Mutagenetix > Incidental Mutation

Incidental Mutation 'R5022:Crim1'

389303

Institutional Source

Beutler Lab

Gene Symbol

Crim1

Ensembl Gene

ENSMUSG00000024074

Gene Name

cysteine rich transmembrane BMP regulator 1 (chordin like)

Synonyms

MMRRC Submission

042613-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5022 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

78200248-78376592 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 78280129 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 221 (V221A)

Ref Sequence

ENSEMBL: ENSMUSP00000108117 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000112498]

AlphaFold

Q9JLL0

Predicted Effect

possibly damaging
Transcript: ENSMUST00000112498
AA Change: V221A

PolyPhen 2 Score 0.949 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000108117
Gene: ENSMUSG00000024074
AA Change: V221A

Domain	Start	End	E-Value	Type
signal peptide	1	34	N/A	INTRINSIC
IB	35	111	1.87e-5	SMART
VWC	336	390	6.04e-13	SMART
VWC	403	456	1.15e-9	SMART
Pfam:Antistasin	469	498	4.5e-10	PFAM
Pfam:Antistasin	505	532	1.5e-8	PFAM
Pfam:Antistasin	539	564	5.7e-9	PFAM
Pfam:Antistasin	567	592	1.7e-10	PFAM
VWC	608	662	1.26e-10	SMART
VWC	679	734	1.37e-11	SMART
VWC	753	808	1.46e-11	SMART
VWC	819	873	1.01e-14	SMART
transmembrane domain	940	962	N/A	INTRINSIC

Meta Mutation Damage Score

0.0639

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.4%
20x: 92.6%

Validation Efficiency

99% (110/111)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a transmembrane protein containing six cysteine-rich repeat domains and an insulin-like growth factor-binding domain. The encoded protein may play a role in tissue development though interactions with members of the transforming growth factor beta family, such as bone morphogenetic proteins. [provided by RefSeq, Nov 2010]
PHENOTYPE: Mutations in this locus cause perinatal lethality, syndactyly, and eye and kidney abnormalities. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 105 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca1	TCGACTGC	T	4: 53,041,570 (GRCm38)		probably null	Het
Abca15	T	C	7: 120,346,096 (GRCm38)	I465T	probably damaging	Het
Abca3	C	T	17: 24,374,300 (GRCm38)	R224C	probably damaging	Het
Abcb4	T	A	5: 8,909,054 (GRCm38)		probably null	Het
Acan	T	C	7: 79,092,808 (GRCm38)		probably null	Het
Aebp2	G	A	6: 140,637,730 (GRCm38)	R109Q	possibly damaging	Het
Agfg2	A	T	5: 137,660,160 (GRCm38)		probably null	Het
Ankib1	T	A	5: 3,734,011 (GRCm38)	I322F	possibly damaging	Het
AW551984	A	T	9: 39,597,965 (GRCm38)	N293K	probably benign	Het
BC028528	T	A	3: 95,888,823 (GRCm38)		probably benign	Het
Bicc1	A	G	10: 70,947,883 (GRCm38)	S393P	possibly damaging	Het
Birc6	A	G	17: 74,692,332 (GRCm38)	Y4656C	probably damaging	Het
Bmp3	A	G	5: 98,872,824 (GRCm38)	R369G	probably damaging	Het
C1d	T	A	11: 17,266,674 (GRCm38)	N135K	probably benign	Het
Ccdc148	G	A	2: 58,827,632 (GRCm38)	A453V	probably damaging	Het
Cd163	C	T	6: 124,325,288 (GRCm38)	T937I	probably damaging	Het
Celf2	C	T	2: 6,607,847 (GRCm38)		probably benign	Het
Chga	T	C	12: 102,562,837 (GRCm38)	W358R	probably damaging	Het
Clec4b2	A	T	6: 123,200,956 (GRCm38)	S77C	probably null	Het
D630003M21Rik	A	T	2: 158,217,633 (GRCm38)	S116T	probably damaging	Het
Dlg5	T	C	14: 24,136,622 (GRCm38)	E1847G	probably damaging	Het
Dmxl1	T	A	18: 49,895,127 (GRCm38)	I2206K	probably damaging	Het
Dusp7	T	A	9: 106,373,741 (GRCm38)	L355Q	probably damaging	Het
Exd2	T	A	12: 80,496,790 (GRCm38)	N582K	probably damaging	Het
Fbln1	G	A	15: 85,237,626 (GRCm38)	S316N	probably damaging	Het
Fchsd1	A	G	18: 37,964,810 (GRCm38)	I340T	possibly damaging	Het
Fn1	T	C	1: 71,624,179 (GRCm38)	Y1050C	probably damaging	Het
Fsip2	A	G	2: 82,979,429 (GRCm38)	I2031V	probably benign	Het
Gm10803	A	C	2: 93,564,172 (GRCm38)	L96F	probably damaging	Het
Gm12169	T	A	11: 46,528,532 (GRCm38)	D58E	probably damaging	Het
Gm14569	T	C	X: 36,430,817 (GRCm38)	D1413G	probably benign	Het
Gm15455	T	C	1: 33,837,351 (GRCm38)		noncoding transcript	Het
Gm1818	G	C	12: 48,555,535 (GRCm38)		noncoding transcript	Het
Gm4907	G	A	X: 23,907,241 (GRCm38)	G327E	probably damaging	Het
Gm5039	T	C	12: 88,321,301 (GRCm38)	I61V	probably benign	Het
Gm5420	A	T	10: 21,691,727 (GRCm38)		noncoding transcript	Het
Gm6803	A	T	12: 88,018,711 (GRCm38)	S21T	unknown	Het
Gm7104	A	T	12: 88,285,759 (GRCm38)		noncoding transcript	Het
Gp2	A	G	7: 119,449,114 (GRCm38)	I427T	probably damaging	Het
Gpc4	G	A	X: 52,074,563 (GRCm38)	R148C	probably damaging	Het
Gpr142	A	C	11: 114,804,388 (GRCm38)	S60R	probably benign	Het
Helz2	T	C	2: 181,240,569 (GRCm38)	R144G	probably benign	Het
Herc1	A	T	9: 66,470,326 (GRCm38)	K3458M	possibly damaging	Het
Hnf4g	G	T	3: 3,644,587 (GRCm38)	A144S	probably damaging	Het
Irs2	A	C	8: 10,987,012 (GRCm38)	*1322G	probably null	Het
Keg1	A	G	19: 12,719,157 (GRCm38)	N288S	probably damaging	Het
Kif19a	G	A	11: 114,767,227 (GRCm38)	M37I	probably benign	Het
Klhl1	G	A	14: 96,136,706 (GRCm38)	P635S	probably benign	Het
Klk14	G	A	7: 43,692,077 (GRCm38)	C51Y	probably damaging	Het
Lsm11	T	C	11: 45,944,839 (GRCm38)	D25G	probably damaging	Het
Manea	A	T	4: 26,336,630 (GRCm38)	Y215*	probably null	Het
Mdga2	C	T	12: 66,470,760 (GRCm38)	C100Y	possibly damaging	Het
Mthfd1	T	G	12: 76,294,374 (GRCm38)	V480G	probably damaging	Het
Mthfd1	T	A	12: 76,301,328 (GRCm38)	M582K	probably damaging	Het
Myh7b	G	C	2: 155,632,373 (GRCm38)	R1669S	possibly damaging	Het
Nanos1	T	C	19: 60,756,980 (GRCm38)	Y239H	probably damaging	Het
Nat8	G	A	6: 85,830,857 (GRCm38)	T98I	possibly damaging	Het
Ndufs3	C	A	2: 90,898,660 (GRCm38)	A161S	probably benign	Het
Nexmif	A	T	X: 104,087,350 (GRCm38)	N320K	probably damaging	Het
Olfr1216	A	G	2: 89,014,043 (GRCm38)	V7A	probably damaging	Het
Olfr1228	C	T	2: 89,249,417 (GRCm38)	M92I	probably benign	Het
Olfr164	A	T	16: 19,286,059 (GRCm38)	V228D	probably damaging	Het
Olfr239	T	C	17: 33,199,777 (GRCm38)	F239S	probably damaging	Het
Olfr457	A	T	6: 42,471,287 (GRCm38)	V297E	possibly damaging	Het
Olfr589	G	A	7: 103,155,735 (GRCm38)	P4L	probably benign	Het
Olfr727	T	C	14: 50,127,012 (GRCm38)	V145A	possibly damaging	Het
Olfr822	T	C	10: 130,074,593 (GRCm38)	L61P	probably damaging	Het
Pcdhb14	T	A	18: 37,450,170 (GRCm38)	N776K	probably benign	Het
Pip5k1c	G	A	10: 81,310,889 (GRCm38)		probably null	Het
Plk4	G	A	3: 40,802,077 (GRCm38)		probably null	Het
Prmt8	A	G	6: 127,711,163 (GRCm38)	Y231H	possibly damaging	Het
Prpf4b	T	C	13: 34,883,599 (GRCm38)		probably benign	Het
Ptpn21	G	A	12: 98,679,407 (GRCm38)	R1091C	probably damaging	Het
Pwwp2b	C	T	7: 139,255,578 (GRCm38)	P312S	possibly damaging	Het
Rad21	A	T	15: 51,966,706 (GRCm38)	I503K	probably benign	Het
Rai14	A	G	15: 10,574,506 (GRCm38)	S789P	probably damaging	Het
Rbm26	C	T	14: 105,144,252 (GRCm38)	D486N	probably damaging	Het
Rnf20	A	G	4: 49,642,016 (GRCm38)		probably benign	Het
Ros1	A	G	10: 52,124,075 (GRCm38)	V1118A	possibly damaging	Het
Sema3d	A	C	5: 12,584,956 (GRCm38)	Y663S	probably damaging	Het
Serpina6	A	G	12: 103,651,712 (GRCm38)	W281R	probably damaging	Het
Slc8a3	A	G	12: 81,199,558 (GRCm38)	V900A	probably damaging	Het
Spats2l	G	T	1: 57,879,556 (GRCm38)	V30L	probably damaging	Het
Spg21	A	G	9: 65,475,949 (GRCm38)	D139G	probably damaging	Het
Sun3	T	C	11: 9,038,314 (GRCm38)	T3A	probably damaging	Het
Tcrg-V1	T	A	13: 19,340,231 (GRCm38)	S42T	probably benign	Het
Tep1	A	G	14: 50,828,999 (GRCm38)	Y2335H	probably benign	Het
Timm21	C	A	18: 84,949,414 (GRCm38)	V112L	possibly damaging	Het
Tlk1	A	T	2: 70,742,065 (GRCm38)	N386K	probably benign	Het
Trappc10	G	T	10: 78,217,160 (GRCm38)	F260L	possibly damaging	Het
Trmt112	T	C	19: 6,910,753 (GRCm38)	V91A	probably benign	Het
Ucp2	A	T	7: 100,498,372 (GRCm38)	N186I	possibly damaging	Het
Vmn1r119	A	G	7: 21,012,320 (GRCm38)	S46P	probably benign	Het
Vmn2r101	A	T	17: 19,611,387 (GRCm38)		probably null	Het
Vmn2r105	T	A	17: 20,208,414 (GRCm38)	H800L	probably damaging	Het
Vmn2r69	T	C	7: 85,411,159 (GRCm38)	M406V	possibly damaging	Het
Vmn2r84	A	G	10: 130,386,548 (GRCm38)	L601P	probably damaging	Het
Vps16	A	G	2: 130,439,452 (GRCm38)	S235G	probably benign	Het
Wap	T	C	11: 6,637,339 (GRCm38)		probably benign	Het
Wdr11	A	G	7: 129,624,711 (GRCm38)	I744M	probably benign	Het
Xiap	T	C	X: 42,094,465 (GRCm38)	F23L	probably benign	Het
Xkr7	A	G	2: 153,054,380 (GRCm38)	T385A	probably benign	Het
Zfp524	A	T	7: 5,018,417 (GRCm38)	I315F	probably benign	Het
Zfp62	T	A	11: 49,215,729 (GRCm38)	S216T	probably damaging	Het
Znfx1	T	C	2: 167,039,826 (GRCm38)	Y217C	probably damaging	Het

Other mutations in Crim1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00815:Crim1	APN	17	78,370,091 (GRCm38)	missense	probably damaging	1.00
IGL01090:Crim1	APN	17	78,347,229 (GRCm38)	missense	probably damaging	0.97
IGL01490:Crim1	APN	17	78,335,296 (GRCm38)	missense	possibly damaging	0.94
IGL01686:Crim1	APN	17	78,344,434 (GRCm38)	missense	probably benign	0.09
IGL01769:Crim1	APN	17	78,313,235 (GRCm38)	missense	probably benign	0.02
IGL02004:Crim1	APN	17	78,372,575 (GRCm38)	splice site	probably benign
IGL02211:Crim1	APN	17	78,355,145 (GRCm38)	missense	probably damaging	1.00
IGL02275:Crim1	APN	17	78,369,998 (GRCm38)	missense	possibly damaging	0.56
IGL02408:Crim1	APN	17	78,315,654 (GRCm38)	missense	possibly damaging	0.78
IGL02411:Crim1	APN	17	78,335,334 (GRCm38)	nonsense	probably null
IGL02453:Crim1	APN	17	78,344,484 (GRCm38)	missense	probably damaging	1.00
IGL02481:Crim1	APN	17	78,350,798 (GRCm38)	missense	probably damaging	0.98
IGL02632:Crim1	APN	17	78,372,674 (GRCm38)	missense	probably benign	0.08
IGL02652:Crim1	APN	17	78,315,677 (GRCm38)	missense	probably damaging	1.00
IGL02696:Crim1	APN	17	78,279,973 (GRCm38)	missense	probably damaging	0.96
IGL02811:Crim1	APN	17	78,350,701 (GRCm38)	missense	possibly damaging	0.62
IGL03105:Crim1	APN	17	78,315,750 (GRCm38)	splice site	probably benign
IGL03349:Crim1	APN	17	78,355,150 (GRCm38)	nonsense	probably null
bugeye	UTSW	17	78,281,347 (GRCm38)	missense	possibly damaging	0.94
IGL03097:Crim1	UTSW	17	78,367,798 (GRCm38)	missense	probably benign	0.00
R0227:Crim1	UTSW	17	78,344,509 (GRCm38)	splice site	probably benign
R0458:Crim1	UTSW	17	78,313,226 (GRCm38)	missense	probably damaging	0.98
R0482:Crim1	UTSW	17	78,372,579 (GRCm38)	missense	probably benign	0.00
R0989:Crim1	UTSW	17	78,200,944 (GRCm38)	missense	probably benign	0.21
R1266:Crim1	UTSW	17	78,200,833 (GRCm38)	small deletion	probably benign
R1529:Crim1	UTSW	17	78,367,954 (GRCm38)	missense	probably benign
R1679:Crim1	UTSW	17	78,200,799 (GRCm38)	missense	probably benign	0.27
R1909:Crim1	UTSW	17	78,313,127 (GRCm38)	missense	probably benign	0.26
R2273:Crim1	UTSW	17	78,355,179 (GRCm38)	critical splice donor site	probably null
R3899:Crim1	UTSW	17	78,281,354 (GRCm38)	missense	probably benign	0.00
R3909:Crim1	UTSW	17	78,281,239 (GRCm38)	splice site	probably benign
R4092:Crim1	UTSW	17	78,350,836 (GRCm38)	missense	probably damaging	1.00
R4154:Crim1	UTSW	17	78,237,843 (GRCm38)	missense	probably benign	0.01
R4687:Crim1	UTSW	17	78,303,025 (GRCm38)	missense	probably damaging	1.00
R5073:Crim1	UTSW	17	78,281,347 (GRCm38)	missense	possibly damaging	0.94
R5089:Crim1	UTSW	17	78,374,090 (GRCm38)	missense	probably damaging	1.00
R5284:Crim1	UTSW	17	78,313,266 (GRCm38)	missense	possibly damaging	0.83
R5461:Crim1	UTSW	17	78,237,807 (GRCm38)	missense	probably damaging	1.00
R5635:Crim1	UTSW	17	78,315,641 (GRCm38)	missense	probably damaging	1.00
R5686:Crim1	UTSW	17	78,374,083 (GRCm38)	missense	possibly damaging	0.63
R5956:Crim1	UTSW	17	78,315,717 (GRCm38)	missense	probably damaging	1.00
R6117:Crim1	UTSW	17	78,303,088 (GRCm38)	missense	probably damaging	1.00
R6129:Crim1	UTSW	17	78,281,309 (GRCm38)	missense	probably benign	0.17
R6265:Crim1	UTSW	17	78,370,085 (GRCm38)	missense	probably benign	0.01
R6812:Crim1	UTSW	17	78,315,600 (GRCm38)	missense	probably damaging	1.00
R6858:Crim1	UTSW	17	78,315,627 (GRCm38)	missense	probably damaging	1.00
R7920:Crim1	UTSW	17	78,303,064 (GRCm38)	missense	probably damaging	1.00
R8022:Crim1	UTSW	17	78,315,555 (GRCm38)	missense	possibly damaging	0.82
R8434:Crim1	UTSW	17	78,347,257 (GRCm38)	missense	probably benign	0.00
R8782:Crim1	UTSW	17	78,200,877 (GRCm38)	missense	probably damaging	1.00
R8961:Crim1	UTSW	17	78,372,688 (GRCm38)	missense	possibly damaging	0.65
R8971:Crim1	UTSW	17	78,345,980 (GRCm38)	missense	possibly damaging	0.89
R9245:Crim1	UTSW	17	78,344,442 (GRCm38)	missense	probably damaging	1.00
R9250:Crim1	UTSW	17	78,370,042 (GRCm38)	missense	probably benign
R9401:Crim1	UTSW	17	78,350,865 (GRCm38)	frame shift	probably null
R9402:Crim1	UTSW	17	78,350,865 (GRCm38)	frame shift	probably null
R9644:Crim1	UTSW	17	78,280,068 (GRCm38)	missense	probably damaging	1.00
R9702:Crim1	UTSW	17	78,374,087 (GRCm38)	missense	probably damaging	1.00
R9710:Crim1	UTSW	17	78,303,075 (GRCm38)	nonsense	probably null
X0064:Crim1	UTSW	17	78,200,833 (GRCm38)	small deletion	probably benign
Z1088:Crim1	UTSW	17	78,367,835 (GRCm38)	missense	probably benign	0.31

Predicted Primers

PCR Primer
(F):5'- CCTCGGGCATGAGCTTTTAAATTC -3'
(R):5'- CTGAAGTGAGAAGTTACCCAAAGC -3'

Sequencing Primer
(F):5'- CTTTCTCTCCCATTTAGAAGAGAAGC -3'
(R):5'- GTTACCCAAAGCAGCAAGATTATG -3'

Posted On

2016-06-06