Incidental Mutation 'R5033:Pigr'
ID 389321
Institutional Source Beutler Lab
Gene Symbol Pigr
Ensembl Gene ENSMUSG00000026417
Gene Name polymeric immunoglobulin receptor
Synonyms
MMRRC Submission 042624-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.058) question?
Stock # R5033 (G1)
Quality Score 225
Status Not validated
Chromosome 1
Chromosomal Location 130754421-130779986 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 130772436 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Phenylalanine at position 218 (Y218F)
Ref Sequence ENSEMBL: ENSMUSP00000027675 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000027675] [ENSMUST00000133792] [ENSMUST00000137782]
AlphaFold O70570
PDB Structure Crystal structure of the 1st Ig domain from mouse Polymeric Immunoglobulin receptor [PSI-NYSGRC-006220] [X-RAY DIFFRACTION]
Crystal structure of the second Ig domain from mouse Polymeric Immunoglobulin receptor [PSI-NYSGRC-006220] [X-RAY DIFFRACTION]
Predicted Effect probably damaging
Transcript: ENSMUST00000027675
AA Change: Y218F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000027675
Gene: ENSMUSG00000026417
AA Change: Y218F

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
IG 25 128 1.6e-8 SMART
IG 137 238 8.1e-8 SMART
IG 242 346 1.4e-3 SMART
IG 355 457 3.1e-5 SMART
IG 469 563 1e-10 SMART
IG_like 483 548 8e-3 SMART
low complexity region 627 644 N/A INTRINSIC
transmembrane domain 646 668 N/A INTRINSIC
low complexity region 730 746 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000133792
SMART Domains Protein: ENSMUSP00000121686
Gene: ENSMUSG00000026417

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
IG 25 128 1.6e-8 SMART
Blast:IG 137 210 3e-47 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000137782
SMART Domains Protein: ENSMUSP00000114334
Gene: ENSMUSG00000026417

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
IG 25 128 3.91e-6 SMART
Blast:IG 137 201 4e-40 BLAST
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.4%
  • 10x: 96.4%
  • 20x: 92.8%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the immunoglobulin superfamily. The encoded poly-Ig receptor binds polymeric immunoglobulin molecules at the basolateral surface of epithelial cells; the complex is then transported across the cell to be secreted at the apical surface. A significant association was found between immunoglobulin A nephropathy and several SNPs in this gene.[provided by RefSeq, Sep 2009]
PHENOTYPE: Nullizygous mice show impaired transepithelial transport of dimeric IgA, increased serum IgA levels and mucosal leakiness. Studies of one null allele show increased susceptibility to mycobacterial infections while another allele causes impaired clearanceof the protozoan parasite Giardia. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 88 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700012B07Rik G T 11: 109,684,980 (GRCm39) C172* probably null Het
9930111J21Rik1 G A 11: 48,838,533 (GRCm39) R685W probably damaging Het
Arhgap10 A T 8: 78,109,386 (GRCm39) L399H probably damaging Het
Arih2 AGCCG AG 9: 108,488,859 (GRCm39) probably benign Het
Atp13a2 A G 4: 140,728,132 (GRCm39) H575R possibly damaging Het
Bbof1 G A 12: 84,458,044 (GRCm39) probably null Het
Bltp3a A G 17: 28,105,838 (GRCm39) E788G probably damaging Het
Catsperg2 A C 7: 29,409,559 (GRCm39) Y545D possibly damaging Het
Cdc42bpa T A 1: 179,892,580 (GRCm39) I248N probably damaging Het
Cdk11b A T 4: 155,733,282 (GRCm39) probably benign Het
Cfap46 C A 7: 139,183,776 (GRCm39) L90F probably benign Het
Cndp2 A G 18: 84,688,954 (GRCm39) L276P possibly damaging Het
Col3a1 A C 1: 45,385,270 (GRCm39) D129A probably damaging Het
Daam1 C A 12: 71,993,294 (GRCm39) H354Q unknown Het
Dnah5 T A 15: 28,421,824 (GRCm39) F3892Y probably damaging Het
Dnajb3 A G 1: 88,132,745 (GRCm39) V219A possibly damaging Het
Drd5 A G 5: 38,477,544 (GRCm39) H179R probably damaging Het
Dym A G 18: 75,252,232 (GRCm39) N333D possibly damaging Het
Eif2b3 A G 4: 116,909,933 (GRCm39) D156G probably damaging Het
Emc1 A G 4: 139,099,007 (GRCm39) D830G probably damaging Het
F13a1 A C 13: 37,172,830 (GRCm39) I183M probably damaging Het
Fam136b-ps T A 15: 31,277,043 (GRCm39) probably benign Het
Fdft1 C A 14: 63,400,853 (GRCm39) K93N probably damaging Het
Garre1 C T 7: 33,945,237 (GRCm39) G336S probably benign Het
Gcc2 A G 10: 58,114,628 (GRCm39) D959G probably damaging Het
Gp2 A G 7: 119,053,514 (GRCm39) V149A probably damaging Het
Gpc1 G A 1: 92,784,751 (GRCm39) G308D probably damaging Het
Hdac9 A T 12: 34,423,906 (GRCm39) C587S probably benign Het
Hspg2 C T 4: 137,246,251 (GRCm39) R1010C probably damaging Het
Iars2 A G 1: 185,050,125 (GRCm39) V453A possibly damaging Het
Il1r1 T G 1: 40,332,684 (GRCm39) C121W probably damaging Het
Inhca A G 9: 103,156,613 (GRCm39) V149A probably benign Het
Jazf1 A G 6: 52,754,525 (GRCm39) Y184H probably damaging Het
Kel A T 6: 41,675,989 (GRCm39) Y234N probably damaging Het
Khk G A 5: 31,087,004 (GRCm39) G186D probably damaging Het
Klf4 A T 4: 55,530,301 (GRCm39) M270K probably benign Het
Kmt2c G A 5: 25,519,706 (GRCm39) L2135F probably benign Het
Krtap15-1 A G 16: 88,626,044 (GRCm39) Y37C probably damaging Het
Lars1 A G 18: 42,347,841 (GRCm39) F994S possibly damaging Het
Ldc1 C T 4: 130,115,408 (GRCm39) probably null Het
Lrp8 T C 4: 107,691,952 (GRCm39) probably null Het
Lrrc2 A T 9: 110,809,987 (GRCm39) D341V probably damaging Het
Map4k4 A G 1: 40,046,662 (GRCm39) K646R probably damaging Het
Mrps9 T A 1: 42,934,491 (GRCm39) probably null Het
Or10ag60 T A 2: 87,438,055 (GRCm39) C108S probably damaging Het
Or11h6 T A 14: 50,880,619 (GRCm39) Y288N probably damaging Het
Or8c20 C T 9: 38,260,924 (GRCm39) H176Y probably damaging Het
Pcnt A T 10: 76,235,779 (GRCm39) C1401S possibly damaging Het
Pdgfrb A T 18: 61,210,740 (GRCm39) K749M probably damaging Het
Pigo A T 4: 43,019,412 (GRCm39) W969R probably null Het
Pih1d1 A G 7: 44,804,278 (GRCm39) probably benign Het
Pik3cg A T 12: 32,249,195 (GRCm39) probably null Het
Pik3r6 A T 11: 68,424,294 (GRCm39) K300* probably null Het
Pip5k1c A G 10: 81,141,084 (GRCm39) D64G probably damaging Het
Piwil2 A T 14: 70,659,042 (GRCm39) I161K possibly damaging Het
Pou3f1 A G 4: 124,552,449 (GRCm39) E317G probably damaging Het
Prdm8 C T 5: 98,333,071 (GRCm39) Q213* probably null Het
Prpf6 T A 2: 181,291,899 (GRCm39) C739S possibly damaging Het
Psmc3 T A 2: 90,884,953 (GRCm39) S40T probably benign Het
Psmd3 A T 11: 98,573,650 (GRCm39) D32V probably damaging Het
Ptpro T A 6: 137,420,592 (GRCm39) V1007D probably damaging Het
Rapgef6 A T 11: 54,582,207 (GRCm39) H1373L possibly damaging Het
Rnf207 A C 4: 152,397,666 (GRCm39) S328A probably benign Het
Ros1 C T 10: 52,004,512 (GRCm39) probably null Het
Ryr2 T A 13: 11,602,140 (GRCm39) I4581F possibly damaging Het
Sacm1l C T 9: 123,415,464 (GRCm39) R480W probably damaging Het
Sec16a A G 2: 26,309,661 (GRCm39) V664A probably benign Het
Selenoo T A 15: 88,976,969 (GRCm39) M207K probably damaging Het
Sh3tc2 G A 18: 62,147,962 (GRCm39) probably null Het
Slc28a2b T A 2: 122,353,395 (GRCm39) probably null Het
Slco2b1 G T 7: 99,309,256 (GRCm39) Q692K probably benign Het
Slfn4 A T 11: 83,077,623 (GRCm39) D137V probably damaging Het
Srrm2 G A 17: 24,039,592 (GRCm39) A2175T probably damaging Het
Stard9 T A 2: 120,523,880 (GRCm39) C692S probably benign Het
Sulf2 T A 2: 165,923,542 (GRCm39) D559V probably benign Het
Tbpl2 T C 2: 23,977,170 (GRCm39) I283V probably benign Het
Tmem19 A G 10: 115,195,666 (GRCm39) F46S probably benign Het
Trp63 T A 16: 25,582,056 (GRCm39) Y35N probably damaging Het
Ttn T A 2: 76,716,786 (GRCm39) probably benign Het
Ube2z A T 11: 95,941,148 (GRCm39) H331Q probably benign Het
Ubr1 C T 2: 120,742,478 (GRCm39) probably null Het
Vmn1r235 A T 17: 21,482,550 (GRCm39) I292F possibly damaging Het
Vmn2r1 T A 3: 64,012,501 (GRCm39) D787E probably damaging Het
Vmn2r3 A G 3: 64,167,220 (GRCm39) V637A probably benign Het
Xpnpep1 C A 19: 52,994,606 (GRCm39) V341L probably benign Het
Yme1l1 A G 2: 23,084,759 (GRCm39) D619G probably damaging Het
Zfp597 G A 16: 3,684,502 (GRCm39) P85S probably damaging Het
Zscan20 A G 4: 128,479,921 (GRCm39) S857P probably benign Het
Other mutations in Pigr
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00815:Pigr APN 1 130,762,167 (GRCm39) start codon destroyed probably null 1.00
IGL01565:Pigr APN 1 130,772,211 (GRCm39) missense possibly damaging 0.93
IGL01592:Pigr APN 1 130,776,795 (GRCm39) missense probably damaging 1.00
IGL02153:Pigr APN 1 130,776,793 (GRCm39) splice site probably null
IGL02508:Pigr APN 1 130,778,595 (GRCm39) missense probably benign 0.02
IGL02815:Pigr APN 1 130,769,558 (GRCm39) missense probably damaging 1.00
R0834:Pigr UTSW 1 130,772,281 (GRCm39) nonsense probably null
R1453:Pigr UTSW 1 130,769,281 (GRCm39) missense probably benign 0.00
R1728:Pigr UTSW 1 130,772,259 (GRCm39) missense possibly damaging 0.50
R1729:Pigr UTSW 1 130,772,259 (GRCm39) missense possibly damaging 0.50
R1730:Pigr UTSW 1 130,772,259 (GRCm39) missense possibly damaging 0.50
R1736:Pigr UTSW 1 130,769,540 (GRCm39) missense possibly damaging 0.71
R1739:Pigr UTSW 1 130,772,259 (GRCm39) missense possibly damaging 0.50
R1742:Pigr UTSW 1 130,772,823 (GRCm39) missense probably damaging 1.00
R1762:Pigr UTSW 1 130,772,259 (GRCm39) missense possibly damaging 0.50
R1783:Pigr UTSW 1 130,772,259 (GRCm39) missense possibly damaging 0.50
R1784:Pigr UTSW 1 130,772,259 (GRCm39) missense possibly damaging 0.50
R1785:Pigr UTSW 1 130,772,259 (GRCm39) missense possibly damaging 0.50
R1929:Pigr UTSW 1 130,774,399 (GRCm39) unclassified probably benign
R2065:Pigr UTSW 1 130,778,617 (GRCm39) missense probably benign 0.20
R2275:Pigr UTSW 1 130,774,207 (GRCm39) missense probably benign 0.00
R2513:Pigr UTSW 1 130,774,357 (GRCm39) missense possibly damaging 0.71
R2910:Pigr UTSW 1 130,777,270 (GRCm39) missense probably damaging 1.00
R2911:Pigr UTSW 1 130,777,270 (GRCm39) missense probably damaging 1.00
R2964:Pigr UTSW 1 130,769,272 (GRCm39) missense probably damaging 1.00
R3857:Pigr UTSW 1 130,774,998 (GRCm39) missense probably benign 0.06
R4165:Pigr UTSW 1 130,769,554 (GRCm39) missense probably benign 0.26
R4166:Pigr UTSW 1 130,769,554 (GRCm39) missense probably benign 0.26
R4303:Pigr UTSW 1 130,769,554 (GRCm39) missense probably benign 0.26
R4735:Pigr UTSW 1 130,774,291 (GRCm39) missense probably damaging 0.99
R4909:Pigr UTSW 1 130,776,195 (GRCm39) missense possibly damaging 0.77
R4993:Pigr UTSW 1 130,769,554 (GRCm39) missense probably benign 0.26
R4994:Pigr UTSW 1 130,769,554 (GRCm39) missense probably benign 0.26
R5116:Pigr UTSW 1 130,776,768 (GRCm39) missense probably benign 0.00
R5304:Pigr UTSW 1 130,777,230 (GRCm39) missense probably benign 0.00
R5440:Pigr UTSW 1 130,777,359 (GRCm39) splice site probably null
R5853:Pigr UTSW 1 130,774,341 (GRCm39) nonsense probably null
R5934:Pigr UTSW 1 130,772,264 (GRCm39) missense probably damaging 0.98
R6015:Pigr UTSW 1 130,774,998 (GRCm39) missense probably benign 0.06
R6291:Pigr UTSW 1 130,769,498 (GRCm39) missense probably benign 0.06
R6749:Pigr UTSW 1 130,774,285 (GRCm39) missense probably benign 0.14
R6941:Pigr UTSW 1 130,775,064 (GRCm39) missense probably damaging 1.00
R7369:Pigr UTSW 1 130,769,503 (GRCm39) missense probably benign 0.00
R7391:Pigr UTSW 1 130,777,303 (GRCm39) missense probably damaging 1.00
R7564:Pigr UTSW 1 130,769,403 (GRCm39) missense possibly damaging 0.67
R7760:Pigr UTSW 1 130,774,368 (GRCm39) missense possibly damaging 0.59
R7995:Pigr UTSW 1 130,769,423 (GRCm39) missense probably damaging 1.00
R8094:Pigr UTSW 1 130,774,247 (GRCm39) missense probably damaging 1.00
R8096:Pigr UTSW 1 130,774,247 (GRCm39) missense probably damaging 1.00
R9068:Pigr UTSW 1 130,774,231 (GRCm39) missense probably damaging 0.96
R9312:Pigr UTSW 1 130,762,185 (GRCm39) missense probably benign 0.16
R9460:Pigr UTSW 1 130,772,403 (GRCm39) missense probably damaging 1.00
R9578:Pigr UTSW 1 130,777,350 (GRCm39) missense probably benign 0.36
R9743:Pigr UTSW 1 130,769,540 (GRCm39) missense possibly damaging 0.71
Z1176:Pigr UTSW 1 130,778,552 (GRCm39) missense possibly damaging 0.76
Predicted Primers PCR Primer
(F):5'- CCCAGCAAGAAATCCCTGTGTAAG -3'
(R):5'- TGCCCTCAAAGTCTGGATCC -3'

Sequencing Primer
(F):5'- CTGTGTAAGAAGACAAACCAGTCCTG -3'
(R):5'- CCCAGGGTGTTAATGATCACATC -3'
Posted On 2016-06-06