Mutagenetix > Incidental Mutation

Incidental Mutation 'R5093:Ccdc73'

387898

Institutional Source

Beutler Lab

Gene Symbol

Ccdc73

Ensembl Gene

ENSMUSG00000045106

Gene Name

coiled-coil domain containing 73

Synonyms

2210415I11Rik

MMRRC Submission

042682-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.088) question?

Stock #

R5093 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

104867805-105017904 bp(+) (GRCm38)

Type of Mutation

utr 3 prime

DNA Base Change (assembly)

A to T at 105017766 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028592] [ENSMUST00000111110]

AlphaFold

Q8CDM4

Predicted Effect

probably benign
Transcript: ENSMUST00000028592

SMART Domains

Protein: ENSMUSP00000028592
Gene: ENSMUSG00000027170

Domain	Start	End	E-Value	Type
Blast:HDc	119	209	1e-12	BLAST
PINT	268	357	6.42e-26	SMART
low complexity region	358	372	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000111110

SMART Domains

Protein: ENSMUSP00000106739
Gene: ENSMUSG00000027170

Domain	Start	End	E-Value	Type
Blast:HDc	13	77	7e-8	BLAST
PINT	136	225	6.42e-26	SMART
low complexity region	226	240	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130611

Predicted Effect

probably benign
Transcript: ENSMUST00000144358

SMART Domains

Protein: ENSMUSP00000114374
Gene: ENSMUSG00000045106

Domain	Start	End	E-Value	Type
Pfam:CCDC73	1	182	3.1e-77	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.9%
20x: 94.1%

Validation Efficiency

99% (90/91)

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4833420G17Rik	C	T	13: 119,474,037		probably benign	Het
Abca9	A	T	11: 110,141,532	L753Q	probably damaging	Het
Acvrl1	A	G	15: 101,134,747		probably null	Het
Adgrv1	A	T	13: 81,592,585	N141K	probably damaging	Het
Aftph	C	T	11: 20,709,619		probably null	Het
Aifm1	C	T	X: 48,482,760	G371S	probably benign	Het
Aldh3b2	A	G	19: 3,979,433	M269V	probably benign	Het
Ankrd44	T	C	1: 54,763,718	Y207C	probably damaging	Het
Arhgap15	G	T	2: 44,322,755	M412I	probably damaging	Het
Auts2	A	C	5: 131,439,458	L783R	probably damaging	Het
Baiap2l1	A	T	5: 144,278,553	Y381N	probably damaging	Het
Baiap3	T	C	17: 25,250,269	D180G	probably damaging	Het
Cant1	T	C	11: 118,411,212	Y93C	probably damaging	Het
Catsperg2	T	C	7: 29,716,998	S330G	probably benign	Het
Cdc5l	A	T	17: 45,393,041	F752L	possibly damaging	Het
Celsr2	G	T	3: 108,413,373	H708N	possibly damaging	Het
Cep170	T	A	1: 176,769,330	K487M	possibly damaging	Het
Cerkl	A	T	2: 79,333,523	N66K	probably damaging	Het
Clec11a	C	T	7: 44,304,726	A268T	probably damaging	Het
Ctnna2	C	A	6: 77,114,929		probably null	Het
Diaph3	C	A	14: 86,984,800	R416L	probably damaging	Het
Dnmbp	T	A	19: 43,849,876	N1170I	probably damaging	Het
Erbb2	G	T	11: 98,427,453	C505F	probably damaging	Het
Ercc6	T	A	14: 32,567,522	F904L	probably damaging	Het
Exo5	C	T	4: 120,922,317	G117D	probably damaging	Het
F2	CAGAAAG	CAG	2: 91,634,957		probably benign	Het
Fbxl5	A	G	5: 43,773,554	Y64H	probably damaging	Het
Gabra4	T	A	5: 71,640,864	M207L	probably damaging	Het
Galnt15	T	C	14: 32,049,829	L277P	probably damaging	Het
Gclm	T	C	3: 122,255,612		probably null	Het
Gm5493	T	A	17: 22,747,228	C29S	possibly damaging	Het
Grik3	A	G	4: 125,670,589	T455A	probably benign	Het
Grm3	A	G	5: 9,589,766	V93A	probably benign	Het
Hdgfl2	C	T	17: 56,099,217	A535V	possibly damaging	Het
Hfm1	A	T	5: 106,901,731	S455T	probably damaging	Het
Hmcn1	T	A	1: 150,737,256	D1424V	probably benign	Het
Hsd3b6	C	T	3: 98,807,804	V91I	probably benign	Het
Ick	G	A	9: 78,140,021	V68I	probably benign	Het
Igdcc4	G	A	9: 65,122,757	S363N	possibly damaging	Het
Intu	T	C	3: 40,692,917	V740A	probably benign	Het
Itga2	C	T	13: 114,856,181	V838I	probably benign	Het
Kif9	A	G	9: 110,489,897	E143G	probably damaging	Het
Kmt2c	T	A	5: 25,409,207	I172F	probably benign	Het
Kmt2d	G	A	15: 98,856,162	R21W	probably damaging	Het
Mdh1b	A	T	1: 63,711,461	D449E	probably benign	Het
Meis1	T	C	11: 18,881,785	I418V	probably benign	Het
Nags	T	A	11: 102,146,569	M162K	probably damaging	Het
Nufip1	A	G	14: 76,110,973	D14G	probably benign	Het
Olfr135	A	C	17: 38,208,317	E24A	possibly damaging	Het
Olfr166	T	A	16: 19,487,477	I213N	probably damaging	Het
Olfr846	T	G	9: 19,360,978	I126L	probably damaging	Het
Osmr	A	C	15: 6,821,079	V681G	probably damaging	Het
Paxip1	G	T	5: 27,766,284	Q356K	unknown	Het
Pcdhac1	T	A	18: 37,090,542	F136Y	probably damaging	Het
Pla2g6	A	G	15: 79,287,128	V699A	probably benign	Het
Plcb3	A	T	19: 6,966,210	V107E	probably damaging	Het
Plch1	T	A	3: 63,773,715	I164F	probably damaging	Het
Plpp3	A	T	4: 105,194,880	I73F	probably damaging	Het
Plscr5	G	A	9: 92,198,521	R20Q	probably benign	Het
Prdm10	G	A	9: 31,341,483	R504Q	probably damaging	Het
Prss58	T	C	6: 40,897,817	Y30C	probably damaging	Het
Psg19	T	A	7: 18,796,969	T87S	probably benign	Het
Ptpn22	T	G	3: 103,882,102	M294R	probably benign	Het
Rai1	T	A	11: 60,188,656	M1182K	probably benign	Het
Sez6	T	A	11: 77,976,562	V795D	possibly damaging	Het
Shcbp1	A	G	8: 4,739,214	V535A	possibly damaging	Het
Skint9	A	G	4: 112,389,250	Y222H	probably benign	Het
Slc13a3	T	A	2: 165,411,896	I446F	probably damaging	Het
Slc2a3	C	T	6: 122,737,237	R57H	probably damaging	Het
Slc44a4	A	G	17: 34,921,243	D208G	probably benign	Het
Spata31d1b	A	T	13: 59,716,024	N329Y	possibly damaging	Het
Strbp	C	T	2: 37,627,487	R192K	probably damaging	Het
Tctn3	A	T	19: 40,612,104	L14Q	probably damaging	Het
Tenm2	T	A	11: 36,944,162	D2V	probably damaging	Het
Tln2	T	G	9: 67,334,314	K1003T	probably benign	Het
Tmem63b	T	C	17: 45,660,874	E805G	probably damaging	Het
Trhr	A	T	15: 44,197,584	N167Y	probably damaging	Het
Trpc2	A	G	7: 102,095,183	R721G	probably benign	Het
Ttn	C	A	2: 76,870,923		probably benign	Het
Wdr91	A	G	6: 34,892,353	I412T	probably damaging	Het
Zcchc4	T	A	5: 52,796,610	S211T	probably benign	Het

Other mutations in Ccdc73

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00679:Ccdc73	APN	2	104994591	missense	probably damaging	1.00
IGL01313:Ccdc73	APN	2	104907627	missense	probably benign	0.00
IGL02016:Ccdc73	APN	2	104975616	missense	probably benign	0.05
IGL02179:Ccdc73	APN	2	104907568	missense	probably damaging	0.99
FR4304:Ccdc73	UTSW	2	104991840	unclassified	probably benign
FR4737:Ccdc73	UTSW	2	104991840	unclassified	probably benign
IGL03052:Ccdc73	UTSW	2	104951936	missense	possibly damaging	0.78
R0010:Ccdc73	UTSW	2	104980987	splice site	probably benign
R0040:Ccdc73	UTSW	2	104992084	missense	probably damaging	1.00
R0052:Ccdc73	UTSW	2	104929570	splice site	probably benign
R0360:Ccdc73	UTSW	2	104981007	missense	probably damaging	1.00
R0401:Ccdc73	UTSW	2	104991289	missense	probably benign	0.01
R0715:Ccdc73	UTSW	2	104973154	splice site	probably benign
R0839:Ccdc73	UTSW	2	104991097	missense	probably benign	0.05
R1129:Ccdc73	UTSW	2	104992190	missense	possibly damaging	0.51
R1240:Ccdc73	UTSW	2	104991561	missense	probably benign	0.05
R1478:Ccdc73	UTSW	2	104907610	missense	possibly damaging	0.72
R1478:Ccdc73	UTSW	2	104914667	missense	possibly damaging	0.93
R1695:Ccdc73	UTSW	2	104992105	missense	probably damaging	1.00
R1924:Ccdc73	UTSW	2	104992292	missense	probably damaging	1.00
R1950:Ccdc73	UTSW	2	104926935	missense	probably benign	0.01
R1987:Ccdc73	UTSW	2	104931045	nonsense	probably null
R1987:Ccdc73	UTSW	2	104999159	missense	probably damaging	1.00
R2938:Ccdc73	UTSW	2	104975635	nonsense	probably null
R3420:Ccdc73	UTSW	2	104951947	missense	probably null	1.00
R3420:Ccdc73	UTSW	2	104951948	splice site	probably null
R3422:Ccdc73	UTSW	2	104951947	missense	probably null	1.00
R3422:Ccdc73	UTSW	2	104951948	splice site	probably null
R3522:Ccdc73	UTSW	2	104991485	missense	probably damaging	1.00
R3886:Ccdc73	UTSW	2	104991343	missense	possibly damaging	0.94
R4279:Ccdc73	UTSW	2	104985010	missense	possibly damaging	0.87
R4791:Ccdc73	UTSW	2	104981105	splice site	probably null
R4793:Ccdc73	UTSW	2	105017782	splice site	probably null
R4939:Ccdc73	UTSW	2	104992157	splice site	probably null
R4950:Ccdc73	UTSW	2	104992366	missense	probably benign
R5150:Ccdc73	UTSW	2	104992039	missense	probably benign	0.00
R5381:Ccdc73	UTSW	2	104989925	missense	probably damaging	1.00
R5738:Ccdc73	UTSW	2	104930986	missense	possibly damaging	0.78
R6148:Ccdc73	UTSW	2	104992137	missense	possibly damaging	0.58
R6269:Ccdc73	UTSW	2	104907633	missense	probably damaging	1.00
R6738:Ccdc73	UTSW	2	104992088	missense	probably benign	0.00
R6753:Ccdc73	UTSW	2	104991524	nonsense	probably null
R7062:Ccdc73	UTSW	2	104951878	missense	probably damaging	1.00
R7110:Ccdc73	UTSW	2	104973224	missense	probably benign	0.21
R7320:Ccdc73	UTSW	2	104999176	missense	possibly damaging	0.47
R7436:Ccdc73	UTSW	2	104951869	missense	probably damaging	1.00
R7530:Ccdc73	UTSW	2	104994570	missense
R7747:Ccdc73	UTSW	2	104929556	missense	probably damaging	1.00
R7952:Ccdc73	UTSW	2	104945456	critical splice donor site	probably null
R8178:Ccdc73	UTSW	2	104991212	missense	probably benign	0.00
R8824:Ccdc73	UTSW	2	104991877	missense	possibly damaging	0.74
R8927:Ccdc73	UTSW	2	104992197	missense
R8928:Ccdc73	UTSW	2	104992197	missense
R8945:Ccdc73	UTSW	2	104991367	missense	probably benign	0.03
R9365:Ccdc73	UTSW	2	104907666	missense	probably damaging	1.00
Z1177:Ccdc73	UTSW	2	104992239	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- GAATGCTCCCACTTAATTAATAAGGAC -3'
(R):5'- GTAACCCAGTACTCCAGGAAG -3'

Sequencing Primer
(F):5'- ACACAGTGCCTCAGTGTATG -3'
(R):5'- CTCCATCGCTGAGGAAAGTCATG -3'

Posted On

2016-06-06