Mutagenetix > Incidental Mutation

Incidental Mutation 'R5119:Cdk8'

392809

Institutional Source

Beutler Lab

Gene Symbol

Cdk8

Ensembl Gene

ENSMUSG00000029635

Gene Name

cyclin dependent kinase 8

Synonyms

MMRRC Submission

042707-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5119 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

146168040-146239684 bp(+) (GRCm39)

Type of Mutation

critical splice acceptor site

DNA Base Change (assembly)

A to T at 146220437 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000124323 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031640] [ENSMUST00000031640] [ENSMUST00000161181] [ENSMUST00000161181] [ENSMUST00000161652] [ENSMUST00000161652] [ENSMUST00000162494]

AlphaFold

Q8R3L8

Predicted Effect

probably null
Transcript: ENSMUST00000031640

SMART Domains

Protein: ENSMUSP00000031640
Gene: ENSMUSG00000029635

Domain	Start	End	E-Value	Type
S_TKc	21	335	1.89e-83	SMART
low complexity region	372	391	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000031640

SMART Domains

Protein: ENSMUSP00000031640
Gene: ENSMUSG00000029635

Domain	Start	End	E-Value	Type
S_TKc	21	335	1.89e-83	SMART
low complexity region	372	391	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000161181

SMART Domains

Protein: ENSMUSP00000125668
Gene: ENSMUSG00000029635

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	1	179	6e-16	PFAM
Pfam:Pkinase	1	270	1.6e-44	PFAM
low complexity region	307	326	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000161181

SMART Domains

Protein: ENSMUSP00000125668
Gene: ENSMUSG00000029635

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	1	179	6e-16	PFAM
Pfam:Pkinase	1	270	1.6e-44	PFAM
low complexity region	307	326	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000161652

SMART Domains

Protein: ENSMUSP00000124323
Gene: ENSMUSG00000029635

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	22	215	2e-22	PFAM
Pfam:Pkinase	23	226	5.2e-42	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000161652

SMART Domains

Protein: ENSMUSP00000124323
Gene: ENSMUSG00000029635

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	22	215	2e-22	PFAM
Pfam:Pkinase	23	226	5.2e-42	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000162494

SMART Domains

Protein: ENSMUSP00000125516
Gene: ENSMUSG00000029635

Domain	Start	End	E-Value	Type
Pfam:Pkinase	22	153	5.9e-25	PFAM
Pfam:Pkinase_Tyr	22	156	1.5e-15	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000198861

Meta Mutation Damage Score

0.9493

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 94.1%

Validation Efficiency

100% (127/127)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the cyclin-dependent protein kinase (CDK) family. CDK family members are known to be important regulators of cell cycle progression. This kinase and its regulatory subunit, cyclin C, are components of the Mediator transcriptional regulatory complex, involved in both transcriptional activation and repression by phosphorylation of the carboxy-terminal domain of the largest subunit of RNA polymerase II. This kinase regulates transcription by targeting the cyclin-dependent kinase 7 subunits of the general transcription initiation factor IIH, thus providing a link between the Mediator complex and the basal transcription machinery. Multiple pseudogenes of this gene have been identified. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2016]
PHENOTYPE: Mice homozygous for a gene-trapped allele die prior to implantation exhibiting fragmented blastomeres and failure to undergo compaction. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 120 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930470P17Rik	C	A	2: 170,421,505 (GRCm39)	G125V	unknown	Het
Actr6	A	T	10: 89,561,717 (GRCm39)	L143Q	probably damaging	Het
Adamts18	A	G	8: 114,425,642 (GRCm39)	Y1207H	probably benign	Het
Adamts5	T	A	16: 85,696,466 (GRCm39)	R230S	probably benign	Het
Adat2	A	T	10: 13,432,650 (GRCm39)	N51Y	probably damaging	Het
Adgrv1	T	C	13: 81,567,546 (GRCm39)	Y5209C	possibly damaging	Het
Ahnak	G	T	19: 8,991,008 (GRCm39)	M4097I	probably benign	Het
Akap13	A	G	7: 75,337,000 (GRCm39)	T820A	probably damaging	Het
Als2cl	C	T	9: 110,719,887 (GRCm39)	R492C	probably damaging	Het
Aox3	G	A	1: 58,227,683 (GRCm39)		probably null	Het
Arid4b	G	A	13: 14,338,866 (GRCm39)	V446M	probably benign	Het
Armc2	A	G	10: 41,798,144 (GRCm39)	L794P	probably damaging	Het
Atp6v0a1	T	A	11: 100,911,341 (GRCm39)	M80K	probably benign	Het
Aup1	T	C	6: 83,032,115 (GRCm39)	V94A	probably damaging	Het
Bank1	A	T	3: 135,940,443 (GRCm39)	I180K	possibly damaging	Het
Becn1	A	G	11: 101,182,221 (GRCm39)	L116P	probably damaging	Het
Bsg	A	G	10: 79,546,057 (GRCm39)		probably benign	Het
Camk2a	A	T	18: 61,076,208 (GRCm39)		probably benign	Het
Ccdc180	A	G	4: 45,914,603 (GRCm39)	E706G	possibly damaging	Het
Cpne4	A	G	9: 104,778,720 (GRCm39)		probably null	Het
Cspp1	T	A	1: 10,196,688 (GRCm39)	N900K	probably damaging	Het
Cyp2c38	C	A	19: 39,449,065 (GRCm39)	G96V	probably damaging	Het
Dhx40	A	G	11: 86,667,462 (GRCm39)	I261T	probably damaging	Het
Dnah10	T	C	5: 124,856,322 (GRCm39)	F2038L	probably damaging	Het
Dnah7a	A	T	1: 53,737,851 (GRCm39)	D27E	probably benign	Het
Dock10	A	T	1: 80,545,711 (GRCm39)		probably null	Het
Dst	A	T	1: 34,235,050 (GRCm39)	K3710*	probably null	Het
Dtl	G	T	1: 191,273,618 (GRCm39)	A430D	probably damaging	Het
Ece2	T	C	16: 20,437,381 (GRCm39)	L241P	probably damaging	Het
Ecel1	T	A	1: 87,078,861 (GRCm39)	Y526F	probably benign	Het
Enpp2	T	A	15: 54,733,701 (GRCm39)	R420*	probably null	Het
Epb41	A	C	4: 131,664,747 (GRCm39)		probably benign	Het
Eppin	T	C	2: 164,431,371 (GRCm39)	Y85C	probably damaging	Het
Fam171a2	G	A	11: 102,329,559 (GRCm39)	A400V	probably damaging	Het
Fem1c	A	C	18: 46,639,436 (GRCm39)	C189G	probably damaging	Het
Frmd4b	A	G	6: 97,277,275 (GRCm39)	V560A	probably benign	Het
Fsip2	A	T	2: 82,818,535 (GRCm39)	D4756V	probably damaging	Het
Gabbr1	T	C	17: 37,359,330 (GRCm39)	S102P	probably damaging	Het
Garin3	G	A	11: 46,297,863 (GRCm39)	G389D	probably damaging	Het
Gm28042	G	A	2: 119,865,124 (GRCm39)	A250T	probably damaging	Het
Gm30275	T	C	14: 54,312,978 (GRCm39)		probably benign	Het
Gm9762	A	T	3: 78,873,707 (GRCm39)		noncoding transcript	Het
Gpr183	G	T	14: 122,192,275 (GRCm39)	T82N	possibly damaging	Het
Gps2	A	G	11: 69,805,617 (GRCm39)	K45R	probably benign	Het
Gramd2a	A	G	9: 59,621,603 (GRCm39)		probably benign	Het
Grap2	G	A	15: 80,530,345 (GRCm39)	R155Q	possibly damaging	Het
Hsdl1	T	A	8: 120,292,606 (GRCm39)	Y203F	possibly damaging	Het
Ifi204	A	T	1: 173,583,234 (GRCm39)	I328N	probably damaging	Het
Igsf3	T	A	3: 101,346,677 (GRCm39)		probably null	Het
Il1rap	T	C	16: 26,442,949 (GRCm39)	I15T	probably benign	Het
Il23r	A	T	6: 67,443,300 (GRCm39)	C268S	probably damaging	Het
Irx4	A	G	13: 73,417,040 (GRCm39)	T479A	probably benign	Het
Kcnk7	G	A	19: 5,756,352 (GRCm39)	V193I	probably benign	Het
Kcnt1	G	T	2: 25,799,334 (GRCm39)		probably benign	Het
Kif13b	T	G	14: 64,994,902 (GRCm39)	C885G	probably benign	Het
Kif21b	C	A	1: 136,090,838 (GRCm39)	D1215E	probably benign	Het
Klhdc2	A	G	12: 69,343,736 (GRCm39)		probably benign	Het
Kmt2d	G	A	15: 98,745,075 (GRCm39)		probably benign	Het
Lama4	A	G	10: 38,924,050 (GRCm39)	N486S	probably benign	Het
Ldah	G	A	12: 8,277,237 (GRCm39)	A58T	probably benign	Het
Lrrc24	T	C	15: 76,600,200 (GRCm39)	Q313R	probably benign	Het
Luzp1	A	G	4: 136,270,708 (GRCm39)	D977G	possibly damaging	Het
Meak7	A	C	8: 120,494,882 (GRCm39)	L292R	probably damaging	Het
Mrgpra4	A	G	7: 47,631,466 (GRCm39)	L45P	probably damaging	Het
Mrps28	C	T	3: 8,988,756 (GRCm39)	G34D	possibly damaging	Het
Myh8	A	G	11: 67,189,184 (GRCm39)	E1120G	probably damaging	Het
Myt1l	A	G	12: 29,882,302 (GRCm39)	E499G	unknown	Het
Ncan	C	T	8: 70,567,675 (GRCm39)	E146K	probably damaging	Het
Nlgn1	A	T	3: 25,487,958 (GRCm39)	D763E	probably damaging	Het
Or11g26	T	C	14: 50,752,966 (GRCm39)	F102L	probably benign	Het
Or13c7c	G	T	4: 43,836,433 (GRCm39)	A19D	probably benign	Het
Or1e17	A	T	11: 73,831,378 (GRCm39)	Y102F	possibly damaging	Het
Or4c12	A	T	2: 89,774,147 (GRCm39)	I104N	possibly damaging	Het
Or5b118	C	T	19: 13,448,910 (GRCm39)	T192I	probably benign	Het
Or6c8b	T	A	10: 128,882,711 (GRCm39)	I74F	possibly damaging	Het
Pak6	A	T	2: 118,525,029 (GRCm39)	I552F	probably damaging	Het
Pcbp1	G	A	6: 86,501,897 (GRCm39)	A334V	probably damaging	Het
Pclaf	T	C	9: 65,798,062 (GRCm39)	V32A	probably benign	Het
Pga5	T	A	19: 10,654,053 (GRCm39)	H50L	probably benign	Het
Phyhipl	A	T	10: 70,404,904 (GRCm39)	D56E	probably damaging	Het
Pik3ap1	C	T	19: 41,270,415 (GRCm39)	R758H	probably benign	Het
Plekha1	A	G	7: 130,507,094 (GRCm39)		probably benign	Het
Plekhm1	A	T	11: 103,278,141 (GRCm39)	N318K	possibly damaging	Het
Ppargc1b	G	A	18: 61,440,725 (GRCm39)	A731V	probably benign	Het
Pptc7	T	C	5: 122,451,844 (GRCm39)	V100A	possibly damaging	Het
Prl7a1	A	T	13: 27,817,564 (GRCm39)	H233Q	possibly damaging	Het
Prpf40a	A	G	2: 53,034,861 (GRCm39)	F776L	probably damaging	Het
Prrc2c	T	C	1: 162,533,009 (GRCm39)		probably benign	Het
Psmb1	T	C	17: 15,718,524 (GRCm39)	M1V	probably null	Het
Ptpn3	A	G	4: 57,218,513 (GRCm39)	F650S	possibly damaging	Het
Ranbp17	A	T	11: 33,354,181 (GRCm39)	*577R	probably null	Het
Reln	T	A	5: 22,176,868 (GRCm39)	N1933Y	probably benign	Het
Rgl2	T	A	17: 34,156,094 (GRCm39)	H727Q	probably benign	Het
Rhpn2	A	G	7: 35,070,549 (GRCm39)	T160A	probably damaging	Het
Rlf	G	A	4: 121,004,652 (GRCm39)	H1443Y	probably damaging	Het
Rpgrip1l	T	C	8: 92,007,444 (GRCm39)	E382G	probably damaging	Het
Rxrb	T	C	17: 34,252,562 (GRCm39)	S50P	probably benign	Het
Scn4b	A	T	9: 45,059,056 (GRCm39)	E109V	probably damaging	Het
Scrib	C	T	15: 75,923,602 (GRCm39)		probably null	Het
Slc22a29	A	T	19: 8,195,194 (GRCm39)	V147D	probably damaging	Het
Slc4a4	A	T	5: 89,102,721 (GRCm39)	E53V	probably null	Het
Slx4	A	G	16: 3,819,063 (GRCm39)	S37P	possibly damaging	Het
Spag9	G	A	11: 94,013,548 (GRCm39)	G1127D	probably damaging	Het
Srek1	T	A	13: 103,889,064 (GRCm39)		probably benign	Het
Supt5	G	T	7: 28,015,795 (GRCm39)	P849Q	probably damaging	Het
Tex14	T	C	11: 87,324,639 (GRCm39)	S2P	probably damaging	Het
Them7	A	G	2: 105,209,153 (GRCm39)	T158A	probably benign	Het
Tll2	A	G	19: 41,118,948 (GRCm39)	V260A	possibly damaging	Het
Tlr6	A	G	5: 65,111,644 (GRCm39)	V421A	probably benign	Het
Tmc3	T	G	7: 83,264,218 (GRCm39)	C649G	probably damaging	Het
Tnn	A	G	1: 159,948,122 (GRCm39)	W864R	probably damaging	Het
Tsc2	A	C	17: 24,822,254 (GRCm39)	V1095G	probably benign	Het
Vmn1r124	C	T	7: 20,994,172 (GRCm39)	G124D	probably damaging	Het
Vmn2r116	T	C	17: 23,606,138 (GRCm39)	V350A	probably benign	Het
Vps13d	A	G	4: 144,832,468 (GRCm39)	S2813P	possibly damaging	Het
Wrap53	T	A	11: 69,454,758 (GRCm39)	M204L	possibly damaging	Het
Zfp277	A	G	12: 40,378,687 (GRCm39)	V390A	possibly damaging	Het
Zfp687	A	T	3: 94,918,987 (GRCm39)	S262T	probably benign	Het
Zfp831	T	A	2: 174,547,103 (GRCm39)	S1429T	probably benign	Het
Znfx1	G	A	2: 166,907,307 (GRCm39)		probably benign	Het

Other mutations in Cdk8

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01476:Cdk8	APN	5	146,231,973 (GRCm39)	splice site	probably null
R0506:Cdk8	UTSW	5	146,235,682 (GRCm39)	missense	probably damaging	1.00
R1132:Cdk8	UTSW	5	146,236,625 (GRCm39)	missense	probably benign	0.09
R1513:Cdk8	UTSW	5	146,233,188 (GRCm39)	missense	possibly damaging	0.93
R2231:Cdk8	UTSW	5	146,168,414 (GRCm39)	start gained	probably benign
R3692:Cdk8	UTSW	5	146,220,478 (GRCm39)	nonsense	probably null
R4157:Cdk8	UTSW	5	146,236,259 (GRCm39)	intron	probably benign
R4760:Cdk8	UTSW	5	146,229,476 (GRCm39)	missense	probably benign	0.15
R4804:Cdk8	UTSW	5	146,233,209 (GRCm39)	missense	probably damaging	1.00
R6633:Cdk8	UTSW	5	146,235,656 (GRCm39)	nonsense	probably null
R6755:Cdk8	UTSW	5	146,205,126 (GRCm39)	missense	probably damaging	1.00
R7442:Cdk8	UTSW	5	146,229,579 (GRCm39)	critical splice donor site	probably null
R7936:Cdk8	UTSW	5	146,236,644 (GRCm39)	missense	possibly damaging	0.49
R8083:Cdk8	UTSW	5	146,205,100 (GRCm39)	missense	probably damaging	1.00
R8315:Cdk8	UTSW	5	146,205,061 (GRCm39)	missense	probably damaging	1.00
R9159:Cdk8	UTSW	5	146,168,549 (GRCm39)	missense	probably damaging	1.00
R9643:Cdk8	UTSW	5	146,235,664 (GRCm39)	missense	probably damaging	1.00
R9738:Cdk8	UTSW	5	146,236,539 (GRCm39)	missense	probably benign	0.08
Z1177:Cdk8	UTSW	5	146,238,447 (GRCm39)	missense	probably benign	0.00
Z1177:Cdk8	UTSW	5	146,236,606 (GRCm39)	missense	probably damaging	0.99
Z1177:Cdk8	UTSW	5	146,236,605 (GRCm39)	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- GCTATCTGTGATGAGGCCTG -3'
(R):5'- TTGTTCTCTAAGGACTGTCTGAGAC -3'

Sequencing Primer
(F):5'- CTGTGTGTGGCTTTGCTTGTATATAC -3'
(R):5'- CTGAGACAGGGGGAAGGTGTTC -3'

Posted On

2016-06-15