Mutagenetix > Incidental Mutation

Incidental Mutation 'R5056:Trnau1ap'

390832

Institutional Source

Beutler Lab

Gene Symbol

Trnau1ap

Ensembl Gene

ENSMUSG00000028898

Gene Name

tRNA selenocysteine 1 associated protein 1

Synonyms

1110007F05Rik, SECp43, Trspap1

MMRRC Submission

042646-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.968) question?

Stock #

R5056 (G1)

Quality Score

127

Status

Validated

Chromosome

Chromosomal Location

132039074-132056849 bp(-) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

T to C at 132054482 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000127273 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030726] [ENSMUST00000030730] [ENSMUST00000084250] [ENSMUST00000105951] [ENSMUST00000105960] [ENSMUST00000105962] [ENSMUST00000125513] [ENSMUST00000147652] [ENSMUST00000127402] [ENSMUST00000137520]

AlphaFold

Q80VC6

Predicted Effect

probably benign
Transcript: ENSMUST00000030726

SMART Domains

Protein: ENSMUSP00000030726
Gene: ENSMUSG00000028896

Domain	Start	End	E-Value	Type
Pfam:RCC1	47	95	7.9e-12	PFAM
Pfam:RCC1	98	147	7.5e-17	PFAM
Pfam:RCC1_2	134	165	1.3e-11	PFAM
Pfam:RCC1	150	200	9.9e-10	PFAM
Pfam:RCC1_2	187	216	3.2e-7	PFAM
Pfam:RCC1	203	268	4.2e-14	PFAM
Pfam:RCC1	271	322	1.1e-11	PFAM
Pfam:RCC1	325	373	3.4e-10	PFAM
Pfam:RCC1	376	427	3.4e-14	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000030730

SMART Domains

Protein: ENSMUSP00000030730
Gene: ENSMUSG00000028898

Domain	Start	End	E-Value	Type
RRM	4	78	3.66e-8	SMART
RRM	97	171	2.2e-11	SMART
low complexity region	185	204	N/A	INTRINSIC
low complexity region	213	229	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000084250

SMART Domains

Protein: ENSMUSP00000081271
Gene: ENSMUSG00000028896

Domain	Start	End	E-Value	Type
low complexity region	19	26	N/A	INTRINSIC
Pfam:RCC1	34	82	4.1e-10	PFAM
Pfam:RCC1	85	134	1.4e-13	PFAM
Pfam:RCC1_2	121	151	1.5e-8	PFAM
Pfam:RCC1	137	187	1.7e-7	PFAM
Pfam:RCC1_2	174	203	3e-5	PFAM
Pfam:RCC1	190	255	9.6e-11	PFAM
Pfam:RCC1	258	309	1.9e-9	PFAM
Pfam:RCC1	312	360	5.7e-9	PFAM
Pfam:RCC1	363	414	3.9e-12	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000105951

SMART Domains

Protein: ENSMUSP00000101571
Gene: ENSMUSG00000028896

Domain	Start	End	E-Value	Type
low complexity region	19	26	N/A	INTRINSIC
Pfam:RCC1	34	82	4.1e-10	PFAM
Pfam:RCC1	85	134	1.4e-13	PFAM
Pfam:RCC1_2	121	151	1.5e-8	PFAM
Pfam:RCC1	137	187	1.7e-7	PFAM
Pfam:RCC1_2	174	203	3e-5	PFAM
Pfam:RCC1	190	255	9.6e-11	PFAM
Pfam:RCC1	258	309	1.9e-9	PFAM
Pfam:RCC1	312	360	5.7e-9	PFAM
Pfam:RCC1	363	414	3.9e-12	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000105960

SMART Domains

Protein: ENSMUSP00000101580
Gene: ENSMUSG00000028898

Domain	Start	End	E-Value	Type
PDB:2DHG\|A	21	70	9e-25	PDB
SCOP:d1fj7a_	22	70	7e-7	SMART
Blast:RRM	31	70	2e-21	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000105962

SMART Domains

Protein: ENSMUSP00000101582
Gene: ENSMUSG00000028898

Domain	Start	End	E-Value	Type
RRM	4	78	3.66e-8	SMART
PDB:2DHG\|A	87	137	7e-24	PDB
SCOP:d1cvja1	97	137	9e-5	SMART
Blast:RRM	97	138	2e-20	BLAST
low complexity region	145	164	N/A	INTRINSIC
low complexity region	173	189	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000125513
AA Change: D12G

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146166

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144387

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150959

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131524

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141317

Predicted Effect

probably benign
Transcript: ENSMUST00000147652

SMART Domains

Protein: ENSMUSP00000127273
Gene: ENSMUSG00000028898

Domain	Start	End	E-Value	Type
RRM	4	78	1.73e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000127402

SMART Domains

Protein: ENSMUSP00000120657
Gene: ENSMUSG00000028898

Domain	Start	End	E-Value	Type
RRM	4	78	3.66e-8	SMART
low complexity region	101	120	N/A	INTRINSIC
low complexity region	129	145	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000137520

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.0%
20x: 91.2%

Validation Efficiency

99% (73/74)

MGI Phenotype

PHENOTYPE: Mice homozygous for an allele lacking exons 7 and 8 exhibit prenatal lethality. Mice homozygous for a conditional allele activated in neurons exhibit impaired performance on a rotarod. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700030J22Rik	T	A	8: 117,698,421 (GRCm39)	K229*	probably null	Het
Adora2a	T	A	10: 75,161,992 (GRCm39)	S44T	probably damaging	Het
Agap3	T	C	5: 24,682,860 (GRCm39)	V459A	probably damaging	Het
Apc2	T	C	10: 80,137,148 (GRCm39)	V31A	probably benign	Het
Asic2	T	A	11: 80,862,429 (GRCm39)	K189N	possibly damaging	Het
Bbs10	C	T	10: 111,136,401 (GRCm39)	P505S	probably benign	Het
Brd10	A	T	19: 29,694,759 (GRCm39)	I1578K	probably benign	Het
Cdh20	G	T	1: 104,881,722 (GRCm39)	V396L	probably benign	Het
Cenpb	C	T	2: 131,020,091 (GRCm39)		probably benign	Het
Chil6	T	A	3: 106,301,659 (GRCm39)	Y147F	probably damaging	Het
Cluh	C	T	11: 74,552,772 (GRCm39)	R606C	probably damaging	Het
Cmtr1	A	G	17: 29,909,302 (GRCm39)	T404A	possibly damaging	Het
Cnot1	T	C	8: 96,467,636 (GRCm39)	N1499S	probably damaging	Het
Dmkn	T	C	7: 30,463,529 (GRCm39)	S61P	probably damaging	Het
Dmxl1	T	C	18: 50,003,990 (GRCm39)	C872R	probably benign	Het
Dnah3	A	G	7: 119,620,169 (GRCm39)	Y1587H	probably damaging	Het
Dsc2	A	T	18: 20,183,199 (GRCm39)	V73D	probably damaging	Het
F5	A	T	1: 164,019,601 (GRCm39)	Y692F	possibly damaging	Het
Fam184a	A	T	10: 53,550,670 (GRCm39)	L80I	probably damaging	Het
Foxj2	A	G	6: 122,810,833 (GRCm39)	H271R	probably benign	Het
Grm7	A	G	6: 111,057,404 (GRCm39)	T335A	probably damaging	Het
Hspa9	A	G	18: 35,071,734 (GRCm39)	L622P	probably damaging	Het
Kcna7	G	A	7: 45,056,015 (GRCm39)	R77H	probably damaging	Het
Kcnd3	T	A	3: 105,574,244 (GRCm39)		probably benign	Het
Klhdc8b	ACACGCACGCACGCACGCACGCACGCACGCACGCACGCAC	ACACGCACGCACGCACGCACGCACGCACGCACGCACGCACGCAC	9: 108,326,184 (GRCm39)		probably benign	Het
Klk14	G	A	7: 43,341,501 (GRCm39)	C51Y	probably damaging	Het
Lrch4	C	G	5: 137,635,113 (GRCm39)	N237K	probably damaging	Het
Lss	T	G	10: 76,388,760 (GRCm39)		probably null	Het
Map6	T	C	7: 98,985,859 (GRCm39)	F588L	probably benign	Het
Mbd6	C	T	10: 127,122,310 (GRCm39)	V173I	probably benign	Het
Med13	A	T	11: 86,219,391 (GRCm39)	S352T	probably benign	Het
Mettl16	T	A	11: 74,707,766 (GRCm39)	V320E	probably benign	Het
Myh7b	G	C	2: 155,474,293 (GRCm39)	R1669S	possibly damaging	Het
Nup188	T	A	2: 30,194,143 (GRCm39)	D149E	probably damaging	Het
Ogfrl1	A	G	1: 23,418,130 (GRCm39)	S83P	probably damaging	Het
Or52l1	T	A	7: 104,829,779 (GRCm39)	H262L	probably damaging	Het
Or5m13	T	A	2: 85,748,480 (GRCm39)	D70E	probably damaging	Het
Or8k36-ps1	T	A	2: 86,437,364 (GRCm39)	I184F	unknown	Het
Or9m1	T	C	2: 87,733,915 (GRCm39)	Y35C	probably damaging	Het
Pafah1b3	C	T	7: 24,994,764 (GRCm39)	R98Q	probably damaging	Het
Pde6b	A	T	5: 108,571,357 (GRCm39)	K437*	probably null	Het
Ppp1r12b	A	T	1: 134,762,130 (GRCm39)		probably benign	Het
Ppp1r12b	G	T	1: 134,883,471 (GRCm39)	A17E	probably benign	Het
Pramel34	T	C	5: 93,786,784 (GRCm39)		probably benign	Het
Prdm9	T	C	17: 15,782,679 (GRCm39)	Q104R	possibly damaging	Het
Rgs22	A	T	15: 36,050,391 (GRCm39)		probably null	Het
Rnf14	C	T	18: 38,441,441 (GRCm39)	P277L	probably damaging	Het
Robo4	T	C	9: 37,316,102 (GRCm39)	S258P	probably benign	Het
Sfrp1	T	A	8: 23,907,420 (GRCm39)	F207I	probably damaging	Het
Sgms1	A	G	19: 32,137,087 (GRCm39)	S160P	probably damaging	Het
Sil1	T	C	18: 35,402,755 (GRCm39)	K263R	probably benign	Het
St14	A	G	9: 31,008,847 (GRCm39)		probably null	Het
Syne2	A	G	12: 75,955,905 (GRCm39)		probably benign	Het
Tbc1d9	T	C	8: 83,995,835 (GRCm39)	S1013P	probably benign	Het
Tent5b	C	T	4: 133,207,749 (GRCm39)	R47W	possibly damaging	Het
Tmem67	T	C	4: 12,070,471 (GRCm39)	S352G	probably benign	Het
Trib2	C	A	12: 15,843,795 (GRCm39)	K282N	possibly damaging	Het
Trpm4	T	C	7: 44,958,054 (GRCm39)	D952G	probably damaging	Het
Unc93b1	A	G	19: 3,992,762 (GRCm39)	N305D	possibly damaging	Het
Usp32	A	G	11: 84,917,621 (GRCm39)	V802A	probably benign	Het
Vmn2r48	T	A	7: 9,676,251 (GRCm39)	H410L	probably damaging	Het
Wfs1	T	C	5: 37,132,931 (GRCm39)	N116S	probably benign	Het
Wif1	A	T	10: 120,935,684 (GRCm39)	H333L	probably benign	Het
Zfp109	T	C	7: 23,928,162 (GRCm39)	T416A	possibly damaging	Het
Zfp808	T	A	13: 62,320,444 (GRCm39)	C558S	probably damaging	Het
Zpbp	T	C	11: 11,409,734 (GRCm39)	D116G	possibly damaging	Het

Other mutations in Trnau1ap

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00944:Trnau1ap	APN	4	132,055,817 (GRCm39)	missense	possibly damaging	0.95
IGL01926:Trnau1ap	APN	4	132,046,873 (GRCm39)	missense	probably benign	0.39
IGL01970:Trnau1ap	APN	4	132,041,298 (GRCm39)	splice site	probably benign
IGL02336:Trnau1ap	APN	4	132,041,331 (GRCm39)	nonsense	probably null
IGL03248:Trnau1ap	APN	4	132,049,114 (GRCm39)	missense	probably damaging	1.00
IGL03046:Trnau1ap	UTSW	4	132,039,252 (GRCm39)	missense	probably damaging	1.00
R0079:Trnau1ap	UTSW	4	132,041,656 (GRCm39)	missense	probably damaging	1.00
R1940:Trnau1ap	UTSW	4	132,049,114 (GRCm39)	missense	probably damaging	1.00
R2849:Trnau1ap	UTSW	4	132,049,045 (GRCm39)	missense	possibly damaging	0.69
R4683:Trnau1ap	UTSW	4	132,049,063 (GRCm39)	missense	probably damaging	1.00
R5819:Trnau1ap	UTSW	4	132,052,521 (GRCm39)	splice site	probably benign
R6803:Trnau1ap	UTSW	4	132,049,081 (GRCm39)	missense	probably damaging	0.99
R9069:Trnau1ap	UTSW	4	132,056,662 (GRCm39)	critical splice donor site	probably null
R9183:Trnau1ap	UTSW	4	132,052,565 (GRCm39)	missense	probably damaging	1.00
R9314:Trnau1ap	UTSW	4	132,056,697 (GRCm39)	start gained	probably benign

Predicted Primers

PCR Primer
(F):5'- AGCAAAAGGTTGGCTTTGTAC -3'
(R):5'- TTCAGAAGTACAAGGTTTGGGG -3'

Sequencing Primer
(F):5'- ATTCAGGATGATGGCACCTGC -3'
(R):5'- GTTGGAGACCTTGGATCCATGATAAC -3'

Posted On

2016-06-06