,474 (GRCm39)	missense	probably benign	0.01
R1667:Mgat5b	UTSW	11	116,838,203 (GRCm39)	missense	probably benign	0.00
R1668:Mgat5b	UTSW	11	116,874,474 (GRCm39)	missense	probably benign	0.01
R1702:Mgat5b	UTSW	11	116,839,485 (GRCm39)	missense	possibly damaging	0.73
R1828:Mgat5b	UTSW	11	116,868,614 (GRCm39)	missense	probably damaging	1.00
R2019:Mgat5b	UTSW	11	116,838,174 (GRCm39)	missense	probably benign	0.07
R2102:Mgat5b	UTSW	11	116,810,255 (GRCm39)	start gained	probably benign
R2382:Mgat5b	UTSW	11	116,810,322 (GRCm39)	missense	probably damaging	0.99
R5028:Mgat5b	UTSW	11	116,875,855 (GRCm39)	missense	probably damaging	1.00
R5174:Mgat5b	UTSW	11	116,868,541 (GRCm39)	missense	probably benign	0.01
R5403:Mgat5b	UTSW	11	116,839,483 (GRCm39)	missense	probably benign	0.35
R5643:Mgat5b	UTSW	11	116,864,226 (GRCm39)	missense	probably damaging	0.99
R5644:Mgat5b	UTSW	11	116,864,226 (GRCm39)	missense	probably damaging	0.99
R7116:Mgat5b	UTSW	11	116,835,785 (GRCm39)	missense	possibly damaging	0.93
R7238:Mgat5b	UTSW	11	116,875,809 (GRCm39)	missense	probably benign	0.09
R7284:Mgat5b	UTSW	11	116,835,746 (GRCm39)	missense	probably damaging	0.96
R7440:Mgat5b	UTSW	11	116,859,271 (GRCm39)	nonsense	probably null
R7721:Mgat5b	UTSW	11	116,857,627 (GRCm39)	missense
R8179:Mgat5b	UTSW	11	116,822,554 (GRCm39)	missense	probably benign	0.01
R8229:Mgat5b	UTSW	11	116,838,213 (GRCm39)	missense	probably benign	0.11
R9091:Mgat5b	UTSW	11	116,859,269 (GRCm39)	missense
R9129:Mgat5b	UTSW	11	116,859,348 (GRCm39)	splice site	probably benign
R9270:Mgat5b	UTSW	11	116,859,269 (GRCm39)	missense
R9352:Mgat5b	UTSW	11	116,857,533 (GRCm39)	missense	probably benign	0.30
R9518:Mgat5b	UTSW	11	116,869,299 (GRCm39)	missense	probably benign	0.00
R9721:Mgat5b	UTSW	11	116,857,595 (GRCm39)	missense	probably damaging	1.00
R9733:Mgat5b	UTSW	11	116,838,074 (GRCm39)	missense	possibly damaging	0.91

Predicted Primers

PCR Primer
(F):5'- AGCCTTAGGAGAGTGGAACTTG -3'
(R):5'- ACCCTCAGTCTTGTCTGTGG -3'

Sequencing Primer
(F):5'- ACTTGGTGGGATGAGAGGC -3'
(R):5'- GGTTGTACCCAGGAACTCTCACAG -3'

Posted On

2016-05-10