Mutagenetix > Incidental Mutation

Incidental Mutation 'R5033:Xpnpep1'

389420

Institutional Source

Beutler Lab

Gene Symbol

Xpnpep1

Ensembl Gene

ENSMUSG00000025027

Gene Name

X-prolyl aminopeptidase (aminopeptidase P) 1, soluble

Synonyms

D230045I08Rik

MMRRC Submission

042624-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5033 (G1)

Quality Score

152

Status

Not validated

Chromosome

Chromosomal Location

52943417-53040214 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 53006175 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Leucine at position 341 (V341L)

Ref Sequence

ENSEMBL: ENSMUSP00000138233 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000182500] [ENSMUST00000183108] [ENSMUST00000183274]

AlphaFold

Q6P1B1

Predicted Effect

probably benign
Transcript: ENSMUST00000182500

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000182534

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000182877

Predicted Effect

probably benign
Transcript: ENSMUST00000183108
AA Change: V341L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000138250
Gene: ENSMUSG00000025027
AA Change: V341L

Domain	Start	End	E-Value	Type
Pfam:Creatinase_N	53	198	1.2e-17	PFAM
Pfam:Peptidase_M24	371	587	5.5e-49	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000183188

Predicted Effect

probably benign
Transcript: ENSMUST00000183274
AA Change: V341L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000138233
Gene: ENSMUSG00000025027
AA Change: V341L

Domain	Start	End	E-Value	Type
Pfam:Creatinase_N	53	198	1.2e-17	PFAM
Pfam:Peptidase_M24	371	587	1.9e-48	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000184510

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.4%
20x: 92.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes the cytosolic form of a metalloaminopeptidase that catalyzes the cleavage of the N-terminal amino acid adjacent to a proline residue. The gene product may play a role in degradation and maturation of tachykinins, neuropeptides, and peptide hormones. Alternative splicing results in multiple transcript variants.[provided by RefSeq, Nov 2009]
PHENOTYPE: Mice homozygous for a gene trap allele exhibit pre and postnatal lethality, reduced male survival, growth retardation with decreased body weight, size and length, microcephaly and peptiduria. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 88 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700012B07Rik	G	T	11: 109,794,154 (GRCm38)	C172*	probably null	Het
9930111J21Rik1	G	A	11: 48,947,706 (GRCm38)	R685W	probably damaging	Het
Arhgap10	A	T	8: 77,382,757 (GRCm38)	L399H	probably damaging	Het
Arih2	AGCCG	AG	9: 108,611,660 (GRCm38)		probably benign	Het
Atp13a2	A	G	4: 141,000,821 (GRCm38)	H575R	possibly damaging	Het
Bbof1	G	A	12: 84,411,270 (GRCm38)		probably null	Het
Bltp3a	A	G	17: 27,886,864 (GRCm38)	E788G	probably damaging	Het
Catsperg2	A	C	7: 29,710,134 (GRCm38)	Y545D	possibly damaging	Het
Cdc42bpa	T	A	1: 180,065,015 (GRCm38)	I248N	probably damaging	Het
Cdk11b	A	T	4: 155,648,825 (GRCm38)		probably benign	Het
Cfap46	C	A	7: 139,603,860 (GRCm38)	L90F	probably benign	Het
Cndp2	A	G	18: 84,670,829 (GRCm38)	L276P	possibly damaging	Het
Col3a1	A	C	1: 45,346,110 (GRCm38)	D129A	probably damaging	Het
Daam1	C	A	12: 71,946,520 (GRCm38)	H354Q	unknown	Het
Dnah5	T	A	15: 28,421,678 (GRCm38)	F3892Y	probably damaging	Het
Dnajb3	A	G	1: 88,205,023 (GRCm38)	V219A	possibly damaging	Het
Drd5	A	G	5: 38,320,201 (GRCm38)	H179R	probably damaging	Het
Dym	A	G	18: 75,119,161 (GRCm38)	N333D	possibly damaging	Het
Eif2b3	A	G	4: 117,052,736 (GRCm38)	D156G	probably damaging	Het
Emc1	A	G	4: 139,371,696 (GRCm38)	D830G	probably damaging	Het
F13a1	A	C	13: 36,988,856 (GRCm38)	I183M	probably damaging	Het
Fam136b-ps	T	A	15: 31,276,897 (GRCm38)		probably benign	Het
Fdft1	C	A	14: 63,163,404 (GRCm38)	K93N	probably damaging	Het
Garre1	C	T	7: 34,245,812 (GRCm38)	G336S	probably benign	Het
Gcc2	A	G	10: 58,278,806 (GRCm38)	D959G	probably damaging	Het
Gp2	A	G	7: 119,454,291 (GRCm38)	V149A	probably damaging	Het
Gpc1	G	A	1: 92,857,029 (GRCm38)	G308D	probably damaging	Het
Hdac9	A	T	12: 34,373,907 (GRCm38)	C587S	probably benign	Het
Hspg2	C	T	4: 137,518,940 (GRCm38)	R1010C	probably damaging	Het
Iars2	A	G	1: 185,317,928 (GRCm38)	V453A	possibly damaging	Het
Il1r1	T	G	1: 40,293,524 (GRCm38)	C121W	probably damaging	Het
Inhca	A	G	9: 103,279,414 (GRCm38)	V149A	probably benign	Het
Jazf1	A	G	6: 52,777,540 (GRCm38)	Y184H	probably damaging	Het
Kel	A	T	6: 41,699,055 (GRCm38)	Y234N	probably damaging	Het
Khk	G	A	5: 30,929,660 (GRCm38)	G186D	probably damaging	Het
Klf4	A	T	4: 55,530,301 (GRCm38)	M270K	probably benign	Het
Kmt2c	G	A	5: 25,314,708 (GRCm38)	L2135F	probably benign	Het
Krtap15-1	A	G	16: 88,829,156 (GRCm38)	Y37C	probably damaging	Het
Lars1	A	G	18: 42,214,776 (GRCm38)	F994S	possibly damaging	Het
Ldc1	C	T	4: 130,221,615 (GRCm38)		probably null	Het
Lrp8	T	C	4: 107,834,755 (GRCm38)		probably null	Het
Lrrc2	A	T	9: 110,980,919 (GRCm38)	D341V	probably damaging	Het
Map4k4	A	G	1: 40,007,502 (GRCm38)	K646R	probably damaging	Het
Mrps9	T	A	1: 42,895,331 (GRCm38)		probably null	Het
Or10ag60	T	A	2: 87,607,711 (GRCm38)	C108S	probably damaging	Het
Or11h6	T	A	14: 50,643,162 (GRCm38)	Y288N	probably damaging	Het
Or8c20	C	T	9: 38,349,628 (GRCm38)	H176Y	probably damaging	Het
Pcnt	A	T	10: 76,399,945 (GRCm38)	C1401S	possibly damaging	Het
Pdgfrb	A	T	18: 61,077,668 (GRCm38)	K749M	probably damaging	Het
Pigo	A	T	4: 43,019,412 (GRCm38)	W969R	probably null	Het
Pigr	A	T	1: 130,844,699 (GRCm38)	Y218F	probably damaging	Het
Pih1d1	A	G	7: 45,154,854 (GRCm38)		probably benign	Het
Pik3cg	A	T	12: 32,199,196 (GRCm38)		probably null	Het
Pik3r6	A	T	11: 68,533,468 (GRCm38)	K300*	probably null	Het
Pip5k1c	A	G	10: 81,305,250 (GRCm38)	D64G	probably damaging	Het
Piwil2	A	T	14: 70,421,593 (GRCm38)	I161K	possibly damaging	Het
Pou3f1	A	G	4: 124,658,656 (GRCm38)	E317G	probably damaging	Het
Prdm8	C	T	5: 98,185,212 (GRCm38)	Q213*	probably null	Het
Prpf6	T	A	2: 181,650,106 (GRCm38)	C739S	possibly damaging	Het
Psmc3	T	A	2: 91,054,608 (GRCm38)	S40T	probably benign	Het
Psmd3	A	T	11: 98,682,824 (GRCm38)	D32V	probably damaging	Het
Ptpro	T	A	6: 137,443,594 (GRCm38)	V1007D	probably damaging	Het
Rapgef6	A	T	11: 54,691,381 (GRCm38)	H1373L	possibly damaging	Het
Rnf207	A	C	4: 152,313,209 (GRCm38)	S328A	probably benign	Het
Ros1	C	T	10: 52,128,416 (GRCm38)		probably null	Het
Ryr2	T	A	13: 11,587,254 (GRCm38)	I4581F	possibly damaging	Het
Sacm1l	C	T	9: 123,586,399 (GRCm38)	R480W	probably damaging	Het
Sec16a	A	G	2: 26,419,649 (GRCm38)	V664A	probably benign	Het
Selenoo	T	A	15: 89,092,766 (GRCm38)	M207K	probably damaging	Het
Sh3tc2	G	A	18: 62,014,891 (GRCm38)		probably null	Het
Slc28a2b	T	A	2: 122,522,914 (GRCm38)		probably null	Het
Slco2b1	G	T	7: 99,660,049 (GRCm38)	Q692K	probably benign	Het
Slfn4	A	T	11: 83,186,797 (GRCm38)	D137V	probably damaging	Het
Srrm2	G	A	17: 23,820,618 (GRCm38)	A2175T	probably damaging	Het
Stard9	T	A	2: 120,693,399 (GRCm38)	C692S	probably benign	Het
Sulf2	T	A	2: 166,081,622 (GRCm38)	D559V	probably benign	Het
Tbpl2	T	C	2: 24,087,158 (GRCm38)	I283V	probably benign	Het
Tmem19	A	G	10: 115,359,761 (GRCm38)	F46S	probably benign	Het
Trp63	T	A	16: 25,763,306 (GRCm38)	Y35N	probably damaging	Het
Ttn	T	A	2: 76,886,442 (GRCm38)		probably benign	Het
Ube2z	A	T	11: 96,050,322 (GRCm38)	H331Q	probably benign	Het
Ubr1	C	T	2: 120,911,997 (GRCm38)		probably null	Het
Vmn1r235	A	T	17: 21,262,288 (GRCm38)	I292F	possibly damaging	Het
Vmn2r1	T	A	3: 64,105,080 (GRCm38)	D787E	probably damaging	Het
Vmn2r3	A	G	3: 64,259,799 (GRCm38)	V637A	probably benign	Het
Yme1l1	A	G	2: 23,194,747 (GRCm38)	D619G	probably damaging	Het
Zfp597	G	A	16: 3,866,638 (GRCm38)	P85S	probably damaging	Het
Zscan20	A	G	4: 128,586,128 (GRCm38)	S857P	probably benign	Het

Other mutations in Xpnpep1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00572:Xpnpep1	APN	19	53,010,148 (GRCm38)	missense	probably benign	0.06
IGL01665:Xpnpep1	APN	19	52,997,032 (GRCm38)	missense	probably benign	0.00
IGL01833:Xpnpep1	APN	19	53,000,393 (GRCm38)	missense	probably damaging	1.00
IGL02011:Xpnpep1	APN	19	53,002,465 (GRCm38)	critical splice donor site	probably benign	0.00
IGL03229:Xpnpep1	APN	19	53,025,380 (GRCm38)	missense	probably benign
IGL03334:Xpnpep1	APN	19	53,010,146 (GRCm38)	missense	probably damaging	1.00
R0226:Xpnpep1	UTSW	19	53,010,152 (GRCm38)	missense	probably benign	0.03
R0613:Xpnpep1	UTSW	19	53,006,353 (GRCm38)	missense	probably damaging	0.97
R0648:Xpnpep1	UTSW	19	52,997,863 (GRCm38)	splice site	probably benign
R1543:Xpnpep1	UTSW	19	52,991,676 (GRCm38)	missense	probably benign	0.24
R1553:Xpnpep1	UTSW	19	53,006,338 (GRCm38)	missense	probably benign	0.00
R1801:Xpnpep1	UTSW	19	53,010,133 (GRCm38)	missense	probably damaging	1.00
R1853:Xpnpep1	UTSW	19	53,006,210 (GRCm38)	missense	probably benign	0.01
R2234:Xpnpep1	UTSW	19	53,013,461 (GRCm38)	missense	probably damaging	1.00
R3797:Xpnpep1	UTSW	19	53,006,342 (GRCm38)	missense	probably benign	0.28
R3820:Xpnpep1	UTSW	19	53,003,819 (GRCm38)	splice site	probably benign
R3822:Xpnpep1	UTSW	19	53,003,819 (GRCm38)	splice site	probably benign
R3925:Xpnpep1	UTSW	19	52,991,697 (GRCm38)	missense	probably damaging	1.00
R4831:Xpnpep1	UTSW	19	53,014,622 (GRCm38)	missense	probably benign	0.09
R5184:Xpnpep1	UTSW	19	53,013,414 (GRCm38)	missense	probably benign	0.24
R5468:Xpnpep1	UTSW	19	52,995,519 (GRCm38)	missense	probably benign	0.01
R5573:Xpnpep1	UTSW	19	53,004,822 (GRCm38)	missense	probably damaging	1.00
R5876:Xpnpep1	UTSW	19	52,997,008 (GRCm38)	missense	probably damaging	1.00
R5929:Xpnpep1	UTSW	19	53,013,489 (GRCm38)	missense	probably damaging	1.00
R6454:Xpnpep1	UTSW	19	52,997,879 (GRCm38)	missense	possibly damaging	0.91
R6519:Xpnpep1	UTSW	19	53,011,844 (GRCm38)	missense	possibly damaging	0.90
R7095:Xpnpep1	UTSW	19	53,011,765 (GRCm38)	critical splice donor site	probably null
R7112:Xpnpep1	UTSW	19	53,010,107 (GRCm38)	missense	probably benign
R7412:Xpnpep1	UTSW	19	53,006,291 (GRCm38)	missense	probably benign
R8329:Xpnpep1	UTSW	19	53,002,472 (GRCm38)	critical splice donor site	probably null
R8431:Xpnpep1	UTSW	19	52,995,506 (GRCm38)	missense	probably benign	0.04
R9194:Xpnpep1	UTSW	19	53,011,858 (GRCm38)	missense	possibly damaging	0.68
R9342:Xpnpep1	UTSW	19	53,004,817 (GRCm38)	missense	probably benign	0.02
R9388:Xpnpep1	UTSW	19	53,004,802 (GRCm38)	missense	probably damaging	1.00
R9546:Xpnpep1	UTSW	19	53,002,528 (GRCm38)	missense	probably damaging	1.00
R9746:Xpnpep1	UTSW	19	53,013,461 (GRCm38)	missense	probably damaging	1.00
RF017:Xpnpep1	UTSW	19	53,032,060 (GRCm38)	missense	probably benign	0.21

Predicted Primers

PCR Primer
(F):5'- TTTACAGAGCCTCATCCGCC -3'
(R):5'- AGTATGCTCTACTCACGTGCC -3'

Sequencing Primer
(F):5'- ATCCGCCCCACTCTAGG -3'
(R):5'- AGGCTCTTCATTGACGGGGAC -3'

Posted On

2016-06-06