Mutagenetix > Incidental Mutation

Incidental Mutation 'R0446:Tmem25'

39386

Institutional Source

Beutler Lab

Gene Symbol

Tmem25

Ensembl Gene

ENSMUSG00000002032

Gene Name

transmembrane protein 25

Synonyms

0610039J01Rik

MMRRC Submission

038647-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.054) question?

Stock #

R0446 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

44793769-44799307 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 44796581 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 139 (Y139C)

Ref Sequence

ENSEMBL: ENSMUSP00000110353 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000002099] [ENSMUST00000002100] [ENSMUST00000044694] [ENSMUST00000114705] [ENSMUST00000132020] [ENSMUST00000213203] [ENSMUST00000213363] [ENSMUST00000213972] [ENSMUST00000214431] [ENSMUST00000214833]

AlphaFold

Q9DCF1

Predicted Effect

probably benign
Transcript: ENSMUST00000002099

SMART Domains

Protein: ENSMUSP00000002099
Gene: ENSMUSG00000002031

Domain	Start	End	E-Value	Type
low complexity region	3	18	N/A	INTRINSIC
low complexity region	29	52	N/A	INTRINSIC
Pfam:IFT46_B_C	60	270	6.2e-106	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000002100
AA Change: Y139C

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000002100
Gene: ENSMUSG00000002032
AA Change: Y139C

Domain	Start	End	E-Value	Type
low complexity region	5	23	N/A	INTRINSIC
Pfam:C2-set_2	26	118	2.7e-14	PFAM
SCOP:d1ie5a_	121	220	2e-6	SMART
transmembrane domain	238	260	N/A	INTRINSIC
low complexity region	327	338	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000044694

SMART Domains

Protein: ENSMUSP00000042183
Gene: ENSMUSG00000039438

Domain	Start	End	E-Value	Type
low complexity region	22	39	N/A	INTRINSIC
Pfam:TPR_11	46	112	2.1e-13	PFAM
Pfam:TPR_9	54	123	5.8e-7	PFAM
Pfam:TPR_1	82	113	2.3e-6	PFAM
Pfam:TPR_2	82	114	1.2e-5	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000114705
AA Change: Y139C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000110353
Gene: ENSMUSG00000002032
AA Change: Y139C

Domain	Start	End	E-Value	Type
low complexity region	5	23	N/A	INTRINSIC
Pfam:C2-set_2	26	118	2.2e-15	PFAM
SCOP:d1ie5a_	121	220	2e-6	SMART
transmembrane domain	238	260	N/A	INTRINSIC
low complexity region	327	338	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000132020

Predicted Effect

probably damaging
Transcript: ENSMUST00000213203
AA Change: Y139C

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Predicted Effect

probably benign
Transcript: ENSMUST00000213363

Predicted Effect

probably benign
Transcript: ENSMUST00000213972

Predicted Effect

probably benign
Transcript: ENSMUST00000214431

Predicted Effect

probably damaging
Transcript: ENSMUST00000214833
AA Change: Y139C

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000214931

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000216449

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.9%
20x: 94.6%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110051M20Rik	G	A	2: 91,304,764	T20I	possibly damaging	Het
4930435E12Rik	G	A	16: 38,828,702	T15I	probably benign	Het
4933434E20Rik	A	G	3: 90,064,459	T42A	probably benign	Het
Actr3b	T	A	5: 25,831,732	I181K	probably damaging	Het
Avl9	G	T	6: 56,736,483	R242L	probably benign	Het
B3galt4	T	C	17: 33,951,018	E82G	probably benign	Het
Bag1	G	A	4: 40,936,609	T349I	probably benign	Het
Brip1	A	T	11: 86,157,601	L305Q	probably damaging	Het
Cdipt	A	G	7: 126,978,264	T61A	probably damaging	Het
Cmya5	T	A	13: 93,093,656	R1641S	probably benign	Het
Cog7	T	C	7: 121,937,072	D515G	probably benign	Het
Cpsf4	T	A	5: 145,177,244	L171Q	probably damaging	Het
Cuzd1	A	T	7: 131,316,280		probably null	Het
Dapk1	T	A	13: 60,725,287		probably null	Het
Diaph1	A	G	18: 37,853,590	V1114A	possibly damaging	Het
Emx2	A	T	19: 59,463,916	K211*	probably null	Het
Fam160b1	G	A	19: 57,381,407	D461N	probably benign	Het
Fam170a	T	A	18: 50,280,632	C55S	possibly damaging	Het
Fbxw26	A	G	9: 109,743,720	S119P	probably benign	Het
Fryl	G	A	5: 73,097,417	T894M	possibly damaging	Het
Gad1-ps	C	A	10: 99,445,521		noncoding transcript	Het
Gm14124	A	G	2: 150,268,073	T228A	possibly damaging	Het
Gss	T	C	2: 155,567,745	E257G	probably benign	Het
Klhdc1	A	C	12: 69,283,308	S404R	probably benign	Het
Kmt2e	T	A	5: 23,497,534		probably null	Het
Krt20	G	A	11: 99,437,776	Q108*	probably null	Het
Lmnb1	T	A	18: 56,743,259	S480T	probably benign	Het
Lyst	T	A	13: 13,638,048	M1015K	probably benign	Het
Mdm1	T	G	10: 118,152,056	S290A	probably benign	Het
Mkln1	T	A	6: 31,449,504	F238I	probably damaging	Het
Mrgprb3	A	G	7: 48,643,236	V189A	probably benign	Het
Myrf	G	C	19: 10,218,162	T428S	probably benign	Het
Naip2	A	C	13: 100,161,782	I582S	probably benign	Het
Neurod6	C	T	6: 55,679,629	E8K	probably benign	Het
Nlrp12	T	C	7: 3,234,029	I747V	probably benign	Het
Notch4	C	T	17: 34,565,363	R43W	possibly damaging	Het
Obscn	A	T	11: 58,995,412		probably benign	Het
Olfr1153	T	C	2: 87,896,855	Y219H	possibly damaging	Het
Olfr1346	T	C	7: 6,475,025	V305A	probably benign	Het
Olfr480	A	T	7: 108,066,725	Y24*	probably null	Het
Olfr522	A	T	7: 140,162,471	S160T	probably damaging	Het
Olfr920	G	T	9: 38,755,818	L43F	probably damaging	Het
Olfr958	A	T	9: 39,550,451	I140N	probably damaging	Het
Orc5	C	T	5: 22,546,457	V85I	probably benign	Het
Pccb	T	C	9: 100,982,797	D468G	probably damaging	Het
Pdzd2	A	T	15: 12,375,024	V1675E	probably benign	Het
Pkd1l3	C	G	8: 109,623,649	D375E	possibly damaging	Het
Pltp	A	T	2: 164,854,400	N97K	probably damaging	Het
Polr1a	T	C	6: 71,950,664		probably null	Het
Prss42	G	A	9: 110,799,273	V162I	possibly damaging	Het
Rbfox2	A	T	15: 77,099,255	Y269N	probably damaging	Het
Rftn2	A	T	1: 55,214,195	I83K	probably damaging	Het
S1pr4	A	T	10: 81,498,989	I217N	probably damaging	Het
Slc23a2	T	C	2: 132,078,433	K184R	probably benign	Het
Slc6a19	T	C	13: 73,691,695	N156S	probably benign	Het
Svep1	C	T	4: 58,088,280	G1723D	probably damaging	Het
Tbc1d32	T	A	10: 56,192,898	H358L	possibly damaging	Het
Tigit	G	T	16: 43,662,271	N33K	probably damaging	Het
Trmt13	G	A	3: 116,582,626	T372M	probably damaging	Het
Ubr2	A	T	17: 46,983,298	M303K	probably damaging	Het
Usp34	A	G	11: 23,467,207	E2952G	probably damaging	Het
Zan	T	A	5: 137,391,658	I4851F	unknown	Het
Zfand4	C	T	6: 116,288,054	T160I	probably benign	Het

Other mutations in Tmem25

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00596:Tmem25	APN	9	44795519	unclassified	probably benign
IGL01980:Tmem25	APN	9	44798271	nonsense	probably null
IGL02000:Tmem25	APN	9	44798271	nonsense	probably null
IGL03407:Tmem25	APN	9	44796339	missense	probably damaging	1.00
R0690:Tmem25	UTSW	9	44795514	unclassified	probably benign
R0960:Tmem25	UTSW	9	44795512	critical splice acceptor site	probably null
R1204:Tmem25	UTSW	9	44795232	missense	probably benign	0.17
R1899:Tmem25	UTSW	9	44798216	splice site	probably null
R1927:Tmem25	UTSW	9	44796483	missense	possibly damaging	0.77
R2088:Tmem25	UTSW	9	44796086	missense	possibly damaging	0.94
R3027:Tmem25	UTSW	9	44798214	splice site	probably null
R6854:Tmem25	UTSW	9	44796008	missense	possibly damaging	0.46
R7305:Tmem25	UTSW	9	44795408	critical splice donor site	probably null
R7655:Tmem25	UTSW	9	44798343	missense	possibly damaging	0.82
R7656:Tmem25	UTSW	9	44798343	missense	possibly damaging	0.82
R7951:Tmem25	UTSW	9	44795493	missense	probably damaging	1.00
R7968:Tmem25	UTSW	9	44795686	missense	probably benign	0.00
R8298:Tmem25	UTSW	9	44798819	start gained	probably benign
R9177:Tmem25	UTSW	9	44798232	missense	possibly damaging	0.95
R9207:Tmem25	UTSW	9	44799179	critical splice donor site	probably null
R9274:Tmem25	UTSW	9	44795039	missense	probably benign	0.00
R9291:Tmem25	UTSW	9	44795502	missense	probably damaging	0.98
R9645:Tmem25	UTSW	9	44795218	missense

Predicted Primers

PCR Primer
(F):5'- TAGTTGCTCACCTGGAGCTGGAAG -3'
(R):5'- TGAATTGATGCTGTACCAGCAGACC -3'

Sequencing Primer
(F):5'- TAGTGACACCCACGTCATTGG -3'
(R):5'- AGCAGACCCTGCTACCTG -3'

Posted On

2013-05-23