Mutagenetix > Incidental Mutation

Incidental Mutation 'R4523:Slc5a4a'

386326

Institutional Source

Beutler Lab

Gene Symbol

Slc5a4a

Ensembl Gene

ENSMUSG00000020229

Gene Name

solute carrier family 5, member 4a

Synonyms

MMRRC Submission

042004-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.074) question?

Stock #

R4523 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

75983285-76025099 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 75984196 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Valine at position 46 (A46V)

Ref Sequence

ENSEMBL: ENSMUSP00000020450 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020450]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000020450
AA Change: A46V

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000020450
Gene: ENSMUSG00000020229
AA Change: A46V

Domain	Start	End	E-Value	Type
transmembrane domain	26	48	N/A	INTRINSIC
Pfam:SSF	58	492	4e-161	PFAM
transmembrane domain	526	548	N/A	INTRINSIC
transmembrane domain	636	655	N/A	INTRINSIC

Meta Mutation Damage Score

0.1449

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.2%

Validation Efficiency

100% (61/61)

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Atp8a1	G	T	5: 67,824,943 (GRCm39)	T796K	probably benign	Het
Atr	T	C	9: 95,744,916 (GRCm39)	S78P	probably damaging	Het
Calb2	C	T	8: 110,875,141 (GRCm39)		probably null	Het
Ccdc88c	G	T	12: 100,879,591 (GRCm39)	S1843R	possibly damaging	Het
Cdca7	A	G	2: 72,310,042 (GRCm39)	S77G	probably damaging	Het
Cfap47	A	T	X: 78,553,601 (GRCm39)	N291K	possibly damaging	Het
Cnot2	C	T	10: 116,417,379 (GRCm39)		probably benign	Het
Cstf2t	T	A	19: 31,060,482 (GRCm39)	V6D	possibly damaging	Het
Cybc1	A	G	11: 121,114,934 (GRCm39)		probably benign	Het
Dido1	T	C	2: 180,314,085 (GRCm39)	I852V	probably damaging	Het
Dmgdh	C	T	13: 93,825,138 (GRCm39)	Q154*	probably null	Het
Dnah12	T	C	14: 26,491,979 (GRCm39)	F1138S	probably damaging	Het
Dnah12	G	A	14: 26,598,915 (GRCm39)	A998T	possibly damaging	Het
Dusp5	T	G	19: 53,526,032 (GRCm39)	Y225D	probably damaging	Het
Fam193a	G	A	5: 34,600,715 (GRCm39)	D601N	probably benign	Het
Fbxo41	A	G	6: 85,461,024 (GRCm39)	I228T	probably damaging	Het
Fmo2	T	C	1: 162,715,277 (GRCm39)	K115R	probably benign	Het
Gak	G	T	5: 108,724,432 (GRCm39)	Q1093K	probably benign	Het
Gm5277	G	T	3: 78,799,493 (GRCm39)		noncoding transcript	Het
Hgsnat	A	G	8: 26,458,389 (GRCm39)		probably null	Het
Hycc1	T	C	5: 24,170,120 (GRCm39)	T410A	probably benign	Het
Irag1	T	C	7: 110,523,048 (GRCm39)	M338V	probably benign	Het
Map3k3	G	A	11: 106,039,694 (GRCm39)	R278H	probably damaging	Het
Muc4	T	C	16: 32,555,154 (GRCm39)		probably benign	Het
Nectin3	C	A	16: 46,268,953 (GRCm39)	R483L	probably benign	Het
Nop2	G	T	6: 125,110,515 (GRCm39)	R47L	probably damaging	Het
Ntng1	A	G	3: 109,842,312 (GRCm39)	S154P	probably damaging	Het
Olfml2b	T	C	1: 170,496,791 (GRCm39)	I474T	probably benign	Het
Optc	G	T	1: 133,831,492 (GRCm39)	T138K	possibly damaging	Het
Or7g25	T	C	9: 19,160,525 (GRCm39)	T57A	probably damaging	Het
Or8k22	C	G	2: 86,163,644 (GRCm39)	D19H	probably benign	Het
Orc4	G	A	2: 48,827,501 (GRCm39)	P31S	probably benign	Het
Pabir3	G	A	X: 52,382,376 (GRCm39)	R94H	possibly damaging	Het
Pard3	C	T	8: 128,125,108 (GRCm39)	P421S	probably benign	Het
Pcdhb22	G	T	18: 37,653,474 (GRCm39)	E647D	probably benign	Het
Pclo	A	G	5: 14,730,006 (GRCm39)		probably benign	Het
Prkce	G	T	17: 86,798,178 (GRCm39)		probably null	Het
Prr12	T	C	7: 44,697,947 (GRCm39)	D656G	unknown	Het
Ptprk	A	T	10: 28,342,048 (GRCm39)	D485V	probably damaging	Het
Ptprn2	T	C	12: 116,839,620 (GRCm39)	L381P	probably damaging	Het
Rnf144b	T	C	13: 47,361,013 (GRCm39)	I51T	probably benign	Het
Rpl10l	T	C	12: 66,330,512 (GRCm39)	D207G	probably benign	Het
Sh3glb2	A	T	2: 30,240,711 (GRCm39)	V118E	probably damaging	Het
Sipa1l2	C	T	8: 126,219,163 (GRCm39)	G58D	probably damaging	Het
Spmip8	T	A	8: 96,039,638 (GRCm39)	Y18*	probably null	Het
Tgm7	C	A	2: 120,929,069 (GRCm39)		probably null	Het
Tjap1	A	G	17: 46,569,718 (GRCm39)	V424A	probably benign	Het
Trpm6	A	T	19: 18,773,864 (GRCm39)	I414F	probably damaging	Het
Tsr3	C	G	17: 25,460,723 (GRCm39)	D196E	probably benign	Het
Ubqlnl	C	T	7: 103,798,925 (GRCm39)	V191M	probably benign	Het
Vmn2r72	T	A	7: 85,401,134 (GRCm39)	H95L	probably benign	Het
Vmn2r97	T	A	17: 19,149,333 (GRCm39)	N240K	probably benign	Het
Xdh	C	A	17: 74,205,339 (GRCm39)	G1042V	probably damaging	Het
Zcchc4	A	G	5: 52,941,409 (GRCm39)	D68G	probably damaging	Het

Other mutations in Slc5a4a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00670:Slc5a4a	APN	10	75,999,567 (GRCm39)	missense	probably damaging	1.00
IGL01725:Slc5a4a	APN	10	76,017,508 (GRCm39)	missense	probably benign	0.00
IGL02629:Slc5a4a	APN	10	75,983,413 (GRCm39)	missense	unknown
IGL02976:Slc5a4a	APN	10	76,006,527 (GRCm39)	missense	possibly damaging	0.67
IGL03255:Slc5a4a	APN	10	75,986,346 (GRCm39)	missense	probably damaging	1.00
IGL03258:Slc5a4a	APN	10	75,986,386 (GRCm39)	missense	possibly damaging	0.81
R0054:Slc5a4a	UTSW	10	76,014,031 (GRCm39)	missense	probably null	0.00
R0244:Slc5a4a	UTSW	10	76,024,986 (GRCm39)	missense	possibly damaging	0.46
R0398:Slc5a4a	UTSW	10	76,018,556 (GRCm39)	missense	possibly damaging	0.46
R0799:Slc5a4a	UTSW	10	76,012,368 (GRCm39)	missense	probably benign	0.00
R1160:Slc5a4a	UTSW	10	76,013,995 (GRCm39)	missense	possibly damaging	0.52
R1471:Slc5a4a	UTSW	10	76,022,362 (GRCm39)	missense	probably damaging	0.99
R1720:Slc5a4a	UTSW	10	76,025,103 (GRCm39)	splice site	probably null
R1857:Slc5a4a	UTSW	10	76,002,569 (GRCm39)	missense	probably benign	0.27
R1858:Slc5a4a	UTSW	10	76,002,569 (GRCm39)	missense	probably benign	0.27
R1859:Slc5a4a	UTSW	10	76,002,569 (GRCm39)	missense	probably benign	0.27
R1942:Slc5a4a	UTSW	10	75,983,422 (GRCm39)	missense	unknown
R2016:Slc5a4a	UTSW	10	75,989,414 (GRCm39)	missense	probably benign	0.00
R2316:Slc5a4a	UTSW	10	76,013,915 (GRCm39)	splice site	probably null
R3420:Slc5a4a	UTSW	10	76,012,407 (GRCm39)	missense	probably benign	0.00
R3421:Slc5a4a	UTSW	10	76,012,407 (GRCm39)	missense	probably benign	0.00
R3422:Slc5a4a	UTSW	10	76,012,407 (GRCm39)	missense	probably benign	0.00
R3845:Slc5a4a	UTSW	10	76,024,983 (GRCm39)	missense	probably damaging	0.99
R3874:Slc5a4a	UTSW	10	76,017,489 (GRCm39)	missense	probably benign	0.42
R4537:Slc5a4a	UTSW	10	76,013,929 (GRCm39)	nonsense	probably null
R4538:Slc5a4a	UTSW	10	76,013,929 (GRCm39)	nonsense	probably null
R4755:Slc5a4a	UTSW	10	76,022,398 (GRCm39)	missense	probably benign	0.00
R4868:Slc5a4a	UTSW	10	76,014,065 (GRCm39)	missense	probably damaging	0.98
R5135:Slc5a4a	UTSW	10	75,983,428 (GRCm39)	missense	unknown
R5254:Slc5a4a	UTSW	10	76,018,572 (GRCm39)	nonsense	probably null
R6083:Slc5a4a	UTSW	10	75,983,431 (GRCm39)	missense	unknown
R6331:Slc5a4a	UTSW	10	76,014,034 (GRCm39)	missense	probably damaging	0.98
R7591:Slc5a4a	UTSW	10	75,983,501 (GRCm39)	critical splice donor site	probably benign
R7671:Slc5a4a	UTSW	10	75,983,384 (GRCm39)	missense	unknown
R8785:Slc5a4a	UTSW	10	75,986,238 (GRCm39)	critical splice acceptor site	probably benign
R8929:Slc5a4a	UTSW	10	76,006,617 (GRCm39)	missense	probably benign	0.27
R8993:Slc5a4a	UTSW	10	76,022,369 (GRCm39)	missense	probably benign	0.15
R9018:Slc5a4a	UTSW	10	76,002,546 (GRCm39)	missense	possibly damaging	0.67
R9474:Slc5a4a	UTSW	10	75,986,238 (GRCm39)	critical splice acceptor site	probably benign
R9567:Slc5a4a	UTSW	10	76,022,396 (GRCm39)	missense	probably benign	0.08
R9648:Slc5a4a	UTSW	10	76,002,608 (GRCm39)	missense	probably damaging	1.00
Z1177:Slc5a4a	UTSW	10	76,018,681 (GRCm39)	nonsense	probably null
Z1177:Slc5a4a	UTSW	10	76,002,578 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- CGGTTTCAAGATGCGAAATTCTG -3'
(R):5'- GATCTTTCTGGAATCCCCGC -3'

Sequencing Primer
(F):5'- GCTAAATTAAATCGTGGGGTTTCC -3'
(R):5'- GCTCTTACTCTTTAATTCGAGGATG -3'

Posted On

2016-05-11