Mutagenetix > Incidental Mutation

Incidental Mutation 'R5060:Vwde'

386558

Institutional Source

Beutler Lab

Gene Symbol

Vwde

Ensembl Gene

ENSMUSG00000079679

Gene Name

von Willebrand factor D and EGF domains

Synonyms

LOC232585

MMRRC Submission

042650-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.194) question?

Stock #

R5060 (G1)

Quality Score

182

Status

Validated

Chromosome

Chromosomal Location

13156439-13224964 bp(-) (GRCm39)

Type of Mutation

splice site (5 bp from exon)

DNA Base Change (assembly)

C to T at 13208323 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000145311 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000054530] [ENSMUST00000203074] [ENSMUST00000203074]

AlphaFold

Q6DFV8

Predicted Effect

probably null
Transcript: ENSMUST00000054530

SMART Domains

Protein: ENSMUSP00000058110
Gene: ENSMUSG00000079679

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Blast:ZP	58	163	1e-5	BLAST
low complexity region	192	199	N/A	INTRINSIC
VWD	420	588	1.51e-4	SMART
low complexity region	638	651	N/A	INTRINSIC
Blast:EGF_like	890	918	2e-9	BLAST

Predicted Effect

probably null
Transcript: ENSMUST00000203074

SMART Domains

Protein: ENSMUSP00000145311
Gene: ENSMUSG00000079679

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
low complexity region	192	199	N/A	INTRINSIC
VWD	420	588	7.4e-7	SMART
low complexity region	638	651	N/A	INTRINSIC
EGF_like	890	918	1.5e-1	SMART
EGF	1166	1217	8.5e-6	SMART
EGF_like	1182	1233	2.7e-2	SMART
EGF	1222	1254	9.7e-7	SMART
EGF_CA	1256	1295	5.3e-12	SMART
EGF	1446	1483	5e-2	SMART
EGF	1485	1514	3.8e-3	SMART
EGF	1517	1546	3.6e-3	SMART
EGF	1549	1578	8e-7	SMART
EGF	1581	1610	3.4e-3	SMART
EGF	1613	1642	1.5e-3	SMART
EGF	1645	1674	1.1e-5	SMART
EGF	1677	1706	2.5e-4	SMART
EGF	1709	1738	2.5e-3	SMART
EGF	1741	1770	1.8e-2	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000203074

SMART Domains

Protein: ENSMUSP00000145311
Gene: ENSMUSG00000079679

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
low complexity region	192	199	N/A	INTRINSIC
VWD	420	588	7.4e-7	SMART
low complexity region	638	651	N/A	INTRINSIC
EGF_like	890	918	1.5e-1	SMART
EGF	1166	1217	8.5e-6	SMART
EGF_like	1182	1233	2.7e-2	SMART
EGF	1222	1254	9.7e-7	SMART
EGF_CA	1256	1295	5.3e-12	SMART
EGF	1446	1483	5e-2	SMART
EGF	1485	1514	3.8e-3	SMART
EGF	1517	1546	3.6e-3	SMART
EGF	1549	1578	8e-7	SMART
EGF	1581	1610	3.4e-3	SMART
EGF	1613	1642	1.5e-3	SMART
EGF	1645	1674	1.1e-5	SMART
EGF	1677	1706	2.5e-4	SMART
EGF	1709	1738	2.5e-3	SMART
EGF	1741	1770	1.8e-2	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000204339

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.5%
20x: 92.9%

Validation Efficiency

98% (52/53)

Allele List at MGI

Other mutations in this stock

Total: 42 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A530064D06Rik	A	T	17: 48,474,107 (GRCm39)	L17Q	probably damaging	Het
Abca6	A	G	11: 110,110,430 (GRCm39)	V573A	possibly damaging	Het
Abcc9	A	G	6: 142,571,836 (GRCm39)		probably benign	Het
Actg1	A	G	11: 120,237,839 (GRCm39)	S234P	probably benign	Het
Acvr2a	A	G	2: 48,780,311 (GRCm39)	D177G	probably damaging	Het
Adamts12	T	C	15: 11,300,054 (GRCm39)	C914R	probably damaging	Het
Adprhl1	A	G	8: 13,298,621 (GRCm39)	I103T	possibly damaging	Het
Als2cl	C	T	9: 110,713,205 (GRCm39)	L32F	probably damaging	Het
Ank2	T	C	3: 126,739,570 (GRCm39)		probably benign	Het
Ankrd52	T	A	10: 128,225,710 (GRCm39)	S959R	possibly damaging	Het
Bnc2	C	A	4: 84,449,872 (GRCm39)	A122S	probably benign	Het
Cert1	A	T	13: 96,739,663 (GRCm39)	K226N	probably benign	Het
Cfap54	C	T	10: 92,875,013 (GRCm39)	V443M	probably damaging	Het
Cilk1	C	T	9: 78,060,978 (GRCm39)	T208I	probably benign	Het
Clca4b	T	A	3: 144,617,267 (GRCm39)	R794S	probably damaging	Het
Cyp2c65	T	C	19: 39,049,514 (GRCm39)	L14P	unknown	Het
Ggt5	T	C	10: 75,440,608 (GRCm39)	M243T	probably benign	Het
Gmds	A	G	13: 32,124,482 (GRCm39)	I292T	probably benign	Het
Gpcpd1	A	T	2: 132,386,355 (GRCm39)	V341E	probably damaging	Het
Grm3	A	G	5: 9,620,167 (GRCm39)	F359S	probably damaging	Het
Hcn1	A	T	13: 118,010,441 (GRCm39)	K340*	probably null	Het
Heatr9	T	C	11: 83,403,258 (GRCm39)	E427G	probably benign	Het
Kif26b	G	A	1: 178,358,195 (GRCm39)	G102D	unknown	Het
Mark3	T	C	12: 111,584,760 (GRCm39)	F119L	probably damaging	Het
Melk	T	C	4: 44,350,959 (GRCm39)	V500A	probably benign	Het
Mrpl41	A	G	2: 24,864,295 (GRCm39)	F126L	probably damaging	Het
Or10c1	C	A	17: 37,522,307 (GRCm39)	A146S	probably benign	Het
Or6c3b	C	T	10: 129,527,699 (GRCm39)	M70I	probably benign	Het
Pax7	A	T	4: 139,506,928 (GRCm39)	S372T	probably benign	Het
Pax7	A	T	4: 139,556,906 (GRCm39)	I118N	probably damaging	Het
Plcl1	G	T	1: 55,735,671 (GRCm39)	M337I	possibly damaging	Het
Poc1a	G	T	9: 106,227,012 (GRCm39)		probably benign	Het
Rabgef1	A	G	5: 130,240,844 (GRCm39)	Y321C	probably damaging	Het
Rhobtb3	A	C	13: 76,061,389 (GRCm39)	L252R	probably benign	Het
Rlf	A	G	4: 121,004,063 (GRCm39)	V1639A	probably benign	Het
Tff1	A	G	17: 31,381,682 (GRCm39)	V65A	probably damaging	Het
Trpm4	G	T	7: 44,971,258 (GRCm39)	D222E	probably damaging	Het
Ttn	A	T	2: 76,643,741 (GRCm39)	D13162E	probably damaging	Het
Unc5d	A	T	8: 29,209,723 (GRCm39)	S466T	probably benign	Het
Vmn1r73	A	G	7: 11,490,683 (GRCm39)	Y167C	probably damaging	Het
Xpr1	T	C	1: 155,204,430 (GRCm39)		probably null	Het
Zbtb40	A	G	4: 136,728,604 (GRCm39)	V413A	possibly damaging	Het

Other mutations in Vwde

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00725:Vwde	APN	6	13,187,411 (GRCm39)	missense	probably benign	0.00
IGL01391:Vwde	APN	6	13,190,526 (GRCm39)	missense	probably benign	0.07
IGL01432:Vwde	APN	6	13,193,239 (GRCm39)	missense	probably benign	0.18
IGL01611:Vwde	APN	6	13,219,977 (GRCm39)	missense	probably damaging	1.00
IGL01835:Vwde	APN	6	13,186,823 (GRCm39)	missense	probably benign	0.43
IGL01993:Vwde	APN	6	13,219,977 (GRCm39)	missense	possibly damaging	0.89
IGL01997:Vwde	APN	6	13,215,705 (GRCm39)	missense	probably damaging	1.00
IGL02390:Vwde	APN	6	13,190,684 (GRCm39)	missense	probably damaging	1.00
IGL02612:Vwde	APN	6	13,187,148 (GRCm39)	missense	probably damaging	1.00
IGL02723:Vwde	APN	6	13,205,759 (GRCm39)	missense	probably damaging	0.99
IGL02731:Vwde	APN	6	13,192,613 (GRCm39)	missense	probably damaging	1.00
IGL02869:Vwde	APN	6	13,187,136 (GRCm39)	missense	probably damaging	1.00
IGL02981:Vwde	APN	6	13,193,112 (GRCm39)	missense	possibly damaging	0.84
IGL03031:Vwde	APN	6	13,208,381 (GRCm39)	missense	probably benign	0.10
IGL03180:Vwde	APN	6	13,205,764 (GRCm39)	missense	probably damaging	1.00
IGL03182:Vwde	APN	6	13,187,138 (GRCm39)	missense	probably damaging	1.00
willy_brandt	UTSW	6	13,208,404 (GRCm39)	splice site	probably null
C9142:Vwde	UTSW	6	13,168,053 (GRCm39)	splice site	probably benign
R0089:Vwde	UTSW	6	13,220,004 (GRCm39)	missense	probably damaging	1.00
R0244:Vwde	UTSW	6	13,193,125 (GRCm39)	missense	probably benign	0.16
R0355:Vwde	UTSW	6	13,187,806 (GRCm39)	splice site	probably benign
R0455:Vwde	UTSW	6	13,187,528 (GRCm39)	missense	probably benign	0.03
R0465:Vwde	UTSW	6	13,215,805 (GRCm39)	splice site	probably benign
R0946:Vwde	UTSW	6	13,187,874 (GRCm39)	missense	probably damaging	1.00
R1087:Vwde	UTSW	6	13,186,803 (GRCm39)	missense	probably damaging	1.00
R1236:Vwde	UTSW	6	13,187,152 (GRCm39)	nonsense	probably null
R1738:Vwde	UTSW	6	13,190,723 (GRCm39)	missense	probably damaging	1.00
R1891:Vwde	UTSW	6	13,187,454 (GRCm39)	missense	probably damaging	0.98
R2014:Vwde	UTSW	6	13,208,337 (GRCm39)	missense	possibly damaging	0.91
R2015:Vwde	UTSW	6	13,208,337 (GRCm39)	missense	possibly damaging	0.91
R2303:Vwde	UTSW	6	13,215,806 (GRCm39)	splice site	probably benign
R3439:Vwde	UTSW	6	13,208,374 (GRCm39)	missense	probably damaging	0.98
R3688:Vwde	UTSW	6	13,186,891 (GRCm39)	missense	probably damaging	0.96
R4457:Vwde	UTSW	6	13,196,100 (GRCm39)	missense	probably damaging	1.00
R4755:Vwde	UTSW	6	13,205,851 (GRCm39)	missense	possibly damaging	0.94
R4849:Vwde	UTSW	6	13,196,047 (GRCm39)	missense	possibly damaging	0.92
R4850:Vwde	UTSW	6	13,196,047 (GRCm39)	missense	possibly damaging	0.92
R4851:Vwde	UTSW	6	13,196,047 (GRCm39)	missense	possibly damaging	0.92
R4853:Vwde	UTSW	6	13,215,639 (GRCm39)	missense	probably damaging	1.00
R4951:Vwde	UTSW	6	13,187,138 (GRCm39)	missense	probably damaging	1.00
R5023:Vwde	UTSW	6	13,192,641 (GRCm39)	missense	possibly damaging	0.48
R5057:Vwde	UTSW	6	13,192,641 (GRCm39)	missense	possibly damaging	0.48
R5126:Vwde	UTSW	6	13,187,259 (GRCm39)	missense	probably benign	0.04
R5154:Vwde	UTSW	6	13,215,757 (GRCm39)	missense	probably benign	0.01
R5277:Vwde	UTSW	6	13,186,995 (GRCm39)	missense	probably benign	0.03
R5432:Vwde	UTSW	6	13,190,591 (GRCm39)	missense	probably damaging	1.00
R5436:Vwde	UTSW	6	13,190,627 (GRCm39)	missense	probably damaging	1.00
R5472:Vwde	UTSW	6	13,193,117 (GRCm39)	missense	probably benign	0.00
R5518:Vwde	UTSW	6	13,186,937 (GRCm39)	missense	probably benign	0.00
R5791:Vwde	UTSW	6	13,195,985 (GRCm39)	nonsense	probably null
R6045:Vwde	UTSW	6	13,219,935 (GRCm39)	missense	probably damaging	1.00
R6262:Vwde	UTSW	6	13,205,020 (GRCm39)	missense	probably damaging	1.00
R6482:Vwde	UTSW	6	13,205,843 (GRCm39)	missense	probably damaging	1.00
R6500:Vwde	UTSW	6	13,208,404 (GRCm39)	splice site	probably null
R6562:Vwde	UTSW	6	13,193,122 (GRCm39)	missense	possibly damaging	0.84
R6905:Vwde	UTSW	6	13,205,926 (GRCm39)	missense	probably damaging	1.00
R7021:Vwde	UTSW	6	13,186,905 (GRCm39)	missense	probably damaging	1.00
R7103:Vwde	UTSW	6	13,215,799 (GRCm39)	missense	probably benign	0.03
R7356:Vwde	UTSW	6	13,192,641 (GRCm39)	missense	probably damaging	0.96
R7434:Vwde	UTSW	6	13,187,639 (GRCm39)	missense	probably benign	0.00
R7492:Vwde	UTSW	6	13,204,980 (GRCm39)	missense	probably null	1.00
R8026:Vwde	UTSW	6	13,205,782 (GRCm39)	missense	probably benign	0.16
R8544:Vwde	UTSW	6	13,187,652 (GRCm39)	missense	probably benign	0.00
R8557:Vwde	UTSW	6	13,193,136 (GRCm39)	missense	probably damaging	1.00
R8995:Vwde	UTSW	6	13,195,996 (GRCm39)	missense	probably damaging	1.00
R9112:Vwde	UTSW	6	13,205,051 (GRCm39)	missense	possibly damaging	0.48

Predicted Primers

PCR Primer
(F):5'- TGCTTGGACAGTTCTAGAAGGAC -3'
(R):5'- AGCTCTCGTTAAAATGTACTTTCCC -3'

Sequencing Primer
(F):5'- GACAGTTCTAGAAGGACGATCTTTG -3'
(R):5'- CCAAGACCTGTTCTTAGATACACGTG -3'

Posted On

2016-06-06