Incidental Mutation 'R4996:Vmn1r64'
ID 385247
Institutional Source Beutler Lab
Gene Symbol Vmn1r64
Ensembl Gene ENSMUSG00000058399
Gene Name vomeronasal 1 receptor 64
Synonyms V1rd11
MMRRC Submission 042590-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.053) question?
Stock # R4996 (G1)
Quality Score 225
Status Not validated
Chromosome 7
Chromosomal Location 5886579-5887541 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 5887052 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Serine at position 164 (T164S)
Ref Sequence ENSEMBL: ENSMUSP00000077568 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000078475]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000078475
AA Change: T164S

PolyPhen 2 Score 0.029 (Sensitivity: 0.95; Specificity: 0.82)
SMART Domains Protein: ENSMUSP00000077568
Gene: ENSMUSG00000058399
AA Change: T164S

DomainStartEndE-ValueType
Pfam:TAS2R 8 296 3.3e-13 PFAM
Pfam:V1R 41 296 1.5e-19 PFAM
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.3%
  • 10x: 96.1%
  • 20x: 91.5%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 77 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930505A04Rik C T 11: 30,376,349 (GRCm39) V173M probably damaging Het
Actl11 A G 9: 107,808,934 (GRCm39) I1086V possibly damaging Het
Adgrv1 T C 13: 81,726,853 (GRCm39) S500G probably benign Het
Ahcyl1 A T 3: 107,575,603 (GRCm39) V394E probably damaging Het
Alg9 T C 9: 50,720,005 (GRCm39) F494L probably damaging Het
Ankrd55 C A 13: 112,492,622 (GRCm39) D264E possibly damaging Het
Asb14 A G 14: 26,634,073 (GRCm39) N426S possibly damaging Het
Atm A T 9: 53,435,807 (GRCm39) F168I probably benign Het
Atp13a4 A T 16: 29,290,822 (GRCm39) I209N probably damaging Het
BB014433 A T 8: 15,092,166 (GRCm39) L229Q probably benign Het
Calml3 T C 13: 3,854,142 (GRCm39) D21G probably damaging Het
Capn10 A G 1: 92,872,858 (GRCm39) N528S probably damaging Het
Ccnl2 T A 4: 155,897,981 (GRCm39) D141E possibly damaging Het
Cd163 A G 6: 124,296,106 (GRCm39) I817V probably benign Het
Cgnl1 CTTGCCCAGGTT CTT 9: 71,632,108 (GRCm39) probably benign Het
Cln6 T A 9: 62,757,937 (GRCm39) I232N probably damaging Het
Col22a1 A C 15: 71,879,010 (GRCm39) V49G probably damaging Het
Csmd1 A T 8: 15,960,452 (GRCm39) M3321K probably damaging Het
Cyp2u1 T A 3: 131,091,933 (GRCm39) M196L probably benign Het
Dlec1 T G 9: 118,975,118 (GRCm39) L1566R probably damaging Het
Dnajc3 A G 14: 119,209,839 (GRCm39) T305A probably benign Het
Drp2 G A X: 133,342,065 (GRCm39) R567H probably damaging Homo
Efhd1 G T 1: 87,192,280 (GRCm39) G37W possibly damaging Het
Exph5 G C 9: 53,286,910 (GRCm39) E1330D possibly damaging Het
Fbln2 A T 6: 91,242,992 (GRCm39) Y913F probably benign Het
Fmnl1 G A 11: 103,073,482 (GRCm39) S167N possibly damaging Het
Frs3 A G 17: 48,012,635 (GRCm39) E114G probably damaging Het
Gmpr2 T C 14: 55,914,252 (GRCm39) I169T probably damaging Het
Gria2 A G 3: 80,614,448 (GRCm39) S531P probably damaging Het
Hace1 G A 10: 45,526,046 (GRCm39) A296T probably benign Het
Ift70a1 C T 2: 75,810,266 (GRCm39) G606S probably benign Het
Inhbb A C 1: 119,348,548 (GRCm39) L90R probably damaging Het
Insr C T 8: 3,242,665 (GRCm39) R18Q probably null Het
Kdm6b G T 11: 69,296,557 (GRCm39) P570Q probably damaging Het
Lama3 T C 18: 12,651,800 (GRCm39) V1803A probably benign Het
Lpin3 T A 2: 160,747,207 (GRCm39) L811Q probably damaging Het
Lrrc8e C T 8: 4,285,166 (GRCm39) L464F probably damaging Het
Micall2 A G 5: 139,696,344 (GRCm39) S729P probably benign Het
Naca C T 10: 127,878,298 (GRCm39) probably benign Het
Nav1 A T 1: 135,393,709 (GRCm39) S1010T probably damaging Het
Nefm T C 14: 68,358,570 (GRCm39) probably benign Het
Nlrp9c A T 7: 26,085,172 (GRCm39) F136I possibly damaging Het
Nup210 A T 6: 91,030,418 (GRCm39) F137Y probably benign Het
Or1o3 A G 17: 37,573,758 (GRCm39) S266P probably benign Het
Or3a1c A G 11: 74,046,157 (GRCm39) H59R probably damaging Het
Or8k32 T C 2: 86,368,615 (GRCm39) I215V probably benign Het
Otog C A 7: 45,948,030 (GRCm39) H2344N possibly damaging Het
Otog C A 7: 45,954,934 (GRCm39) C517* probably null Het
Pcdhac1 C T 18: 37,225,580 (GRCm39) Q798* probably null Het
Pdhx T C 2: 102,860,657 (GRCm39) D330G probably damaging Het
Peg10 ACATCAGGATCC ACATCAGGATCCCCATCAGGATCC 6: 4,756,454 (GRCm39) probably benign Het
Pgr C A 9: 8,900,914 (GRCm39) P149Q probably damaging Het
Plaat1 G A 16: 29,036,456 (GRCm39) W31* probably null Het
Ppm1h A T 10: 122,777,245 (GRCm39) I504F probably damaging Het
Ppp6r3 A G 19: 3,523,833 (GRCm39) S556P probably damaging Het
Ranbp9 G A 13: 43,578,570 (GRCm39) Q168* probably null Het
Relb A T 7: 19,349,528 (GRCm39) L259Q probably benign Het
Rfx5 G A 3: 94,863,126 (GRCm39) V73I probably benign Het
Rgcc T C 14: 79,527,716 (GRCm39) D125G possibly damaging Het
Rmnd5b A G 11: 51,518,735 (GRCm39) V86A probably damaging Het
Slc15a5 G A 6: 138,020,583 (GRCm39) T250M probably damaging Het
Slc7a2 A T 8: 41,365,599 (GRCm39) K477* probably null Het
Slx9 A T 10: 77,351,367 (GRCm39) W14R probably null Het
Smc2 T A 4: 52,461,042 (GRCm39) probably null Het
Sox5 A T 6: 143,974,070 (GRCm39) L226* probably null Het
Sp140l2 G T 1: 85,224,815 (GRCm39) A240E probably benign Het
Syne2 A G 12: 75,990,724 (GRCm39) E1903G possibly damaging Het
Tenm3 A T 8: 48,688,861 (GRCm39) I2226N probably damaging Het
Tmtc3 A T 10: 100,283,086 (GRCm39) I823N probably damaging Het
Top6bl T A 19: 4,676,112 (GRCm39) K673N probably benign Het
Tor3a T C 1: 156,483,342 (GRCm39) Y360C probably damaging Het
Trpc3 T C 3: 36,716,967 (GRCm39) E357G probably benign Het
Tubgcp6 A T 15: 88,987,693 (GRCm39) N1093K possibly damaging Het
Vmn2r40 T A 7: 8,911,166 (GRCm39) Q709L probably damaging Het
Vmn2r81 A T 10: 79,129,247 (GRCm39) I713L probably benign Het
Washc5 T C 15: 59,205,484 (GRCm39) T686A probably benign Het
Wipf1 GCCTCCTCCTCCTCCTCCTCCTCC GCCTCCTCCTCCTCCTCCTCC 2: 73,270,418 (GRCm39) probably benign Het
Other mutations in Vmn1r64
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00161:Vmn1r64 APN 7 5,886,827 (GRCm39) missense probably damaging 0.98
IGL01070:Vmn1r64 APN 7 5,886,941 (GRCm39) missense probably benign 0.04
IGL01817:Vmn1r64 APN 7 5,887,222 (GRCm39) missense probably damaging 1.00
IGL02026:Vmn1r64 APN 7 5,886,649 (GRCm39) missense possibly damaging 0.84
IGL02657:Vmn1r64 APN 7 5,886,727 (GRCm39) missense probably benign 0.33
IGL03352:Vmn1r64 APN 7 5,887,070 (GRCm39) missense probably benign 0.12
R0200:Vmn1r64 UTSW 7 5,886,817 (GRCm39) missense probably benign 0.38
R0540:Vmn1r64 UTSW 7 5,887,096 (GRCm39) missense probably damaging 1.00
R0655:Vmn1r64 UTSW 7 5,887,207 (GRCm39) missense probably benign 0.25
R1212:Vmn1r64 UTSW 7 5,887,210 (GRCm39) missense probably damaging 1.00
R1579:Vmn1r64 UTSW 7 5,886,803 (GRCm39) missense probably damaging 1.00
R2034:Vmn1r64 UTSW 7 5,886,988 (GRCm39) missense probably benign 0.09
R2221:Vmn1r64 UTSW 7 5,887,448 (GRCm39) missense probably benign 0.00
R2240:Vmn1r64 UTSW 7 5,887,369 (GRCm39) nonsense probably null
R2305:Vmn1r64 UTSW 7 5,887,535 (GRCm39) missense probably benign 0.04
R3019:Vmn1r64 UTSW 7 5,887,226 (GRCm39) missense probably damaging 1.00
R4256:Vmn1r64 UTSW 7 5,886,895 (GRCm39) missense probably benign 0.05
R4666:Vmn1r64 UTSW 7 5,887,357 (GRCm39) missense probably damaging 0.99
R5682:Vmn1r64 UTSW 7 5,886,622 (GRCm39) missense possibly damaging 0.79
R5730:Vmn1r64 UTSW 7 5,887,522 (GRCm39) missense probably benign 0.01
R7397:Vmn1r64 UTSW 7 5,887,013 (GRCm39) missense possibly damaging 0.87
R9697:Vmn1r64 UTSW 7 5,886,859 (GRCm39) missense probably benign 0.04
X0063:Vmn1r64 UTSW 7 5,887,349 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- TGCTTTGGTCTCAGCATGGC -3'
(R):5'- ACAATCATGTGCTCCACCTG -3'

Sequencing Primer
(F):5'- AGCATGGCCTCTGTTGATC -3'
(R):5'- TGTCTCCTCAGTACCTACCAG -3'
Posted On 2016-05-10