Mutagenetix > Incidental Mutation

Incidental Mutation 'R5069:Armc9'

388516

Institutional Source

Beutler Lab

Gene Symbol

Armc9

Ensembl Gene

ENSMUSG00000062590

Gene Name

armadillo repeat containing 9

Synonyms

5730415N24Rik, 3830422A13Rik, 4831423D23Rik, 4930438O05Rik

MMRRC Submission

042659-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.523) question?

Stock #

R5069 (G1)

Quality Score

165

Status

Not validated

Chromosome

Chromosomal Location

86154780-86278284 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 86257237 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Leucine at position 670 (H670L)

Ref Sequence

ENSEMBL: ENSMUSP00000108934 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027434] [ENSMUST00000113309] [ENSMUST00000126579] [ENSMUST00000131412] [ENSMUST00000150059] [ENSMUST00000156675]

AlphaFold

Q9D2I5

Predicted Effect

probably benign
Transcript: ENSMUST00000027434
AA Change: H670L

PolyPhen 2 Score 0.027 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000027434
Gene: ENSMUSG00000062590
AA Change: H670L

Domain	Start	End	E-Value	Type
LisH	7	39	1.8e-4	SMART
low complexity region	175	190	N/A	INTRINSIC
coiled coil region	206	242	N/A	INTRINSIC
SCOP:d1jdha_	377	575	8e-14	SMART
low complexity region	793	807	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000113309
AA Change: H670L

PolyPhen 2 Score 0.027 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000108934
Gene: ENSMUSG00000062590
AA Change: H670L

Domain	Start	End	E-Value	Type
LisH	7	39	1.8e-4	SMART
low complexity region	175	190	N/A	INTRINSIC
coiled coil region	206	242	N/A	INTRINSIC
SCOP:d1jdha_	377	575	8e-14	SMART
low complexity region	794	808	N/A	INTRINSIC

Predicted Effect

silent
Transcript: ENSMUST00000126579

Predicted Effect

probably benign
Transcript: ENSMUST00000131412

SMART Domains

Protein: ENSMUSP00000117267
Gene: ENSMUSG00000062590

Domain	Start	End	E-Value	Type
LisH	7	39	1.8e-4	SMART
low complexity region	175	190	N/A	INTRINSIC
coiled coil region	206	242	N/A	INTRINSIC
SCOP:d1jdha_	377	575	4e-13	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135973

Predicted Effect

probably benign
Transcript: ENSMUST00000150059

SMART Domains

Protein: ENSMUSP00000116908
Gene: ENSMUSG00000062590

Domain	Start	End	E-Value	Type
SCOP:d1qbkb_	1	168	4e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000156675

SMART Domains

Protein: ENSMUSP00000119749
Gene: ENSMUSG00000062590

Domain	Start	End	E-Value	Type
SCOP:d1qbkb_	6	100	3e-3	SMART

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.7%
20x: 93.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3425401B19Rik	A	G	14: 32,661,792	S739P	possibly damaging	Het
9330182L06Rik	T	A	5: 9,440,897	C636S	probably damaging	Het
Actn2	A	G	13: 12,288,522	I464T	possibly damaging	Het
Adcy7	T	C	8: 88,327,697	L1060P	probably damaging	Het
Aff3	A	G	1: 38,181,613		probably null	Het
Ankar	T	C	1: 72,680,210		probably null	Het
Ankrd27	A	T	7: 35,628,435	K793N	probably damaging	Het
Arhgef28	T	C	13: 98,075,206	T90A	probably damaging	Het
Arvcf	A	G	16: 18,398,986	Y412C	probably damaging	Het
Ass1	C	T	2: 31,510,173	T301M	probably damaging	Het
Baiap3	A	T	17: 25,249,108	C283S	probably damaging	Het
BC055324	T	C	1: 163,987,674	T93A	possibly damaging	Het
Birc6	C	T	17: 74,565,972	R409C	probably damaging	Het
Calcoco1	A	G	15: 102,711,092	L354P	probably damaging	Het
Cdh3	A	G	8: 106,536,826	N126S	probably benign	Het
Cfap54	A	C	10: 92,937,774	F135L	probably benign	Het
Dlg1	G	T	16: 31,684,295		probably null	Het
Dnah3	T	C	7: 120,032,790	H1314R	probably benign	Het
Dsp	A	C	13: 38,197,123	T2615P	possibly damaging	Het
Enpp2	T	C	15: 54,864,054	Y513C	probably damaging	Het
Ercc6	T	C	14: 32,570,063	V1128A	probably benign	Het
Gipc2	A	G	3: 152,094,248	F282L	probably benign	Het
Gm1043	T	G	5: 37,187,236	L231R	probably damaging	Het
Gm13178	T	A	4: 144,703,867	D184V	probably damaging	Het
Gm14085	A	T	2: 122,494,373	N142I	possibly damaging	Het
Gm14685	T	C	X: 73,127,971	I323T	probably damaging	Het
Gpr153	T	A	4: 152,279,883	M132K	probably damaging	Het
Hbs1l	T	A	10: 21,354,647	S496T	probably damaging	Het
Inpp5f	A	G	7: 128,676,727		probably null	Het
Kat6a	G	A	8: 22,903,133	C209Y	probably damaging	Het
Kcna2	T	A	3: 107,104,637	V178D	probably damaging	Het
Krt75	A	G	15: 101,566,238		probably null	Het
Letm2	G	A	8: 25,593,964	Q84*	probably null	Het
Mib1	A	G	18: 10,793,002	E646G	probably damaging	Het
Mmp14	T	A	14: 54,439,113	Y372N	probably damaging	Het
Muc6	A	G	7: 141,651,299	C218R	probably damaging	Het
Myof	A	T	19: 37,905,325	I1130N	possibly damaging	Het
Neil3	A	G	8: 53,601,041	S318P	possibly damaging	Het
Nhlh1	A	G	1: 172,053,900	V133A	probably benign	Het
Nup153	A	C	13: 46,709,792	S331A	probably benign	Het
Nup98	T	C	7: 102,145,655	T882A	probably benign	Het
Olfr1413	T	A	1: 92,573,413	S81T	probably damaging	Het
Olfr599	A	T	7: 103,338,022		probably null	Het
Olfr744	T	A	14: 50,618,740	C173S	probably damaging	Het
Olfr749	C	A	14: 50,737,074	L29F	probably benign	Het
Otx1	C	A	11: 21,997,037	A91S	probably damaging	Het
Pald1	A	T	10: 61,341,246	M675K	possibly damaging	Het
Pex5	A	G	6: 124,413,596	S97P	probably benign	Het
Pitpnm1	C	T	19: 4,111,140	A897V	probably benign	Het
Plxnd1	A	T	6: 115,965,901	V1274E	probably damaging	Het
Polr2a	T	C	11: 69,736,735		probably null	Het
Ppfia1	G	A	7: 144,514,473	Q446*	probably null	Het
Psma2	G	A	13: 14,616,028	V20I	probably benign	Het
Rhbdl2	T	A	4: 123,817,917	L149*	probably null	Het
Rnf17	T	C	14: 56,505,928	V1317A	probably damaging	Het
Rtel1	G	A	2: 181,355,492	V1042M	probably benign	Het
Sidt2	A	T	9: 45,939,461		probably null	Het
Slc11a1	G	A	1: 74,385,184	A434T	probably damaging	Het
Slc4a10	G	A	2: 62,267,571	R508H	probably benign	Het
Slc5a8	A	T	10: 88,886,598	I98F	possibly damaging	Het
Slf2	T	A	19: 44,935,253	S169T	possibly damaging	Het
Snx33	A	T	9: 56,926,191	I198N	probably damaging	Het
Spock3	A	G	8: 63,355,265	T396A	probably benign	Het
Sva	A	T	6: 42,038,417		probably benign	Het
Syt7	A	G	19: 10,439,237	N261S	probably benign	Het
Taar7b	T	G	10: 24,000,461	S175A	probably benign	Het
Thoc2	C	T	X: 41,806,693	E1491K	probably damaging	Het
Tlr1	T	C	5: 64,926,400	Y278C	probably benign	Het
Tph2	T	A	10: 115,151,174	Y237F	probably benign	Het
Trim35	C	T	14: 66,308,972		probably benign	Het
Trpm4	T	G	7: 45,310,469	Y667S	probably damaging	Het
Ttc27	T	A	17: 74,799,342	H541Q	probably damaging	Het
Ube4a	T	C	9: 44,940,089	H709R	probably damaging	Het
Vwa7	G	A	17: 35,024,190	V615I	probably benign	Het
Wars2	A	G	3: 99,187,533	H48R	probably damaging	Het
Xlr4c	T	A	X: 73,238,684	K121M	probably damaging	Het
Zfc3h1	T	A	10: 115,418,783	C1427*	probably null	Het

Other mutations in Armc9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00468:Armc9	APN	1	86198339	missense	probably damaging	1.00
IGL00771:Armc9	APN	1	86199835	splice site	probably null
IGL01689:Armc9	APN	1	86274418	missense	probably benign
IGL02143:Armc9	APN	1	86176865	missense	possibly damaging	0.58
IGL02680:Armc9	APN	1	86252278	missense	probably damaging	1.00
IGL02812:Armc9	APN	1	86244571	missense	probably damaging	0.99
IGL02887:Armc9	APN	1	86164835	missense	probably damaging	1.00
IGL03011:Armc9	APN	1	86199916	critical splice donor site	probably null
IGL03309:Armc9	APN	1	86274433	missense	possibly damaging	0.54
R0184:Armc9	UTSW	1	86198370	missense	probably damaging	1.00
R0440:Armc9	UTSW	1	86194262	splice site	probably null
R0787:Armc9	UTSW	1	86202505	missense	probably damaging	0.99
R0849:Armc9	UTSW	1	86257270	missense	probably benign	0.00
R1687:Armc9	UTSW	1	86156955	start codon destroyed	probably null	1.00
R1962:Armc9	UTSW	1	86207974	missense	probably damaging	1.00
R2176:Armc9	UTSW	1	86199892	missense	probably damaging	1.00
R3418:Armc9	UTSW	1	86194338	missense	probably damaging	1.00
R3419:Armc9	UTSW	1	86194338	missense	probably damaging	1.00
R4079:Armc9	UTSW	1	86213129	intron	probably benign
R4112:Armc9	UTSW	1	86188939	missense	possibly damaging	0.80
R4151:Armc9	UTSW	1	86164775	missense	probably damaging	1.00
R4675:Armc9	UTSW	1	86202518	missense	probably damaging	1.00
R4934:Armc9	UTSW	1	86213079	missense	probably damaging	1.00
R4944:Armc9	UTSW	1	86274534	missense	probably damaging	0.98
R5070:Armc9	UTSW	1	86257237	missense	probably benign	0.03
R5071:Armc9	UTSW	1	86186116	missense	probably benign	0.01
R5238:Armc9	UTSW	1	86199847	missense	probably benign	0.01
R5386:Armc9	UTSW	1	86198289	missense	probably null	1.00
R5459:Armc9	UTSW	1	86207972	missense	probably damaging	0.97
R6027:Armc9	UTSW	1	86244667	missense	probably damaging	1.00
R6144:Armc9	UTSW	1	86244579	missense	probably benign	0.06
R7111:Armc9	UTSW	1	86159995	missense	probably damaging	1.00
R7237:Armc9	UTSW	1	86164849	missense	possibly damaging	0.82
R7304:Armc9	UTSW	1	86162715	missense	probably benign
R7452:Armc9	UTSW	1	86213092	missense	possibly damaging	0.87
R7555:Armc9	UTSW	1	86275678	missense	probably damaging	1.00
R7805:Armc9	UTSW	1	86196319	missense	probably damaging	1.00
R8490:Armc9	UTSW	1	86274403	missense	probably benign	0.00
R8513:Armc9	UTSW	1	86162683	missense	probably damaging	1.00
R9378:Armc9	UTSW	1	86262044	missense	probably benign
R9439:Armc9	UTSW	1	86156965	missense	possibly damaging	0.46
Z1177:Armc9	UTSW	1	86176825	missense	probably damaging	0.97
Z1177:Armc9	UTSW	1	86196355	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- AGATTTCCTAATGTGTTAGCAGGTG -3'
(R):5'- ATTCTTGAGCCCAGGAGCTC -3'

Sequencing Primer
(F):5'- AAAGGTGCTTGCTTGCCAC -3'
(R):5'- AGCTCAGGACCGGCTTG -3'

Posted On

2016-06-06