Mutagenetix > Incidental Mutation

Incidental Mutation 'R5121:Arhgap24'

393002

Institutional Source

Beutler Lab

Gene Symbol

Arhgap24

Ensembl Gene

ENSMUSG00000057315

Gene Name

Rho GTPase activating protein 24

Synonyms

0610025G21Rik

MMRRC Submission

042709-MU

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5121 (G1)

Quality Score

190

Status

Not validated

Chromosome

Chromosomal Location

102481391-102897937 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 102841335 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 10 (L10P)

Ref Sequence

ENSEMBL: ENSMUSP00000108475 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000070000] [ENSMUST00000073302] [ENSMUST00000094559] [ENSMUST00000112852] [ENSMUST00000112853] [ENSMUST00000112854]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000070000

SMART Domains

Protein: ENSMUSP00000070048
Gene: ENSMUSG00000057315

Domain	Start	End	E-Value	Type
RhoGAP	58	234	7.04e-67	SMART
low complexity region	476	487	N/A	INTRINSIC
low complexity region	520	539	N/A	INTRINSIC
coiled coil region	558	638	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000073302
AA Change: L10P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000073028
Gene: ENSMUSG00000057315
AA Change: L10P

Domain	Start	End	E-Value	Type
Blast:RhoGAP	1	38	5e-16	BLAST
RhoGAP	55	231	7.04e-67	SMART
low complexity region	473	484	N/A	INTRINSIC
low complexity region	517	536	N/A	INTRINSIC
coiled coil region	555	635	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000094559
AA Change: L103P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000092138
Gene: ENSMUSG00000057315
AA Change: L103P

Domain	Start	End	E-Value	Type
PH	18	125	5.35e-23	SMART
RhoGAP	148	324	7.04e-67	SMART
low complexity region	566	577	N/A	INTRINSIC
low complexity region	610	629	N/A	INTRINSIC
coiled coil region	648	728	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000112852
AA Change: L10P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000108473
Gene: ENSMUSG00000057315
AA Change: L10P

Domain	Start	End	E-Value	Type
Blast:RhoGAP	1	38	5e-16	BLAST
RhoGAP	55	231	7.04e-67	SMART
low complexity region	473	484	N/A	INTRINSIC
low complexity region	517	536	N/A	INTRINSIC
coiled coil region	555	635	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000112853
AA Change: L10P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000108474
Gene: ENSMUSG00000057315
AA Change: L10P

Domain	Start	End	E-Value	Type
Blast:RhoGAP	1	38	5e-16	BLAST
RhoGAP	55	231	7.04e-67	SMART
low complexity region	473	484	N/A	INTRINSIC
low complexity region	517	536	N/A	INTRINSIC
coiled coil region	555	635	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000112854
AA Change: L10P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000108475
Gene: ENSMUSG00000057315
AA Change: L10P

Domain	Start	End	E-Value	Type
Blast:RhoGAP	1	38	5e-16	BLAST
RhoGAP	55	231	7.04e-67	SMART
low complexity region	473	484	N/A	INTRINSIC
low complexity region	517	536	N/A	INTRINSIC
coiled coil region	555	635	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130222

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.1%
20x: 91.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a Rho-GTPase activating protein, which is specific for the small GTPase family member Rac. Binding of the encoded protein by filamin A targets it to sites of membrane protrusion, where it antognizes Rac. This results in suppression of lamellae formation and promotion of retraction to regulate cell polarity. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2016]

Allele List at MGI

Other mutations in this stock

Total: 101 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acvr1c	A	G	2: 58,281,650	I234T	probably damaging	Het
Adam24	A	G	8: 40,679,511	E6G	probably damaging	Het
Amz1	A	G	5: 140,744,164	D151G	probably benign	Het
Arhgap25	T	G	6: 87,532,864	N8T	probably benign	Het
Arsi	T	G	18: 60,917,439	F465V	probably damaging	Het
Atp2c1	A	G	9: 105,448,825	V293A	probably damaging	Het
Bzw2	A	G	12: 36,104,351	L340P	probably damaging	Het
Camkmt	C	T	17: 85,096,581	T77I	probably benign	Het
Camsap1	G	T	2: 25,935,550	Q1375K	probably benign	Het
Catsper2	G	T	2: 121,397,123		probably null	Het
Cd163	T	C	6: 124,317,989	C671R	probably damaging	Het
Cdk7	T	C	13: 100,717,684		probably null	Het
Cfi	C	T	3: 129,873,077	P483L	probably damaging	Het
Chn2	C	T	6: 54,218,561	L72F	possibly damaging	Het
Cntn2	C	A	1: 132,517,060	E363*	probably null	Het
Crebbp	T	C	16: 4,093,511	E999G	probably damaging	Het
Cspp1	T	A	1: 10,126,463	N900K	probably damaging	Het
Cts3	A	C	13: 61,567,595	I141M	probably benign	Het
Cwc27	A	T	13: 104,804,353	V166D	probably damaging	Het
Defb26	T	C	2: 152,508,165	E65G	possibly damaging	Het
Dnah8	A	G	17: 30,810,353	T4099A	probably benign	Het
Eml6	A	G	11: 29,744,606	F1953L	probably benign	Het
Etl4	T	A	2: 20,340,111		probably null	Het
Fbln1	A	G	15: 85,237,671	E331G	probably damaging	Het
Gabra4	G	A	5: 71,572,203	H76Y	probably benign	Het
Gcat	T	C	15: 79,035,282	V149A	probably damaging	Het
Glp2r	A	T	11: 67,722,100		probably null	Het
Gm572	T	C	4: 148,666,845		probably null	Het
Golgb1	T	C	16: 36,919,258	V2653A	probably damaging	Het
Grap2	G	A	15: 80,646,144	R155Q	possibly damaging	Het
Gspt1	T	A	16: 11,223,301	I533L	probably damaging	Het
Gypa	A	T	8: 80,496,348	Y27F	unknown	Het
Hipk4	G	A	7: 27,529,492	V456I	probably benign	Het
Homer2	A	T	7: 81,649,563	D51E	probably benign	Het
Hspa1b	A	T	17: 34,958,004	V335E	possibly damaging	Het
Ift122	A	G	6: 115,912,534	T827A	probably benign	Het
Igkv1-35	T	C	6: 70,011,135	N58S	probably benign	Het
Kat6b	A	T	14: 21,619,258	H297L	probably damaging	Het
Kirrel3	G	T	9: 35,013,305	G296W	probably damaging	Het
Klhl17	A	G	4: 156,230,625	V525A	probably benign	Het
Lrrn1	G	T	6: 107,569,207	R655S	possibly damaging	Het
Ltk	T	C	2: 119,753,227	N256D	probably damaging	Het
Mill2	G	A	7: 18,856,666	G209S	probably benign	Het
Mmp27	A	T	9: 7,581,368	H544L	probably benign	Het
Mphosph10	A	G	7: 64,389,596	S209P	probably damaging	Het
Mphosph8	A	T	14: 56,676,546	K415*	probably null	Het
Myb	T	A	10: 21,126,238	M616L	probably benign	Het
Myo15b	C	T	11: 115,886,054	R867W	probably damaging	Het
Myo18b	A	T	5: 112,874,480		probably benign	Het
Nip7	A	G	8: 107,056,957	E8G	possibly damaging	Het
Olfr1318	A	T	2: 112,156,286	M112L	possibly damaging	Het
Olfr368	T	G	2: 37,332,589	F281V	probably damaging	Het
Olfr38	T	A	6: 42,762,997	L315*	probably null	Het
Olfr677	A	G	7: 105,056,482	T79A	possibly damaging	Het
Olfr711	T	C	7: 106,972,231	I38V	probably benign	Het
Optn	T	A	2: 5,046,106	I155F	probably benign	Het
Papolb	A	T	5: 142,528,837	H350Q	probably benign	Het
Pappa2	T	A	1: 158,838,627	M1128L	probably benign	Het
Pcdhb5	T	A	18: 37,321,117	N183K	probably benign	Het
Pde12	G	T	14: 26,669,422	S44*	probably null	Het
Peg3	T	C	7: 6,710,289	K645E	probably benign	Het
Pkd1	C	T	17: 24,573,463	R1375C	probably benign	Het
Plekha5	G	A	6: 140,579,474	E21K	probably damaging	Het
Plk2	C	T	13: 110,399,424	P554L	probably benign	Het
Pnkp	C	T	7: 44,862,403	S113L	probably damaging	Het
Polg	A	T	7: 79,464,605	W203R	probably damaging	Het
Ppcdc	A	G	9: 57,421,163	V65A	possibly damaging	Het
Ppm1m	T	A	9: 106,195,805	Q353L	probably benign	Het
Ppp1r13l	G	C	7: 19,370,095	R167P	probably damaging	Het
Ppp1r9b	T	A	11: 94,996,653	V497E	probably damaging	Het
Prpf6	T	A	2: 181,636,043	H399Q	probably benign	Het
Psg25	T	A	7: 18,526,536	I146F	possibly damaging	Het
Rasgef1c	A	T	11: 49,960,429	Q116L	probably damaging	Het
Rbbp9	A	G	2: 144,550,756	V8A	possibly damaging	Het
Rfk	T	C	19: 17,399,566	F144S	probably damaging	Het
Rfwd3	A	C	8: 111,282,753		probably null	Het
Rhpn1	T	C	15: 75,709,260	I117T	probably damaging	Het
Sars2	A	T	7: 28,747,908	N244Y	probably damaging	Het
Scnn1b	A	T	7: 121,902,887	H256L	probably benign	Het
Sgcz	G	A	8: 37,539,667	T195I	probably damaging	Het
Sh3gl2	T	A	4: 85,379,257	H157Q	probably benign	Het
Spen	T	A	4: 141,476,099	Q1739L	probably benign	Het
Susd1	G	T	4: 59,379,657	S323R	possibly damaging	Het
Szt2	T	C	4: 118,385,444	E1482G	possibly damaging	Het
Tex15	A	T	8: 33,571,766	K408I	probably damaging	Het
Tex33	C	T	15: 78,386,173	E132K	probably benign	Het
Trem1	T	A	17: 48,232,836	F14L	probably null	Het
Trim26	G	T	17: 36,851,066	E126*	probably null	Het
Trpv3	T	C	11: 73,277,834		probably null	Het
Ttn	T	A	2: 76,916,491		probably null	Het
Ubap1	C	T	4: 41,379,688	L301F	probably benign	Het
Uchl1	T	C	5: 66,676,437	M12T	probably benign	Het
Vill	C	T	9: 119,070,025	T253I	possibly damaging	Het
Vmn2r107	C	T	17: 20,355,753	T115I	probably benign	Het
Vmn2r98	T	C	17: 19,053,553	S21P	probably benign	Het
Wapl	A	G	14: 34,677,162	K63E	probably benign	Het
Wnt2	T	C	6: 18,023,126	K175E	possibly damaging	Het
Zfp592	T	C	7: 81,023,561	L91P	probably damaging	Het
Zfp74	T	C	7: 29,932,507		probably null	Het
Zglp1	A	T	9: 21,062,661	I243N	probably benign	Het
Zranb1	A	G	7: 132,950,187	E215G	probably benign	Het

Other mutations in Arhgap24

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00163:Arhgap24	APN	5	102860399	missense	possibly damaging	0.94
IGL01483:Arhgap24	APN	5	102860377	missense	possibly damaging	0.91
IGL02641:Arhgap24	APN	5	102892520	missense	probably damaging	1.00
IGL03166:Arhgap24	APN	5	102875686	splice site	probably benign
bullmarket	UTSW	5	102875777	missense	probably damaging	0.99
buyers	UTSW	5	102897220	missense	probably damaging	1.00
wallstreet	UTSW	5	102552297	splice site	probably null
BB009:Arhgap24	UTSW	5	102845969	intron	probably benign
BB019:Arhgap24	UTSW	5	102845969	intron	probably benign
R0506:Arhgap24	UTSW	5	102875777	missense	probably damaging	0.99
R0606:Arhgap24	UTSW	5	102897220	missense	probably damaging	1.00
R1457:Arhgap24	UTSW	5	102664106	missense	probably damaging	0.98
R1491:Arhgap24	UTSW	5	102860332	missense	possibly damaging	0.47
R1707:Arhgap24	UTSW	5	102892087	missense	probably benign	0.40
R2112:Arhgap24	UTSW	5	102892500	missense	probably damaging	1.00
R2300:Arhgap24	UTSW	5	102860425	missense	probably damaging	1.00
R2516:Arhgap24	UTSW	5	102891910	missense	probably benign
R3803:Arhgap24	UTSW	5	102892442	missense	probably damaging	0.98
R4257:Arhgap24	UTSW	5	102664117	missense	probably benign	0.00
R4761:Arhgap24	UTSW	5	102664214	intron	probably benign
R5045:Arhgap24	UTSW	5	102891877	missense	possibly damaging	0.79
R5209:Arhgap24	UTSW	5	102892149	missense	probably benign	0.12
R5667:Arhgap24	UTSW	5	102846171	critical splice donor site	probably null
R5914:Arhgap24	UTSW	5	102552159	splice site	probably null
R6039:Arhgap24	UTSW	5	102880786	missense	probably damaging	0.98
R6039:Arhgap24	UTSW	5	102880786	missense	probably damaging	0.98
R6158:Arhgap24	UTSW	5	102892912	missense	probably benign	0.12
R6410:Arhgap24	UTSW	5	102892151	missense	probably benign	0.10
R6450:Arhgap24	UTSW	5	102897124	missense	probably benign	0.01
R6520:Arhgap24	UTSW	5	102880793	missense	probably benign	0.00
R6666:Arhgap24	UTSW	5	102552297	splice site	probably null
R7233:Arhgap24	UTSW	5	102878501	missense	probably benign	0.03
R7311:Arhgap24	UTSW	5	102892685	missense	probably damaging	1.00
R7460:Arhgap24	UTSW	5	102892346	missense	probably benign	0.36
R7483:Arhgap24	UTSW	5	102841308	missense	probably benign	0.13
R7515:Arhgap24	UTSW	5	102846016	intron	probably benign
R7667:Arhgap24	UTSW	5	102878457	missense	probably benign
R7932:Arhgap24	UTSW	5	102845969	intron	probably benign
R8227:Arhgap24	UTSW	5	102875781	missense	probably benign	0.02
R8289:Arhgap24	UTSW	5	102880826	missense	possibly damaging	0.88
R8431:Arhgap24	UTSW	5	102892598	missense	possibly damaging	0.49
R8721:Arhgap24	UTSW	5	102875699	missense	possibly damaging	0.46
R8767:Arhgap24	UTSW	5	102891874	missense	probably benign
R8954:Arhgap24	UTSW	5	102892270	missense	probably benign	0.00
R9120:Arhgap24	UTSW	5	102892150	missense	probably benign	0.05
R9306:Arhgap24	UTSW	5	102846142	missense	possibly damaging	0.91
R9687:Arhgap24	UTSW	5	102846156	missense	probably benign
Z1176:Arhgap24	UTSW	5	102875759	missense	probably damaging	0.97
Z1176:Arhgap24	UTSW	5	102880807	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TTCCTTTTAAAGCAGCAATCCC -3'
(R):5'- TTGGACATAGGAGCCCACAG -3'

Sequencing Primer
(F):5'- TCCAGTTCATTCAGTGGGAC -3'
(R):5'- CATAGGAGCCCACAGTGCTAG -3'

Posted On

2016-06-15