Mutagenetix > Incidental Mutation

Incidental Mutation 'R4728:Mlc1'

386472

Institutional Source

Beutler Lab

Gene Symbol

Mlc1

Ensembl Gene

ENSMUSG00000035805

Gene Name

megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)

Synonyms

Kiaa0027-hp, WKL1

MMRRC Submission

042020-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4728 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

88840087-88863192 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to T at 88862234 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000104993 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000015509] [ENSMUST00000042594] [ENSMUST00000109368] [ENSMUST00000109368] [ENSMUST00000146993]

AlphaFold

Q8VHK5

Predicted Effect

probably benign
Transcript: ENSMUST00000015509

SMART Domains

Protein: ENSMUSP00000015509
Gene: ENSMUSG00000015365

Domain	Start	End	E-Value	Type
low complexity region	52	65	N/A	INTRINSIC
low complexity region	338	349	N/A	INTRINSIC
Blast:AAA	444	526	2e-7	BLAST
internal_repeat_1	615	651	5.23e-10	PROSPERO
internal_repeat_1	648	696	5.23e-10	PROSPERO
Pfam:AAA_11	746	852	1.4e-17	PFAM
Pfam:AAA_30	746	933	5e-11	PFAM
Pfam:AAA_19	754	826	1.5e-10	PFAM
Pfam:AAA_11	855	928	1.3e-18	PFAM
Pfam:AAA_12	935	1152	3.7e-44	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000042594

SMART Domains

Protein: ENSMUSP00000047667
Gene: ENSMUSG00000035805

Domain	Start	End	E-Value	Type
transmembrane domain	57	79	N/A	INTRINSIC
transmembrane domain	119	141	N/A	INTRINSIC
transmembrane domain	148	170	N/A	INTRINSIC
transmembrane domain	203	225	N/A	INTRINSIC
transmembrane domain	234	256	N/A	INTRINSIC
transmembrane domain	266	288	N/A	INTRINSIC
transmembrane domain	308	330	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000109368

SMART Domains

Protein: ENSMUSP00000104993
Gene: ENSMUSG00000035805

Domain	Start	End	E-Value	Type
transmembrane domain	63	85	N/A	INTRINSIC
transmembrane domain	125	147	N/A	INTRINSIC
transmembrane domain	154	176	N/A	INTRINSIC
transmembrane domain	209	231	N/A	INTRINSIC
transmembrane domain	240	262	N/A	INTRINSIC
transmembrane domain	272	294	N/A	INTRINSIC
transmembrane domain	314	336	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000109368

SMART Domains

Protein: ENSMUSP00000104993
Gene: ENSMUSG00000035805

Domain	Start	End	E-Value	Type
transmembrane domain	63	85	N/A	INTRINSIC
transmembrane domain	125	147	N/A	INTRINSIC
transmembrane domain	154	176	N/A	INTRINSIC
transmembrane domain	209	231	N/A	INTRINSIC
transmembrane domain	240	262	N/A	INTRINSIC
transmembrane domain	272	294	N/A	INTRINSIC
transmembrane domain	314	336	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000146993

SMART Domains

Protein: ENSMUSP00000118437
Gene: ENSMUSG00000015365

Domain	Start	End	E-Value	Type
low complexity region	104	117	N/A	INTRINSIC
low complexity region	390	401	N/A	INTRINSIC
Blast:AAA	496	578	2e-7	BLAST
internal_repeat_1	667	703	6.08e-10	PROSPERO
internal_repeat_1	700	748	6.08e-10	PROSPERO
Pfam:AAA_11	798	903	1e-15	PFAM
Pfam:AAA_30	798	985	1.8e-11	PFAM
Pfam:AAA_19	806	878	7e-11	PFAM
Pfam:AAA_11	907	980	3.2e-17	PFAM
Pfam:AAA_12	987	1204	1.4e-43	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156949

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000228970

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.9%
20x: 94.3%

Validation Efficiency

94% (73/78)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The function of this gene product is unknown; however, homology to other proteins suggests that it may be an integral membrane transporter. Mutations in this gene have been associated with megalencephalic leukoencephalopathy with subcortical cysts, an autosomal recessive neurological disorder. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a null allele exhibit myelin vacuolization that progresses with age, and show alterations in glial cell and oligodendrocyte physiology. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Bicc1	C	T	10: 70,771,661 (GRCm39)		probably null	Het
Bpifc	T	A	10: 85,827,063 (GRCm39)	H162L	possibly damaging	Het
Ccdc163	C	T	4: 116,566,209 (GRCm39)		probably benign	Het
Cldn12	A	G	5: 5,558,385 (GRCm39)	F14S	probably damaging	Het
Cyth4	G	A	15: 78,486,913 (GRCm39)	G14R	probably benign	Het
Ddhd2	C	T	8: 26,242,294 (GRCm39)	V194I	probably damaging	Het
Ddx23	A	T	15: 98,548,106 (GRCm39)	V433E	probably damaging	Het
Defb34	A	G	8: 19,176,434 (GRCm39)	N42D	possibly damaging	Het
Dennd6a	A	G	14: 26,348,575 (GRCm39)	E313G	probably null	Het
Dhx30	A	G	9: 109,916,718 (GRCm39)	F570S	probably damaging	Het
Dnah3	T	C	7: 119,658,589 (GRCm39)	E864G	probably damaging	Het
Eps8	G	A	6: 137,486,160 (GRCm39)	Q451*	probably null	Het
Fmo9	A	T	1: 166,490,880 (GRCm39)	Y533N	possibly damaging	Het
Fut8	T	A	12: 77,521,973 (GRCm39)	D537E	probably damaging	Het
Gm5407	T	C	16: 49,117,283 (GRCm39)		noncoding transcript	Het
Gm9916	A	G	3: 118,228,690 (GRCm39)		noncoding transcript	Het
Grm5	T	A	7: 87,624,496 (GRCm39)	F354L	probably damaging	Het
Hira	C	T	16: 18,741,654 (GRCm39)	A353V	probably damaging	Het
Ifna4	C	A	4: 88,760,519 (GRCm39)	T141K	probably benign	Het
Igf1r	T	C	7: 67,839,372 (GRCm39)	L628P	probably damaging	Het
Kcnh5	A	T	12: 75,054,555 (GRCm39)	I463N	probably damaging	Het
Kcnh8	C	A	17: 53,032,898 (GRCm39)	Q62K	probably damaging	Het
Kif3c	A	T	12: 3,415,873 (GRCm39)		probably benign	Het
Kmo	A	G	1: 175,484,329 (GRCm39)	D353G	possibly damaging	Het
Lrp1	T	C	10: 127,399,606 (GRCm39)	T2301A	probably damaging	Het
Lrrc7	GAAGTTGTTTGGAGATTCTTATCTTA	GA	3: 158,024,045 (GRCm39)		probably benign	Het
Map3k9	C	T	12: 81,769,147 (GRCm39)	R967Q	probably damaging	Het
Mcm8	A	G	2: 132,674,774 (GRCm39)	H414R	probably damaging	Het
Mier1	A	G	4: 102,997,402 (GRCm39)	E145G	probably damaging	Het
Napb	T	C	2: 148,551,245 (GRCm39)	D96G	probably damaging	Het
Nbas	T	A	12: 13,338,740 (GRCm39)	S193R	probably damaging	Het
Nlrp4a	T	C	7: 26,174,515 (GRCm39)	V967A	probably benign	Het
Nlrp4e	T	A	7: 23,020,989 (GRCm39)	I492K	probably benign	Het
Notch4	A	G	17: 34,789,179 (GRCm39)	T497A	probably benign	Het
Npdc1	G	A	2: 25,298,957 (GRCm39)	D284N	probably damaging	Het
Ogdh	T	A	11: 6,292,549 (GRCm39)	Y417N	probably damaging	Het
Or5w19	T	C	2: 87,698,779 (GRCm39)	V148A	probably benign	Het
Ovol1	A	T	19: 5,603,690 (GRCm39)	Y70*	probably null	Het
P2ry1	A	G	3: 60,911,641 (GRCm39)	Y260C	probably damaging	Het
Pcx	G	T	19: 4,653,124 (GRCm39)	R263L	probably damaging	Het
Pla2g4f	T	A	2: 120,131,402 (GRCm39)	T774S	probably benign	Het
Prdm15	T	G	16: 97,622,986 (GRCm39)	K289Q	probably benign	Het
Prl7c1	A	T	13: 27,960,268 (GRCm39)	H91Q	probably benign	Het
Prmt5	C	T	14: 54,745,364 (GRCm39)	R601H	probably benign	Het
Prrc2b	T	A	2: 32,120,637 (GRCm39)	D2192E	probably damaging	Het
Ptdss2	A	G	7: 140,734,372 (GRCm39)	I299V	probably benign	Het
Rbm28	A	G	6: 29,143,591 (GRCm39)	V354A	probably damaging	Het
Rps6kb1	G	C	11: 86,435,484 (GRCm39)		probably null	Het
Sema3f	A	G	9: 107,582,639 (GRCm39)	S35P	probably benign	Het
Serpina3n	A	T	12: 104,375,422 (GRCm39)	T165S	probably benign	Het
Serpinb13	C	T	1: 106,910,574 (GRCm39)	S66L	probably damaging	Het
Sh2d4b	T	A	14: 40,564,389 (GRCm39)	R267*	probably null	Het
Slc5a12	A	T	2: 110,474,769 (GRCm39)	K554*	probably null	Het
Snrnp200	T	C	2: 127,059,334 (GRCm39)	L409P	probably damaging	Het
Snrnp200	T	A	2: 127,069,798 (GRCm39)	V981E	possibly damaging	Het
Spon2	T	A	5: 33,374,682 (GRCm39)	R41S	probably benign	Het
Sptb	A	T	12: 76,630,153 (GRCm39)	M2279K	probably benign	Het
Srcap	T	G	7: 127,140,096 (GRCm39)		probably null	Het
Tctn3	A	G	19: 40,594,186 (GRCm39)	V409A	probably damaging	Het
Tg	A	C	15: 66,554,676 (GRCm39)	Q697P	probably damaging	Het
Tmem181a	A	G	17: 6,340,874 (GRCm39)	D141G	probably benign	Het
Tmem82	A	G	4: 141,341,963 (GRCm39)	S334P	probably benign	Het
Ubr4	A	G	4: 139,151,190 (GRCm39)	Y1875C	probably damaging	Het
Vmn1r63	C	A	7: 5,806,362 (GRCm39)	R90L	probably damaging	Het
Zfp330	A	C	8: 83,497,475 (GRCm39)	Y56D	probably damaging	Het

Other mutations in Mlc1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01634:Mlc1	APN	15	88,858,921 (GRCm39)	splice site	probably benign
IGL03251:Mlc1	APN	15	88,858,934 (GRCm39)	missense	possibly damaging	0.88
R0710:Mlc1	UTSW	15	88,862,067 (GRCm39)	missense	possibly damaging	0.88
R1037:Mlc1	UTSW	15	88,849,664 (GRCm39)	missense	probably damaging	1.00
R1573:Mlc1	UTSW	15	88,842,350 (GRCm39)	missense	probably damaging	1.00
R1994:Mlc1	UTSW	15	88,858,782 (GRCm39)	missense	possibly damaging	0.50
R2121:Mlc1	UTSW	15	88,847,634 (GRCm39)	missense	probably benign	0.22
R2302:Mlc1	UTSW	15	88,849,640 (GRCm39)	missense	possibly damaging	0.63
R3110:Mlc1	UTSW	15	88,850,199 (GRCm39)	missense	probably benign	0.00
R3112:Mlc1	UTSW	15	88,850,199 (GRCm39)	missense	probably benign	0.00
R3117:Mlc1	UTSW	15	88,860,731 (GRCm39)	missense	probably damaging	1.00
R4027:Mlc1	UTSW	15	88,850,697 (GRCm39)	missense	probably benign	0.29
R4450:Mlc1	UTSW	15	88,847,693 (GRCm39)	missense	probably benign	0.19
R4576:Mlc1	UTSW	15	88,858,740 (GRCm39)	missense	probably damaging	1.00
R4697:Mlc1	UTSW	15	88,858,980 (GRCm39)	missense	probably damaging	1.00
R4910:Mlc1	UTSW	15	88,842,415 (GRCm39)	missense	possibly damaging	0.94
R5618:Mlc1	UTSW	15	88,858,769 (GRCm39)	missense	probably damaging	1.00
R7528:Mlc1	UTSW	15	88,858,710 (GRCm39)	missense	possibly damaging	0.95
R7746:Mlc1	UTSW	15	88,848,373 (GRCm39)	missense	probably damaging	0.99
R7885:Mlc1	UTSW	15	88,862,107 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- TGTCTTGTAGCTGAAGCACG -3'
(R):5'- GATAGTGTTTACCCAGGTAGACG -3'

Sequencing Primer
(F):5'- AACCTCTTCGACAGCTGCAGG -3'
(R):5'- TAGACGTTTAAGCCAGCCTG -3'

Posted On

2016-06-03