Incidental Mutation 'R5119:Lama4'
| ID |
392833 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Lama4
|
| Ensembl Gene |
ENSMUSG00000019846 |
| Gene Name |
laminin, alpha 4 |
| Synonyms |
laminin [a]4 |
| MMRRC Submission |
042707-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R5119 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
10 |
| Chromosomal Location |
38841511-38986184 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 38924050 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Asparagine to Serine
at position 486
(N486S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000019992
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000019992]
|
| AlphaFold |
P97927 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000019992
AA Change: N486S
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
| SMART Domains |
Protein: ENSMUSP00000019992
Gene: ENSMUSG00000019846
AA Change: N486S
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
24 |
N/A |
INTRINSIC |
|
EGF_Lam
|
82 |
129 |
1.95e-8 |
SMART |
|
EGF_Lam
|
132 |
184 |
5.78e-11 |
SMART |
|
EGF_Lam
|
187 |
238 |
9.83e-14 |
SMART |
|
Pfam:Laminin_I
|
283 |
548 |
5.3e-71 |
PFAM |
|
coiled coil region
|
658 |
685 |
N/A |
INTRINSIC |
|
LamG
|
850 |
1009 |
9.54e-11 |
SMART |
|
LamG
|
1066 |
1205 |
5.9e-25 |
SMART |
|
LamG
|
1250 |
1374 |
6.68e-24 |
SMART |
|
LamG
|
1484 |
1619 |
1.54e-37 |
SMART |
|
LamG
|
1661 |
1794 |
3.63e-34 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000159580
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000162211
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 96.8%
- 20x: 94.1%
|
| Validation Efficiency |
100% (127/127) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Laminins are composed of 3 non identical chains: laminin alpha, beta and gamma (formerly A, B1, and B2, respectively) and they form a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains. Each laminin chain is a multidomain protein encoded by a distinct gene. Several isoforms of each chain have been described. Different alpha, beta and gamma chain isomers combine to give rise to different heterotrimeric laminin isoforms which are designated by Arabic numerals in the order of their discovery, i.e. alpha1beta1gamma1 heterotrimer is laminin 1. The biological functions of the different chains and trimer molecules are largely unknown, but some of the chains have been shown to differ with respect to their tissue distribution, presumably reflecting diverse functions in vivo. This gene encodes the alpha chain isoform laminin, alpha 4. The domain structure of alpha 4 is similar to that of alpha 3, both of which resemble truncated versions of alpha 1 and alpha 2, in that approximately 1,200 residues at the N-terminus (domains IV, V and VI) have been lost. Laminin, alpha 4 contains the C-terminal G domain which distinguishes all alpha chains from the beta and gamma chains. The RNA analysis from adult and fetal tissues revealed developmental regulation of expression, however, the exact function of laminin, alpha 4 is not known. Tissue-specific utilization of alternative polyA-signal has been described in literature. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Aug 2011]
PHENOTYPE: Homozygotes for targeted null mutations exhibit impaired motor control of the hind limbs associated with improperly positioned synaptic active zones and junctional folds, and prenatal and neonatal hemorrhages associated with capillary defects. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 120 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4930470P17Rik |
C |
A |
2: 170,421,505 (GRCm39) |
G125V |
unknown |
Het |
| Actr6 |
A |
T |
10: 89,561,717 (GRCm39) |
L143Q |
probably damaging |
Het |
| Adamts18 |
A |
G |
8: 114,425,642 (GRCm39) |
Y1207H |
probably benign |
Het |
| Adamts5 |
T |
A |
16: 85,696,466 (GRCm39) |
R230S |
probably benign |
Het |
| Adat2 |
A |
T |
10: 13,432,650 (GRCm39) |
N51Y |
probably damaging |
Het |
| Adgrv1 |
T |
C |
13: 81,567,546 (GRCm39) |
Y5209C |
possibly damaging |
Het |
| Ahnak |
G |
T |
19: 8,991,008 (GRCm39) |
M4097I |
probably benign |
Het |
| Akap13 |
A |
G |
7: 75,337,000 (GRCm39) |
T820A |
probably damaging |
Het |
| Als2cl |
C |
T |
9: 110,719,887 (GRCm39) |
R492C |
probably damaging |
Het |
| Aox3 |
G |
A |
1: 58,227,683 (GRCm39) |
|
probably null |
Het |
| Arid4b |
G |
A |
13: 14,338,866 (GRCm39) |
V446M |
probably benign |
Het |
| Armc2 |
A |
G |
10: 41,798,144 (GRCm39) |
L794P |
probably damaging |
Het |
| Atp6v0a1 |
T |
A |
11: 100,911,341 (GRCm39) |
M80K |
probably benign |
Het |
| Aup1 |
T |
C |
6: 83,032,115 (GRCm39) |
V94A |
probably damaging |
Het |
| Bank1 |
A |
T |
3: 135,940,443 (GRCm39) |
I180K |
possibly damaging |
Het |
| Becn1 |
A |
G |
11: 101,182,221 (GRCm39) |
L116P |
probably damaging |
Het |
| Bsg |
A |
G |
10: 79,546,057 (GRCm39) |
|
probably benign |
Het |
| Camk2a |
A |
T |
18: 61,076,208 (GRCm39) |
|
probably benign |
Het |
| Ccdc180 |
A |
G |
4: 45,914,603 (GRCm39) |
E706G |
possibly damaging |
Het |
| Cdk8 |
A |
T |
5: 146,220,437 (GRCm39) |
|
probably null |
Het |
| Cpne4 |
A |
G |
9: 104,778,720 (GRCm39) |
|
probably null |
Het |
| Cspp1 |
T |
A |
1: 10,196,688 (GRCm39) |
N900K |
probably damaging |
Het |
| Cyp2c38 |
C |
A |
19: 39,449,065 (GRCm39) |
G96V |
probably damaging |
Het |
| Dhx40 |
A |
G |
11: 86,667,462 (GRCm39) |
I261T |
probably damaging |
Het |
| Dnah10 |
T |
C |
5: 124,856,322 (GRCm39) |
F2038L |
probably damaging |
Het |
| Dnah7a |
A |
T |
1: 53,737,851 (GRCm39) |
D27E |
probably benign |
Het |
| Dock10 |
A |
T |
1: 80,545,711 (GRCm39) |
|
probably null |
Het |
| Dst |
A |
T |
1: 34,235,050 (GRCm39) |
K3710* |
probably null |
Het |
| Dtl |
G |
T |
1: 191,273,618 (GRCm39) |
A430D |
probably damaging |
Het |
| Ece2 |
T |
C |
16: 20,437,381 (GRCm39) |
L241P |
probably damaging |
Het |
| Ecel1 |
T |
A |
1: 87,078,861 (GRCm39) |
Y526F |
probably benign |
Het |
| Enpp2 |
T |
A |
15: 54,733,701 (GRCm39) |
R420* |
probably null |
Het |
| Epb41 |
A |
C |
4: 131,664,747 (GRCm39) |
|
probably benign |
Het |
| Eppin |
T |
C |
2: 164,431,371 (GRCm39) |
Y85C |
probably damaging |
Het |
| Fam171a2 |
G |
A |
11: 102,329,559 (GRCm39) |
A400V |
probably damaging |
Het |
| Fem1c |
A |
C |
18: 46,639,436 (GRCm39) |
C189G |
probably damaging |
Het |
| Frmd4b |
A |
G |
6: 97,277,275 (GRCm39) |
V560A |
probably benign |
Het |
| Fsip2 |
A |
T |
2: 82,818,535 (GRCm39) |
D4756V |
probably damaging |
Het |
| Gabbr1 |
T |
C |
17: 37,359,330 (GRCm39) |
S102P |
probably damaging |
Het |
| Garin3 |
G |
A |
11: 46,297,863 (GRCm39) |
G389D |
probably damaging |
Het |
| Gm28042 |
G |
A |
2: 119,865,124 (GRCm39) |
A250T |
probably damaging |
Het |
| Gm30275 |
T |
C |
14: 54,312,978 (GRCm39) |
|
probably benign |
Het |
| Gm9762 |
A |
T |
3: 78,873,707 (GRCm39) |
|
noncoding transcript |
Het |
| Gpr183 |
G |
T |
14: 122,192,275 (GRCm39) |
T82N |
possibly damaging |
Het |
| Gps2 |
A |
G |
11: 69,805,617 (GRCm39) |
K45R |
probably benign |
Het |
| Gramd2a |
A |
G |
9: 59,621,603 (GRCm39) |
|
probably benign |
Het |
| Grap2 |
G |
A |
15: 80,530,345 (GRCm39) |
R155Q |
possibly damaging |
Het |
| Hsdl1 |
T |
A |
8: 120,292,606 (GRCm39) |
Y203F |
possibly damaging |
Het |
| Ifi204 |
A |
T |
1: 173,583,234 (GRCm39) |
I328N |
probably damaging |
Het |
| Igsf3 |
T |
A |
3: 101,346,677 (GRCm39) |
|
probably null |
Het |
| Il1rap |
T |
C |
16: 26,442,949 (GRCm39) |
I15T |
probably benign |
Het |
| Il23r |
A |
T |
6: 67,443,300 (GRCm39) |
C268S |
probably damaging |
Het |
| Irx4 |
A |
G |
13: 73,417,040 (GRCm39) |
T479A |
probably benign |
Het |
| Kcnk7 |
G |
A |
19: 5,756,352 (GRCm39) |
V193I |
probably benign |
Het |
| Kcnt1 |
G |
T |
2: 25,799,334 (GRCm39) |
|
probably benign |
Het |
| Kif13b |
T |
G |
14: 64,994,902 (GRCm39) |
C885G |
probably benign |
Het |
| Kif21b |
C |
A |
1: 136,090,838 (GRCm39) |
D1215E |
probably benign |
Het |
| Klhdc2 |
A |
G |
12: 69,343,736 (GRCm39) |
|
probably benign |
Het |
| Kmt2d |
G |
A |
15: 98,745,075 (GRCm39) |
|
probably benign |
Het |
| Ldah |
G |
A |
12: 8,277,237 (GRCm39) |
A58T |
probably benign |
Het |
| Lrrc24 |
T |
C |
15: 76,600,200 (GRCm39) |
Q313R |
probably benign |
Het |
| Luzp1 |
A |
G |
4: 136,270,708 (GRCm39) |
D977G |
possibly damaging |
Het |
| Meak7 |
A |
C |
8: 120,494,882 (GRCm39) |
L292R |
probably damaging |
Het |
| Mrgpra4 |
A |
G |
7: 47,631,466 (GRCm39) |
L45P |
probably damaging |
Het |
| Mrps28 |
C |
T |
3: 8,988,756 (GRCm39) |
G34D |
possibly damaging |
Het |
| Myh8 |
A |
G |
11: 67,189,184 (GRCm39) |
E1120G |
probably damaging |
Het |
| Myt1l |
A |
G |
12: 29,882,302 (GRCm39) |
E499G |
unknown |
Het |
| Ncan |
C |
T |
8: 70,567,675 (GRCm39) |
E146K |
probably damaging |
Het |
| Nlgn1 |
A |
T |
3: 25,487,958 (GRCm39) |
D763E |
probably damaging |
Het |
| Or11g26 |
T |
C |
14: 50,752,966 (GRCm39) |
F102L |
probably benign |
Het |
| Or13c7c |
G |
T |
4: 43,836,433 (GRCm39) |
A19D |
probably benign |
Het |
| Or1e17 |
A |
T |
11: 73,831,378 (GRCm39) |
Y102F |
possibly damaging |
Het |
| Or4c12 |
A |
T |
2: 89,774,147 (GRCm39) |
I104N |
possibly damaging |
Het |
| Or5b118 |
C |
T |
19: 13,448,910 (GRCm39) |
T192I |
probably benign |
Het |
| Or6c8b |
T |
A |
10: 128,882,711 (GRCm39) |
I74F |
possibly damaging |
Het |
| Pak6 |
A |
T |
2: 118,525,029 (GRCm39) |
I552F |
probably damaging |
Het |
| Pcbp1 |
G |
A |
6: 86,501,897 (GRCm39) |
A334V |
probably damaging |
Het |
| Pclaf |
T |
C |
9: 65,798,062 (GRCm39) |
V32A |
probably benign |
Het |
| Pga5 |
T |
A |
19: 10,654,053 (GRCm39) |
H50L |
probably benign |
Het |
| Phyhipl |
A |
T |
10: 70,404,904 (GRCm39) |
D56E |
probably damaging |
Het |
| Pik3ap1 |
C |
T |
19: 41,270,415 (GRCm39) |
R758H |
probably benign |
Het |
| Plekha1 |
A |
G |
7: 130,507,094 (GRCm39) |
|
probably benign |
Het |
| Plekhm1 |
A |
T |
11: 103,278,141 (GRCm39) |
N318K |
possibly damaging |
Het |
| Ppargc1b |
G |
A |
18: 61,440,725 (GRCm39) |
A731V |
probably benign |
Het |
| Pptc7 |
T |
C |
5: 122,451,844 (GRCm39) |
V100A |
possibly damaging |
Het |
| Prl7a1 |
A |
T |
13: 27,817,564 (GRCm39) |
H233Q |
possibly damaging |
Het |
| Prpf40a |
A |
G |
2: 53,034,861 (GRCm39) |
F776L |
probably damaging |
Het |
| Prrc2c |
T |
C |
1: 162,533,009 (GRCm39) |
|
probably benign |
Het |
| Psmb1 |
T |
C |
17: 15,718,524 (GRCm39) |
M1V |
probably null |
Het |
| Ptpn3 |
A |
G |
4: 57,218,513 (GRCm39) |
F650S |
possibly damaging |
Het |
| Ranbp17 |
A |
T |
11: 33,354,181 (GRCm39) |
*577R |
probably null |
Het |
| Reln |
T |
A |
5: 22,176,868 (GRCm39) |
N1933Y |
probably benign |
Het |
| Rgl2 |
T |
A |
17: 34,156,094 (GRCm39) |
H727Q |
probably benign |
Het |
| Rhpn2 |
A |
G |
7: 35,070,549 (GRCm39) |
T160A |
probably damaging |
Het |
| Rlf |
G |
A |
4: 121,004,652 (GRCm39) |
H1443Y |
probably damaging |
Het |
| Rpgrip1l |
T |
C |
8: 92,007,444 (GRCm39) |
E382G |
probably damaging |
Het |
| Rxrb |
T |
C |
17: 34,252,562 (GRCm39) |
S50P |
probably benign |
Het |
| Scn4b |
A |
T |
9: 45,059,056 (GRCm39) |
E109V |
probably damaging |
Het |
| Scrib |
C |
T |
15: 75,923,602 (GRCm39) |
|
probably null |
Het |
| Slc22a29 |
A |
T |
19: 8,195,194 (GRCm39) |
V147D |
probably damaging |
Het |
| Slc4a4 |
A |
T |
5: 89,102,721 (GRCm39) |
E53V |
probably null |
Het |
| Slx4 |
A |
G |
16: 3,819,063 (GRCm39) |
S37P |
possibly damaging |
Het |
| Spag9 |
G |
A |
11: 94,013,548 (GRCm39) |
G1127D |
probably damaging |
Het |
| Srek1 |
T |
A |
13: 103,889,064 (GRCm39) |
|
probably benign |
Het |
| Supt5 |
G |
T |
7: 28,015,795 (GRCm39) |
P849Q |
probably damaging |
Het |
| Tex14 |
T |
C |
11: 87,324,639 (GRCm39) |
S2P |
probably damaging |
Het |
| Them7 |
A |
G |
2: 105,209,153 (GRCm39) |
T158A |
probably benign |
Het |
| Tll2 |
A |
G |
19: 41,118,948 (GRCm39) |
V260A |
possibly damaging |
Het |
| Tlr6 |
A |
G |
5: 65,111,644 (GRCm39) |
V421A |
probably benign |
Het |
| Tmc3 |
T |
G |
7: 83,264,218 (GRCm39) |
C649G |
probably damaging |
Het |
| Tnn |
A |
G |
1: 159,948,122 (GRCm39) |
W864R |
probably damaging |
Het |
| Tsc2 |
A |
C |
17: 24,822,254 (GRCm39) |
V1095G |
probably benign |
Het |
| Vmn1r124 |
C |
T |
7: 20,994,172 (GRCm39) |
G124D |
probably damaging |
Het |
| Vmn2r116 |
T |
C |
17: 23,606,138 (GRCm39) |
V350A |
probably benign |
Het |
| Vps13d |
A |
G |
4: 144,832,468 (GRCm39) |
S2813P |
possibly damaging |
Het |
| Wrap53 |
T |
A |
11: 69,454,758 (GRCm39) |
M204L |
possibly damaging |
Het |
| Zfp277 |
A |
G |
12: 40,378,687 (GRCm39) |
V390A |
possibly damaging |
Het |
| Zfp687 |
A |
T |
3: 94,918,987 (GRCm39) |
S262T |
probably benign |
Het |
| Zfp831 |
T |
A |
2: 174,547,103 (GRCm39) |
S1429T |
probably benign |
Het |
| Znfx1 |
G |
A |
2: 166,907,307 (GRCm39) |
|
probably benign |
Het |
|
| Other mutations in Lama4 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00088:Lama4
|
APN |
10 |
38,941,591 (GRCm39) |
splice site |
probably benign |
|
|
IGL00091:Lama4
|
APN |
10 |
38,948,801 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL00429:Lama4
|
APN |
10 |
38,887,022 (GRCm39) |
missense |
possibly damaging |
0.58 |
|
IGL00430:Lama4
|
APN |
10 |
38,921,700 (GRCm39) |
missense |
possibly damaging |
0.54 |
|
IGL01074:Lama4
|
APN |
10 |
38,974,484 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL01386:Lama4
|
APN |
10 |
38,887,060 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL01603:Lama4
|
APN |
10 |
38,941,642 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
IGL01643:Lama4
|
APN |
10 |
38,932,846 (GRCm39) |
missense |
probably benign |
|
|
IGL01655:Lama4
|
APN |
10 |
38,936,209 (GRCm39) |
missense |
probably benign |
|
|
IGL01954:Lama4
|
APN |
10 |
38,963,295 (GRCm39) |
missense |
probably benign |
0.05 |
|
IGL01984:Lama4
|
APN |
10 |
38,951,525 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL02193:Lama4
|
APN |
10 |
38,918,670 (GRCm39) |
missense |
probably benign |
|
|
IGL02290:Lama4
|
APN |
10 |
38,893,360 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02441:Lama4
|
APN |
10 |
38,937,441 (GRCm39) |
missense |
probably benign |
0.20 |
|
IGL02549:Lama4
|
APN |
10 |
38,936,200 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02797:Lama4
|
APN |
10 |
38,932,920 (GRCm39) |
missense |
probably null |
0.00 |
|
IGL02819:Lama4
|
APN |
10 |
38,902,565 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
IGL03122:Lama4
|
APN |
10 |
38,943,959 (GRCm39) |
missense |
probably benign |
|
|
IGL03184:Lama4
|
APN |
10 |
38,954,839 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03307:Lama4
|
APN |
10 |
38,893,379 (GRCm39) |
missense |
probably benign |
|
|
BB006:Lama4
|
UTSW |
10 |
38,954,843 (GRCm39) |
missense |
probably damaging |
1.00 |
|
BB016:Lama4
|
UTSW |
10 |
38,954,843 (GRCm39) |
missense |
probably damaging |
1.00 |
|
PIT4585001:Lama4
|
UTSW |
10 |
38,950,742 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0003:Lama4
|
UTSW |
10 |
38,936,218 (GRCm39) |
missense |
possibly damaging |
0.55 |
|
R0015:Lama4
|
UTSW |
10 |
38,951,432 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R0015:Lama4
|
UTSW |
10 |
38,951,432 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R0035:Lama4
|
UTSW |
10 |
38,948,734 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0141:Lama4
|
UTSW |
10 |
38,968,274 (GRCm39) |
missense |
probably benign |
0.05 |
|
R0257:Lama4
|
UTSW |
10 |
38,970,880 (GRCm39) |
splice site |
probably benign |
|
|
R0267:Lama4
|
UTSW |
10 |
38,904,635 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R0557:Lama4
|
UTSW |
10 |
38,964,393 (GRCm39) |
missense |
probably benign |
0.38 |
|
R1052:Lama4
|
UTSW |
10 |
38,968,241 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
R1248:Lama4
|
UTSW |
10 |
38,932,843 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1249:Lama4
|
UTSW |
10 |
38,951,474 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1291:Lama4
|
UTSW |
10 |
38,924,065 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1307:Lama4
|
UTSW |
10 |
38,946,028 (GRCm39) |
missense |
probably benign |
0.06 |
|
R1404:Lama4
|
UTSW |
10 |
38,937,387 (GRCm39) |
missense |
probably benign |
0.09 |
|
R1404:Lama4
|
UTSW |
10 |
38,937,387 (GRCm39) |
missense |
probably benign |
0.09 |
|
R1443:Lama4
|
UTSW |
10 |
38,949,639 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1499:Lama4
|
UTSW |
10 |
38,964,876 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R1616:Lama4
|
UTSW |
10 |
38,951,446 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1691:Lama4
|
UTSW |
10 |
38,956,559 (GRCm39) |
missense |
probably benign |
0.09 |
|
R1748:Lama4
|
UTSW |
10 |
38,941,615 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1768:Lama4
|
UTSW |
10 |
38,979,497 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R1772:Lama4
|
UTSW |
10 |
38,936,220 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1813:Lama4
|
UTSW |
10 |
38,936,182 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1813:Lama4
|
UTSW |
10 |
38,909,121 (GRCm39) |
splice site |
probably benign |
|
|
R1897:Lama4
|
UTSW |
10 |
38,936,182 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1907:Lama4
|
UTSW |
10 |
38,948,754 (GRCm39) |
missense |
probably benign |
0.13 |
|
R1943:Lama4
|
UTSW |
10 |
38,973,134 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R2041:Lama4
|
UTSW |
10 |
38,945,987 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2242:Lama4
|
UTSW |
10 |
38,902,689 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2300:Lama4
|
UTSW |
10 |
38,963,316 (GRCm39) |
missense |
probably benign |
|
|
R2326:Lama4
|
UTSW |
10 |
38,918,563 (GRCm39) |
splice site |
probably null |
|
|
R2570:Lama4
|
UTSW |
10 |
38,982,043 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2570:Lama4
|
UTSW |
10 |
38,951,354 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R2571:Lama4
|
UTSW |
10 |
38,918,671 (GRCm39) |
missense |
possibly damaging |
0.55 |
|
R2887:Lama4
|
UTSW |
10 |
38,968,250 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R2926:Lama4
|
UTSW |
10 |
38,954,828 (GRCm39) |
missense |
probably benign |
0.16 |
|
R3237:Lama4
|
UTSW |
10 |
38,973,175 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R4095:Lama4
|
UTSW |
10 |
38,973,118 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4151:Lama4
|
UTSW |
10 |
38,881,424 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4470:Lama4
|
UTSW |
10 |
38,956,492 (GRCm39) |
nonsense |
probably null |
|
|
R4812:Lama4
|
UTSW |
10 |
38,948,765 (GRCm39) |
missense |
probably benign |
|
|
R4822:Lama4
|
UTSW |
10 |
38,909,049 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4997:Lama4
|
UTSW |
10 |
38,968,262 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5468:Lama4
|
UTSW |
10 |
38,948,678 (GRCm39) |
splice site |
probably null |
|
|
R5909:Lama4
|
UTSW |
10 |
38,948,855 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5917:Lama4
|
UTSW |
10 |
38,924,028 (GRCm39) |
missense |
probably benign |
0.10 |
|
R5927:Lama4
|
UTSW |
10 |
38,948,808 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5950:Lama4
|
UTSW |
10 |
38,906,444 (GRCm39) |
missense |
probably benign |
0.03 |
|
R6051:Lama4
|
UTSW |
10 |
38,943,898 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6277:Lama4
|
UTSW |
10 |
38,982,006 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6294:Lama4
|
UTSW |
10 |
38,951,466 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6372:Lama4
|
UTSW |
10 |
38,943,948 (GRCm39) |
missense |
probably benign |
|
|
R6532:Lama4
|
UTSW |
10 |
38,924,073 (GRCm39) |
missense |
possibly damaging |
0.58 |
|
R6547:Lama4
|
UTSW |
10 |
38,949,652 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6578:Lama4
|
UTSW |
10 |
38,893,361 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6737:Lama4
|
UTSW |
10 |
38,970,907 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R6987:Lama4
|
UTSW |
10 |
38,950,275 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7040:Lama4
|
UTSW |
10 |
38,936,158 (GRCm39) |
missense |
possibly damaging |
0.69 |
|
R7139:Lama4
|
UTSW |
10 |
38,951,491 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7188:Lama4
|
UTSW |
10 |
38,841,729 (GRCm39) |
start gained |
probably benign |
|
|
R7189:Lama4
|
UTSW |
10 |
38,841,729 (GRCm39) |
start gained |
probably benign |
|
|
R7199:Lama4
|
UTSW |
10 |
38,956,536 (GRCm39) |
missense |
possibly damaging |
0.84 |
|
R7211:Lama4
|
UTSW |
10 |
38,881,491 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7262:Lama4
|
UTSW |
10 |
38,970,930 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7274:Lama4
|
UTSW |
10 |
38,968,295 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7311:Lama4
|
UTSW |
10 |
38,902,631 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7391:Lama4
|
UTSW |
10 |
38,963,383 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7399:Lama4
|
UTSW |
10 |
38,923,944 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7426:Lama4
|
UTSW |
10 |
38,921,751 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R7472:Lama4
|
UTSW |
10 |
38,963,369 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
R7635:Lama4
|
UTSW |
10 |
38,968,184 (GRCm39) |
missense |
probably benign |
|
|
R7775:Lama4
|
UTSW |
10 |
38,954,843 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7805:Lama4
|
UTSW |
10 |
38,902,747 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7885:Lama4
|
UTSW |
10 |
38,964,840 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7895:Lama4
|
UTSW |
10 |
38,964,325 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R7910:Lama4
|
UTSW |
10 |
38,946,005 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7929:Lama4
|
UTSW |
10 |
38,954,843 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7952:Lama4
|
UTSW |
10 |
38,906,486 (GRCm39) |
missense |
probably benign |
0.39 |
|
R7991:Lama4
|
UTSW |
10 |
38,921,805 (GRCm39) |
missense |
possibly damaging |
0.70 |
|
R8059:Lama4
|
UTSW |
10 |
38,842,057 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8194:Lama4
|
UTSW |
10 |
38,954,716 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8248:Lama4
|
UTSW |
10 |
38,937,375 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R8252:Lama4
|
UTSW |
10 |
38,936,142 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8265:Lama4
|
UTSW |
10 |
38,981,200 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8275:Lama4
|
UTSW |
10 |
38,948,807 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8426:Lama4
|
UTSW |
10 |
38,979,487 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8434:Lama4
|
UTSW |
10 |
38,902,703 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R8720:Lama4
|
UTSW |
10 |
38,971,079 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R8792:Lama4
|
UTSW |
10 |
38,924,048 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8836:Lama4
|
UTSW |
10 |
38,902,587 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8867:Lama4
|
UTSW |
10 |
38,923,996 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8892:Lama4
|
UTSW |
10 |
38,973,194 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8913:Lama4
|
UTSW |
10 |
38,982,039 (GRCm39) |
missense |
probably benign |
0.10 |
|
R9129:Lama4
|
UTSW |
10 |
38,932,887 (GRCm39) |
missense |
probably benign |
|
|
R9177:Lama4
|
UTSW |
10 |
38,950,688 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R9187:Lama4
|
UTSW |
10 |
38,924,124 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9193:Lama4
|
UTSW |
10 |
38,951,444 (GRCm39) |
missense |
probably benign |
0.03 |
|
R9268:Lama4
|
UTSW |
10 |
38,950,688 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R9287:Lama4
|
UTSW |
10 |
38,981,960 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9295:Lama4
|
UTSW |
10 |
38,948,747 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9303:Lama4
|
UTSW |
10 |
38,973,137 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9330:Lama4
|
UTSW |
10 |
38,954,722 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9430:Lama4
|
UTSW |
10 |
38,921,802 (GRCm39) |
missense |
probably null |
|
|
R9572:Lama4
|
UTSW |
10 |
38,959,271 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9636:Lama4
|
UTSW |
10 |
38,956,500 (GRCm39) |
missense |
possibly damaging |
0.67 |
|
R9663:Lama4
|
UTSW |
10 |
38,923,944 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R9777:Lama4
|
UTSW |
10 |
38,924,101 (GRCm39) |
missense |
probably benign |
0.00 |
|
X0067:Lama4
|
UTSW |
10 |
38,921,688 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1177:Lama4
|
UTSW |
10 |
38,881,421 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1177:Lama4
|
UTSW |
10 |
38,881,420 (GRCm39) |
nonsense |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- TGTGAAATGCAGGAGCCCAG -3'
(R):5'- GCACAGATATGGTTGTGACTTAC -3'
Sequencing Primer
(F):5'- AGGAGCCCAGACTAAGTTTGTCTC -3'
(R):5'- GACATGCGTTCACAGTTG -3'
|
| Posted On |
2016-06-15 |
Incidental Mutation