Incidental Mutation 'R4999:Cfap57'
ID 389706
Institutional Source Beutler Lab
Gene Symbol Cfap57
Ensembl Gene ENSMUSG00000028730
Gene Name cilia and flagella associated protein 57
Synonyms Wdr65, 1110020C03Rik, C130004B06Rik, LOC384050
MMRRC Submission 042593-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R4999 (G1)
Quality Score 225
Status Not validated
Chromosome 4
Chromosomal Location 118554551-118620777 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to C at 118595848 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Serine to Alanine at position 553 (S553A)
Ref Sequence ENSEMBL: ENSMUSP00000080592 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000071972] [ENSMUST00000081921]
AlphaFold Q9D180
Predicted Effect probably benign
Transcript: ENSMUST00000071972
AA Change: S553A

PolyPhen 2 Score 0.013 (Sensitivity: 0.96; Specificity: 0.78)
SMART Domains Protein: ENSMUSP00000071863
Gene: ENSMUSG00000028730
AA Change: S553A

DomainStartEndE-ValueType
Blast:WD40 44 88 3e-12 BLAST
Blast:WD40 95 137 1e-9 BLAST
WD40 140 181 1.77e2 SMART
internal_repeat_1 182 237 7.23e-5 PROSPERO
WD40 329 365 1.27e2 SMART
WD40 376 416 3.4e-2 SMART
WD40 418 456 1.59e1 SMART
Blast:WD40 461 497 4e-18 BLAST
WD40 500 539 9.67e-7 SMART
WD40 544 581 3.96e1 SMART
Blast:WD40 582 621 8e-16 BLAST
WD40 626 665 3.21e-1 SMART
coiled coil region 690 1056 N/A INTRINSIC
coiled coil region 1094 1166 N/A INTRINSIC
coiled coil region 1197 1222 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000081921
AA Change: S553A

PolyPhen 2 Score 0.013 (Sensitivity: 0.96; Specificity: 0.78)
SMART Domains Protein: ENSMUSP00000080592
Gene: ENSMUSG00000028730
AA Change: S553A

DomainStartEndE-ValueType
Blast:WD40 44 88 3e-12 BLAST
Blast:WD40 95 137 1e-9 BLAST
WD40 140 181 1.77e2 SMART
internal_repeat_1 182 237 7.23e-5 PROSPERO
WD40 329 365 1.27e2 SMART
WD40 376 416 3.4e-2 SMART
WD40 418 456 1.59e1 SMART
Blast:WD40 461 497 4e-18 BLAST
WD40 500 539 9.67e-7 SMART
WD40 544 581 3.96e1 SMART
Blast:WD40 582 621 8e-16 BLAST
WD40 626 665 3.21e-1 SMART
coiled coil region 690 1056 N/A INTRINSIC
coiled coil region 1094 1166 N/A INTRINSIC
coiled coil region 1197 1222 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.3%
  • 10x: 96.4%
  • 20x: 92.7%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This protein encoded by this gene belongs to the WD repeat-containing family of proteins, which function in the formation of protein-protein complexes in a variety of biological pathways. This family member is thought to function in craniofacial development, possibly in the fusion of lip and palate. A missense mutation in this gene is associated with Van der Woude syndrome 2. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Aug 2011]
Allele List at MGI
Other mutations in this stock
Total: 83 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930444P10Rik A G 1: 16,068,798 (GRCm38) probably null Het
Abca4 T A 3: 122,105,370 (GRCm38) V667D probably damaging Het
Aco1 A G 4: 40,176,507 (GRCm38) I224V probably damaging Het
Arel1 C T 12: 84,931,767 (GRCm38) V364M probably damaging Het
Arhgap42 A G 9: 9,009,434 (GRCm38) V484A probably damaging Het
Asap2 T C 12: 21,252,765 (GRCm38) F681L probably benign Het
Atrn C A 2: 130,975,954 (GRCm38) D809E probably damaging Het
BC037034 T A 5: 138,261,622 (GRCm38) T391S probably damaging Het
Ccdc70 G A 8: 21,973,250 (GRCm38) V19M possibly damaging Het
Ccp110 G T 7: 118,730,012 (GRCm38) E73* probably null Het
Cftr A G 6: 18,221,614 (GRCm38) K212E probably benign Het
Chkb A T 15: 89,428,165 (GRCm38) Y216N probably damaging Het
Cntnap2 G T 6: 45,920,834 (GRCm38) D149Y probably damaging Het
Cpd A G 11: 76,846,222 (GRCm38) probably null Het
Creb3l1 C T 2: 91,983,226 (GRCm38) D489N probably benign Het
Crhbp A G 13: 95,442,245 (GRCm38) F123L probably damaging Het
Cryab T C 9: 50,754,609 (GRCm38) V100A possibly damaging Het
Csmd2 T C 4: 128,521,930 (GRCm38) I2684T probably benign Het
Ctbp2 G T 7: 133,014,649 (GRCm38) P186T possibly damaging Het
Ctnna2 T C 6: 76,915,762 (GRCm38) N814S possibly damaging Het
Dntt T C 19: 41,039,856 (GRCm38) V197A probably damaging Het
Fam135a G A 1: 24,020,677 (GRCm38) A1187V possibly damaging Het
Filip1l A T 16: 57,570,415 (GRCm38) Q455H probably benign Het
Grm2 T C 9: 106,653,990 (GRCm38) E100G probably damaging Het
Gtf2ird2 G A 5: 134,217,464 (GRCm38) V855M probably damaging Het
Heatr9 A T 11: 83,518,792 (GRCm38) I118N possibly damaging Het
Htra3 T C 5: 35,671,125 (GRCm38) H137R probably benign Het
Iars A G 13: 49,709,661 (GRCm38) S530G probably damaging Het
Klhdc4 T A 8: 121,796,603 (GRCm38) M510L probably benign Het
Lipc T C 9: 70,816,731 (GRCm38) T204A probably benign Het
Lrp1 A G 10: 127,553,779 (GRCm38) V3129A probably damaging Het
Macf1 G A 4: 123,494,909 (GRCm38) T1120I probably benign Het
Map4 T C 9: 110,038,377 (GRCm38) probably benign Het
Mbtps1 A T 8: 119,533,348 (GRCm38) V420D probably damaging Het
Mta2 G T 19: 8,950,383 (GRCm38) D523Y probably benign Het
Muc4 A G 16: 32,756,296 (GRCm38) probably benign Het
Mug1 C T 6: 121,878,943 (GRCm38) Q965* probably null Het
Myo1e T A 9: 70,353,312 (GRCm38) I584N probably damaging Het
Nolc1 T C 19: 46,078,920 (GRCm38) V80A probably damaging Het
Nop56 G T 2: 130,275,725 (GRCm38) V91L probably benign Het
Olfr1451 A T 19: 12,999,219 (GRCm38) M78L probably benign Het
Olfr191 A T 16: 59,086,402 (GRCm38) L27Q probably damaging Het
Olfr523 T C 7: 140,177,020 (GRCm38) V300A probably damaging Het
Osbpl3 T C 6: 50,336,297 (GRCm38) E107G probably damaging Het
Pde3a T A 6: 141,250,025 (GRCm38) C146S probably benign Het
Pfkm A G 15: 98,128,242 (GRCm38) M573V probably damaging Het
Pkd1l2 C T 8: 117,047,374 (GRCm38) probably null Het
Plekhg3 T C 12: 76,565,247 (GRCm38) I374T possibly damaging Het
Ppig T A 2: 69,741,486 (GRCm38) V183D unknown Het
Prom1 T G 5: 44,037,534 (GRCm38) I290L probably benign Het
Rufy3 T A 5: 88,637,226 (GRCm38) M387K probably damaging Het
Selenoo G A 15: 89,094,184 (GRCm38) R270H probably damaging Het
Sema3d T A 5: 12,508,087 (GRCm38) probably null Het
Sema6c C T 3: 95,168,363 (GRCm38) T175I probably damaging Het
Serpina3k T C 12: 104,341,046 (GRCm38) I179T probably damaging Het
Sf3b3 T C 8: 110,841,203 (GRCm38) T207A probably benign Het
Slc22a26 C A 19: 7,802,181 (GRCm38) R90L probably damaging Het
Slitrk5 T C 14: 111,680,216 (GRCm38) V424A probably damaging Het
Smarca2 G T 19: 26,720,855 (GRCm38) E89* probably null Het
Soga1 C T 2: 157,022,856 (GRCm38) G1144D probably benign Het
Stab2 T A 10: 86,937,909 (GRCm38) S853C probably damaging Het
Stk17b A T 1: 53,761,147 (GRCm38) probably null Het
Taar5 T A 10: 23,971,547 (GRCm38) I281N possibly damaging Het
Tarsl2 A T 7: 65,658,935 (GRCm38) E284D probably damaging Het
Tbx15 C A 3: 99,316,333 (GRCm38) T279K probably damaging Het
Tfr2 G A 5: 137,586,925 (GRCm38) V740I probably benign Het
Tlr12 T C 4: 128,617,680 (GRCm38) E259G probably benign Het
Tmem145 A G 7: 25,309,034 (GRCm38) T302A probably benign Het
Tmem57 A G 4: 134,828,133 (GRCm38) I343T probably benign Het
Trpa1 G T 1: 14,875,861 (GRCm38) H1015Q probably benign Het
Tspan8 A G 10: 115,817,629 (GRCm38) Y10C possibly damaging Het
Ttll7 A G 3: 146,894,469 (GRCm38) N44S probably damaging Het
Uba7 T C 9: 107,979,839 (GRCm38) probably null Het
Ube2j2 G A 4: 155,946,384 (GRCm38) M1I probably null Het
Ubr5 C A 15: 38,009,668 (GRCm38) A1022S probably benign Het
Usf1 T G 1: 171,415,763 (GRCm38) I36S probably damaging Het
Vmn1r181 A T 7: 23,984,365 (GRCm38) D85V probably damaging Het
Vmn1r3 A T 4: 3,185,009 (GRCm38) Y99* probably null Het
Vmn1r72 T C 7: 11,670,373 (GRCm38) I49M possibly damaging Het
Vmn2r99 A G 17: 19,362,135 (GRCm38) M1V probably null Het
Vsig10 T A 5: 117,343,975 (GRCm38) V410E probably damaging Het
Zc3h7b A G 15: 81,779,133 (GRCm38) Y442C probably damaging Het
Zfyve26 G T 12: 79,280,385 (GRCm38) Y730* probably null Het
Other mutations in Cfap57
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00502:Cfap57 APN 4 118,581,001 (GRCm38) missense probably benign 0.01
IGL00508:Cfap57 APN 4 118,581,170 (GRCm38) splice site probably null
IGL00857:Cfap57 APN 4 118,612,923 (GRCm38) critical splice donor site probably null
IGL01147:Cfap57 APN 4 118,589,001 (GRCm38) missense probably damaging 0.97
IGL01396:Cfap57 APN 4 118,610,595 (GRCm38) missense probably damaging 1.00
IGL01420:Cfap57 APN 4 118,612,940 (GRCm38) missense probably benign 0.21
IGL01615:Cfap57 APN 4 118,600,796 (GRCm38) missense probably damaging 1.00
IGL02154:Cfap57 APN 4 118,613,017 (GRCm38) missense probably damaging 1.00
IGL02161:Cfap57 APN 4 118,579,372 (GRCm38) missense possibly damaging 0.75
IGL02481:Cfap57 APN 4 118,581,105 (GRCm38) missense probably damaging 1.00
IGL02483:Cfap57 APN 4 118,581,105 (GRCm38) missense probably damaging 1.00
IGL02503:Cfap57 APN 4 118,569,348 (GRCm38) critical splice donor site probably null
IGL02800:Cfap57 APN 4 118,614,750 (GRCm38) missense probably damaging 1.00
IGL03083:Cfap57 APN 4 118,584,739 (GRCm38) missense probably damaging 0.96
IGL03146:Cfap57 APN 4 118,599,019 (GRCm38) missense probably damaging 1.00
IGL03246:Cfap57 APN 4 118,576,645 (GRCm38) missense probably benign 0.29
IGL03376:Cfap57 APN 4 118,584,720 (GRCm38) missense probably damaging 0.96
G1Funyon:Cfap57 UTSW 4 118,593,074 (GRCm38) missense possibly damaging 0.94
R0144:Cfap57 UTSW 4 118,584,705 (GRCm38) missense probably damaging 1.00
R0184:Cfap57 UTSW 4 118,599,012 (GRCm38) missense probably damaging 1.00
R0415:Cfap57 UTSW 4 118,569,431 (GRCm38) missense possibly damaging 0.89
R0515:Cfap57 UTSW 4 118,620,402 (GRCm38) missense probably damaging 1.00
R0690:Cfap57 UTSW 4 118,569,727 (GRCm38) splice site probably benign
R0730:Cfap57 UTSW 4 118,612,920 (GRCm38) splice site probably null
R0737:Cfap57 UTSW 4 118,581,102 (GRCm38) missense possibly damaging 0.81
R0854:Cfap57 UTSW 4 118,561,872 (GRCm38) missense probably benign 0.04
R0880:Cfap57 UTSW 4 118,581,838 (GRCm38) nonsense probably null
R1085:Cfap57 UTSW 4 118,595,779 (GRCm38) missense probably benign 0.20
R1119:Cfap57 UTSW 4 118,606,676 (GRCm38) nonsense probably null
R1217:Cfap57 UTSW 4 118,606,652 (GRCm38) missense possibly damaging 0.67
R1294:Cfap57 UTSW 4 118,606,534 (GRCm38) critical splice donor site probably null
R1487:Cfap57 UTSW 4 118,614,781 (GRCm38) missense probably benign 0.01
R1676:Cfap57 UTSW 4 118,595,940 (GRCm38) missense probably damaging 1.00
R1688:Cfap57 UTSW 4 118,569,646 (GRCm38) missense probably null 0.20
R1709:Cfap57 UTSW 4 118,571,704 (GRCm38) missense probably benign 0.00
R1719:Cfap57 UTSW 4 118,606,631 (GRCm38) missense probably benign 0.04
R1782:Cfap57 UTSW 4 118,614,975 (GRCm38) missense probably damaging 0.98
R1791:Cfap57 UTSW 4 118,571,724 (GRCm38) missense possibly damaging 0.66
R1850:Cfap57 UTSW 4 118,599,894 (GRCm38) missense probably damaging 1.00
R1866:Cfap57 UTSW 4 118,599,927 (GRCm38) missense possibly damaging 0.49
R1912:Cfap57 UTSW 4 118,615,010 (GRCm38) missense probably damaging 0.96
R1978:Cfap57 UTSW 4 118,593,132 (GRCm38) missense probably benign 0.03
R2177:Cfap57 UTSW 4 118,606,688 (GRCm38) missense probably benign 0.00
R2322:Cfap57 UTSW 4 118,610,725 (GRCm38) missense probably benign
R3905:Cfap57 UTSW 4 118,595,839 (GRCm38) missense probably damaging 1.00
R4013:Cfap57 UTSW 4 118,593,143 (GRCm38) missense probably benign 0.01
R4079:Cfap57 UTSW 4 118,598,997 (GRCm38) missense probably benign 0.34
R4962:Cfap57 UTSW 4 118,613,065 (GRCm38) missense probably benign 0.21
R4970:Cfap57 UTSW 4 118,620,371 (GRCm38) missense probably damaging 0.99
R4974:Cfap57 UTSW 4 118,593,054 (GRCm38) missense probably damaging 1.00
R5482:Cfap57 UTSW 4 118,569,641 (GRCm38) missense probably benign
R5522:Cfap57 UTSW 4 118,595,888 (GRCm38) missense probably benign 0.41
R5626:Cfap57 UTSW 4 118,614,783 (GRCm38) missense probably damaging 1.00
R5685:Cfap57 UTSW 4 118,569,459 (GRCm38) missense probably benign
R5712:Cfap57 UTSW 4 118,614,795 (GRCm38) missense probably damaging 1.00
R5961:Cfap57 UTSW 4 118,571,745 (GRCm38) missense probably benign 0.00
R6244:Cfap57 UTSW 4 118,579,410 (GRCm38) missense probably damaging 0.99
R6268:Cfap57 UTSW 4 118,569,451 (GRCm38) nonsense probably null
R6271:Cfap57 UTSW 4 118,595,759 (GRCm38) missense probably benign 0.13
R6330:Cfap57 UTSW 4 118,569,396 (GRCm38) missense probably benign
R6439:Cfap57 UTSW 4 118,588,975 (GRCm38) critical splice donor site probably null
R6639:Cfap57 UTSW 4 118,554,712 (GRCm38) missense probably benign 0.13
R6722:Cfap57 UTSW 4 118,584,717 (GRCm38) missense probably damaging 1.00
R7033:Cfap57 UTSW 4 118,613,126 (GRCm38) missense possibly damaging 0.67
R7143:Cfap57 UTSW 4 118,620,709 (GRCm38) unclassified probably benign
R7162:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R7174:Cfap57 UTSW 4 118,589,067 (GRCm38) missense probably benign 0.35
R7210:Cfap57 UTSW 4 118,576,703 (GRCm38) nonsense probably null
R7242:Cfap57 UTSW 4 118,593,096 (GRCm38) missense possibly damaging 0.50
R7244:Cfap57 UTSW 4 118,554,800 (GRCm38) nonsense probably null
R7359:Cfap57 UTSW 4 118,598,965 (GRCm38) missense probably benign 0.01
R7373:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R7394:Cfap57 UTSW 4 118,593,137 (GRCm38) missense probably benign 0.00
R7401:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R7412:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R7414:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R7452:Cfap57 UTSW 4 118,595,784 (GRCm38) missense probably damaging 1.00
R7457:Cfap57 UTSW 4 118,589,001 (GRCm38) missense probably damaging 0.97
R7559:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R7642:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R7741:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R7744:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R7745:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R7842:Cfap57 UTSW 4 118,554,755 (GRCm38) nonsense probably null
R7936:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R7940:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R7942:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R8074:Cfap57 UTSW 4 118,569,625 (GRCm38) missense possibly damaging 0.66
R8301:Cfap57 UTSW 4 118,593,074 (GRCm38) missense possibly damaging 0.94
R8411:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R8447:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R8491:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R8524:Cfap57 UTSW 4 118,614,931 (GRCm38) missense probably benign
R8670:Cfap57 UTSW 4 118,614,925 (GRCm38) missense possibly damaging 0.91
R8707:Cfap57 UTSW 4 118,593,006 (GRCm38) missense probably benign 0.04
R8790:Cfap57 UTSW 4 118,581,914 (GRCm38) missense possibly damaging 0.59
R8941:Cfap57 UTSW 4 118,569,602 (GRCm38) missense probably damaging 0.99
R9139:Cfap57 UTSW 4 118,554,851 (GRCm38) missense probably benign 0.02
R9212:Cfap57 UTSW 4 118,579,452 (GRCm38) missense possibly damaging 0.95
R9442:Cfap57 UTSW 4 118,606,534 (GRCm38) critical splice donor site probably null
R9525:Cfap57 UTSW 4 118,576,581 (GRCm38) missense probably damaging 1.00
X0022:Cfap57 UTSW 4 118,614,745 (GRCm38) missense probably benign
Z1088:Cfap57 UTSW 4 118,581,882 (GRCm38) missense probably benign 0.22
Z1177:Cfap57 UTSW 4 118,598,956 (GRCm38) critical splice donor site probably null
Predicted Primers PCR Primer
(F):5'- CGCATGCTTCCCTTCAGAAG -3'
(R):5'- TATTAGAGCCCCTGAGTTTGTCTCC -3'

Sequencing Primer
(F):5'- TTCCCTTCAGAAGCCCAGGAG -3'
(R):5'- CTCCCCAAGTTGGTGTGC -3'
Posted On 2016-06-06