Incidental Mutation 'R0437:Atp4a'
ID 39073
Institutional Source Beutler Lab
Gene Symbol Atp4a
Ensembl Gene ENSMUSG00000005553
Gene Name ATPase, H+/K+ exchanging, gastric, alpha polypeptide
Synonyms H+K+-transporting alpha 1, H+/K+-ATPase alpha
MMRRC Submission 038638-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.085) question?
Stock # R0437 (G1)
Quality Score 225
Status Validated
Chromosome 7
Chromosomal Location 30411634-30424959 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to G at 30419526 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Arginine to Glycine at position 659 (R659G)
Ref Sequence ENSEMBL: ENSMUSP00000131964 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000005692] [ENSMUST00000170371] [ENSMUST00000171014]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000005692
AA Change: R659G

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
SMART Domains Protein: ENSMUSP00000005692
Gene: ENSMUSG00000005553
AA Change: R659G

DomainStartEndE-ValueType
Pfam:H-K_ATPase_N 2 42 5.4e-23 PFAM
Cation_ATPase_N 52 126 2.26e-18 SMART
Pfam:E1-E2_ATPase 144 375 1.1e-57 PFAM
Pfam:Hydrolase 380 739 5.3e-16 PFAM
Pfam:HAD 383 736 1.9e-18 PFAM
Pfam:Cation_ATPase 436 531 1.6e-24 PFAM
Pfam:Cation_ATPase_C 809 1019 4.8e-43 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000165410
Predicted Effect noncoding transcript
Transcript: ENSMUST00000167761
Predicted Effect probably benign
Transcript: ENSMUST00000170371
AA Change: R659G

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
SMART Domains Protein: ENSMUSP00000131964
Gene: ENSMUSG00000005553
AA Change: R659G

DomainStartEndE-ValueType
Pfam:H-K_ATPase_N 2 42 4.9e-28 PFAM
Cation_ATPase_N 52 126 2.26e-18 SMART
Pfam:E1-E2_ATPase 145 376 1e-62 PFAM
Pfam:Hydrolase 380 730 9.3e-25 PFAM
Pfam:HAD 383 727 2.1e-15 PFAM
Pfam:Hydrolase_like2 436 531 4e-25 PFAM
Pfam:Cation_ATPase_C 800 1010 1.5e-42 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000171014
Meta Mutation Damage Score 0.0961 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.6%
  • 10x: 97.0%
  • 20x: 94.8%
Validation Efficiency 100% (104/104)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to a family of P-type cation-transporting ATPases. The gastric H+, K+-ATPase is a heterodimer consisting of a high molecular weight catalytic alpha subunit and a smaller but heavily glycosylated beta subunit. This enzyme is a proton pump that catalyzes the hydrolysis of ATP coupled with the exchange of H(+) and K(+) ions across the plasma membrane. It is also responsible for gastric acid secretion. This gene encodes a catalytic alpha subunit of the gastric H+, K+-ATPase. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous mutation of this gene results in achlorhydria, hypergastrinemia, and abnormalities of the parietal cells. Mice homozygous for an ENU-induced allele exhibit iron-deficiency anemia. [provided by MGI curators]
Allele List at MGI

All alleles(3) : Targeted, knock-out(1) Targeted, other(2)

Other mutations in this stock
Total: 99 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4833420G17Rik G A 13: 119,606,631 (GRCm39) R291K probably benign Het
Abca2 T C 2: 25,332,857 (GRCm39) S1519P probably damaging Het
Abcb11 G A 2: 69,087,639 (GRCm39) A1042V probably damaging Het
Abcc10 A T 17: 46,623,845 (GRCm39) probably null Het
Abcc10 G T 17: 46,623,846 (GRCm39) probably benign Het
Alkbh3 A C 2: 93,811,914 (GRCm39) L240V probably damaging Het
Apol10b T C 15: 77,469,608 (GRCm39) S190G probably benign Het
Atp1a3 C A 7: 24,698,392 (GRCm39) C135F probably benign Het
Bicra A G 7: 15,722,687 (GRCm39) S277P possibly damaging Het
Bltp1 A T 3: 37,043,953 (GRCm39) H2820L possibly damaging Het
Bmp8a T C 4: 123,210,690 (GRCm39) E275G probably benign Het
Ccdc102a T C 8: 95,640,054 (GRCm39) E80G probably damaging Het
Cdh23 T C 10: 60,246,576 (GRCm39) D954G probably damaging Het
Chrm4 A G 2: 91,758,788 (GRCm39) T399A possibly damaging Het
Clcn3 A G 8: 61,387,571 (GRCm39) V199A possibly damaging Het
Crlf1 T C 8: 70,952,164 (GRCm39) probably null Het
Crx G T 7: 15,605,071 (GRCm39) S57* probably null Het
Cstpp1 A G 2: 91,252,298 (GRCm39) L21P probably damaging Het
Cyp4f16 A G 17: 32,756,072 (GRCm39) I34V possibly damaging Het
Daxx T C 17: 34,132,598 (GRCm39) V576A probably benign Het
Ddx17 C T 15: 79,421,672 (GRCm39) R351H probably damaging Het
Dhx38 T C 8: 110,285,261 (GRCm39) probably benign Het
Dnd1 T C 18: 36,897,552 (GRCm39) probably benign Het
Dync1i2 A T 2: 71,058,169 (GRCm39) probably null Het
E2f6 T C 12: 16,866,446 (GRCm39) S52P probably benign Het
Epb41l4a A G 18: 34,013,326 (GRCm39) F116S probably damaging Het
Ext1 T C 15: 52,969,502 (GRCm39) N362S probably damaging Het
Fam227a C A 15: 79,528,189 (GRCm39) K79N possibly damaging Het
Fam228a T A 12: 4,782,759 (GRCm39) L111F probably damaging Het
Fat2 T C 11: 55,173,625 (GRCm39) T2363A probably benign Het
Fat3 A T 9: 15,908,228 (GRCm39) N2591K probably damaging Het
Frem2 A G 3: 53,560,436 (GRCm39) M1357T possibly damaging Het
Frmd4b A T 6: 97,400,424 (GRCm39) V29D probably damaging Het
G930045G22Rik A G 6: 50,823,918 (GRCm39) noncoding transcript Het
Galnt3 A G 2: 65,937,573 (GRCm39) S46P possibly damaging Het
Gmeb2 A G 2: 180,895,766 (GRCm39) V468A possibly damaging Het
Herc2 C T 7: 55,869,563 (GRCm39) R4271* probably null Het
Il5 C A 11: 53,614,733 (GRCm39) probably benign Het
Ints9 G A 14: 65,223,818 (GRCm39) probably benign Het
Itga10 T C 3: 96,556,453 (GRCm39) F196S probably damaging Het
Itgb3bp T C 4: 99,670,126 (GRCm39) T138A probably damaging Het
Kcnd1 G A X: 7,690,922 (GRCm39) V281M probably benign Het
Lcp2 T C 11: 34,037,229 (GRCm39) L391P probably benign Het
Lrrc66 T C 5: 73,765,030 (GRCm39) Y671C probably benign Het
Mettl23 T C 11: 116,740,120 (GRCm39) V197A possibly damaging Het
Mmp15 C A 8: 96,097,400 (GRCm39) D456E probably benign Het
Mospd4 T C 18: 46,598,848 (GRCm39) noncoding transcript Het
Mov10l1 C A 15: 88,889,515 (GRCm39) H484N probably damaging Het
Mphosph9 T C 5: 124,453,631 (GRCm39) Q197R probably benign Het
Ms4a1 T A 19: 11,233,933 (GRCm39) probably null Het
Mybbp1a T C 11: 72,339,674 (GRCm39) V919A possibly damaging Het
Mycbpap A T 11: 94,404,338 (GRCm39) probably benign Het
Naip6 G A 13: 100,433,432 (GRCm39) S1135F possibly damaging Het
Ndufc2 T A 7: 97,049,544 (GRCm39) M50K probably benign Het
Npr2 T C 4: 43,648,082 (GRCm39) V842A probably damaging Het
Ntsr2 G T 12: 16,703,696 (GRCm39) G66W probably damaging Het
Obscn T C 11: 58,885,914 (GRCm39) probably benign Het
Optn C T 2: 5,028,926 (GRCm39) G526R probably damaging Het
Or4c11 T A 2: 88,695,229 (GRCm39) N93K probably benign Het
Or4c114 T A 2: 88,904,956 (GRCm39) I160F probably benign Het
Or6c33 T C 10: 129,853,965 (GRCm39) V245A probably damaging Het
Or6k14 G A 1: 173,927,965 (GRCm39) G314R probably benign Het
Otud4 T A 8: 80,396,626 (GRCm39) H628Q probably benign Het
Padi6 T C 4: 140,456,240 (GRCm39) T585A probably benign Het
Pex16 G T 2: 92,205,937 (GRCm39) R10L probably damaging Het
Pitpnm2 A G 5: 124,269,152 (GRCm39) probably benign Het
Pom121l2 A G 13: 22,167,375 (GRCm39) T549A possibly damaging Het
Prdm15 A T 16: 97,613,759 (GRCm39) M470K probably benign Het
Prkag2 T A 5: 25,233,503 (GRCm39) D49V possibly damaging Het
Prl3c1 A G 13: 27,383,447 (GRCm39) M38V probably benign Het
Prpf18 T A 2: 4,648,572 (GRCm39) I85F possibly damaging Het
Psg27 A G 7: 18,294,636 (GRCm39) probably benign Het
Relt A G 7: 100,497,991 (GRCm39) probably benign Het
Rskr T C 11: 78,182,362 (GRCm39) L57P probably benign Het
Serpina3b A T 12: 104,096,929 (GRCm39) N70I probably damaging Het
Slc19a3 T C 1: 83,000,286 (GRCm39) S244G probably benign Het
Slc39a5 T C 10: 128,235,716 (GRCm39) T81A possibly damaging Het
Slc7a2 G A 8: 41,357,563 (GRCm39) G277D probably damaging Het
Slc9c1 C T 16: 45,420,250 (GRCm39) probably benign Het
Slx1b A G 7: 126,291,753 (GRCm39) F104L probably benign Het
Smg6 G A 11: 74,820,527 (GRCm39) S266N probably damaging Het
Spata9 T C 13: 76,146,614 (GRCm39) V162A possibly damaging Het
Szrd1 T C 4: 140,846,055 (GRCm39) I47V probably benign Het
Tha1 G T 11: 117,759,401 (GRCm39) L363M probably benign Het
Tmc6 G A 11: 117,669,087 (GRCm39) T89I possibly damaging Het
Tmem132d C T 5: 127,866,849 (GRCm39) G684R probably damaging Het
Trim55 G A 3: 19,725,142 (GRCm39) G220S probably benign Het
Ttn A G 2: 76,600,874 (GRCm39) L18836P probably damaging Het
Ubn1 G T 16: 4,890,048 (GRCm39) probably benign Het
Ush2a T G 1: 188,643,228 (GRCm39) W4197G probably benign Het
Vmn1r189 A T 13: 22,286,231 (GRCm39) V202E probably damaging Het
Vmn1r209 T C 13: 22,990,526 (GRCm39) I55V probably benign Het
Vmn2r86 A T 10: 130,282,412 (GRCm39) C735S probably damaging Het
Vwf A T 6: 125,543,281 (GRCm39) D174V probably damaging Het
Zfp438 T C 18: 5,214,910 (GRCm39) N16S probably damaging Het
Zfp444 C T 7: 6,192,408 (GRCm39) T142I probably benign Het
Zfp804a A G 2: 81,884,135 (GRCm39) M1V probably null Het
Zfp936 T G 7: 42,838,734 (GRCm39) I67S probably benign Het
Zfp948 A T 17: 21,807,260 (GRCm39) N151Y unknown Het
Other mutations in Atp4a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00339:Atp4a APN 7 30,412,629 (GRCm39) missense possibly damaging 0.95
IGL01327:Atp4a APN 7 30,412,675 (GRCm39) missense possibly damaging 0.96
IGL01510:Atp4a APN 7 30,420,216 (GRCm39) missense probably benign 0.02
IGL01763:Atp4a APN 7 30,414,943 (GRCm39) missense probably benign 0.20
IGL02061:Atp4a APN 7 30,414,454 (GRCm39) missense probably damaging 1.00
IGL02435:Atp4a APN 7 30,416,482 (GRCm39) missense probably benign
IGL02903:Atp4a APN 7 30,415,344 (GRCm39) missense probably benign 0.00
IGL03181:Atp4a APN 7 30,424,129 (GRCm39) missense probably benign 0.02
IGL03350:Atp4a APN 7 30,420,292 (GRCm39) missense probably damaging 1.00
atypical UTSW 7 30,414,781 (GRCm39) missense possibly damaging 0.84
sublytic UTSW 7 30,415,225 (GRCm39) missense probably benign 0.32
IGL03097:Atp4a UTSW 7 30,422,462 (GRCm39) missense probably benign 0.14
R0095:Atp4a UTSW 7 30,420,160 (GRCm39) missense probably damaging 0.99
R0121:Atp4a UTSW 7 30,419,526 (GRCm39) missense probably benign 0.00
R0140:Atp4a UTSW 7 30,419,526 (GRCm39) missense probably benign 0.00
R0241:Atp4a UTSW 7 30,416,560 (GRCm39) missense probably benign 0.00
R0624:Atp4a UTSW 7 30,418,424 (GRCm39) missense probably benign
R1164:Atp4a UTSW 7 30,417,117 (GRCm39) missense probably benign 0.00
R2105:Atp4a UTSW 7 30,419,793 (GRCm39) critical splice donor site probably null
R2272:Atp4a UTSW 7 30,414,925 (GRCm39) nonsense probably null
R2327:Atp4a UTSW 7 30,419,666 (GRCm39) missense probably benign 0.16
R2881:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R2990:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R2992:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R2993:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R3123:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R3125:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R3441:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R3442:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R3686:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R3687:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R3845:Atp4a UTSW 7 30,416,540 (GRCm39) missense probably null 0.99
R4027:Atp4a UTSW 7 30,424,377 (GRCm39) splice site probably null
R4072:Atp4a UTSW 7 30,414,757 (GRCm39) missense probably benign 0.09
R4433:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R4454:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R4457:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R4458:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R4510:Atp4a UTSW 7 30,423,678 (GRCm39) nonsense probably null
R4511:Atp4a UTSW 7 30,423,678 (GRCm39) nonsense probably null
R4576:Atp4a UTSW 7 30,417,147 (GRCm39) missense probably benign 0.25
R4656:Atp4a UTSW 7 30,419,373 (GRCm39) intron probably benign
R4661:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R4662:Atp4a UTSW 7 30,419,650 (GRCm39) missense probably benign 0.16
R4852:Atp4a UTSW 7 30,423,693 (GRCm39) missense probably benign 0.10
R4892:Atp4a UTSW 7 30,411,899 (GRCm39) missense probably benign 0.07
R4907:Atp4a UTSW 7 30,418,517 (GRCm39) missense possibly damaging 0.66
R5024:Atp4a UTSW 7 30,415,289 (GRCm39) missense possibly damaging 0.82
R5254:Atp4a UTSW 7 30,414,955 (GRCm39) missense probably damaging 1.00
R5318:Atp4a UTSW 7 30,414,754 (GRCm39) missense probably damaging 1.00
R5340:Atp4a UTSW 7 30,420,231 (GRCm39) missense probably benign
R5484:Atp4a UTSW 7 30,420,097 (GRCm39) unclassified probably benign
R5729:Atp4a UTSW 7 30,411,851 (GRCm39) missense possibly damaging 0.48
R5762:Atp4a UTSW 7 30,418,521 (GRCm39) missense probably damaging 0.99
R5797:Atp4a UTSW 7 30,412,074 (GRCm39) missense probably damaging 1.00
R6030:Atp4a UTSW 7 30,421,941 (GRCm39) missense probably damaging 0.99
R6030:Atp4a UTSW 7 30,421,941 (GRCm39) missense probably damaging 0.99
R6077:Atp4a UTSW 7 30,415,344 (GRCm39) missense probably benign 0.00
R6243:Atp4a UTSW 7 30,415,382 (GRCm39) missense possibly damaging 0.68
R6346:Atp4a UTSW 7 30,414,781 (GRCm39) missense possibly damaging 0.84
R6459:Atp4a UTSW 7 30,411,887 (GRCm39) missense probably benign 0.00
R6515:Atp4a UTSW 7 30,411,903 (GRCm39) missense possibly damaging 0.78
R6773:Atp4a UTSW 7 30,414,802 (GRCm39) missense probably damaging 0.98
R6854:Atp4a UTSW 7 30,414,433 (GRCm39) missense probably benign 0.29
R7215:Atp4a UTSW 7 30,416,785 (GRCm39) missense possibly damaging 0.61
R7271:Atp4a UTSW 7 30,421,944 (GRCm39) missense probably benign 0.16
R7340:Atp4a UTSW 7 30,416,155 (GRCm39) missense possibly damaging 0.94
R7457:Atp4a UTSW 7 30,420,192 (GRCm39) missense probably benign 0.08
R7593:Atp4a UTSW 7 30,424,105 (GRCm39) missense probably benign 0.08
R7712:Atp4a UTSW 7 30,414,978 (GRCm39) missense probably damaging 0.96
R7762:Atp4a UTSW 7 30,419,461 (GRCm39) missense probably damaging 0.96
R8714:Atp4a UTSW 7 30,420,013 (GRCm39) missense probably damaging 0.99
R9324:Atp4a UTSW 7 30,415,207 (GRCm39) missense probably benign 0.02
Z1177:Atp4a UTSW 7 30,417,265 (GRCm39) missense possibly damaging 0.47
Z1186:Atp4a UTSW 7 30,416,782 (GRCm39) missense probably benign
Predicted Primers PCR Primer
(F):5'- GGGGACATTGCTCTGATCTGAAGG -3'
(R):5'- CAATCACCAGCTTCTGCTGAGGAC -3'

Sequencing Primer
(F):5'- CTCTGATCTGAAGGGGTGAAG -3'
(R):5'- TCAGTCAGTGTGGGTTGCA -3'
Posted On 2013-05-23