Mutagenetix > Incidental Mutation

Incidental Mutation 'R5044:Spaca6'

394284

Institutional Source

Beutler Lab

Gene Symbol

Spaca6

Ensembl Gene

ENSMUSG00000080316

Gene Name

sperm acrosome associated 6

Synonyms

B230206P06Rik, 4930546H06Rik, Ncrna00085

MMRRC Submission

042634-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.050) question?

Stock #

R5044 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

18047420-18063271 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 18051458 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 45 (T45A)

Ref Sequence

ENSEMBL: ENSMUSP00000119658 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000139969] [ENSMUST00000150302] [ENSMUST00000172097] [ENSMUST00000228490] [ENSMUST00000226899]

AlphaFold

E9Q8Q8

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000012759

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000083462

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000083545

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133912

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137228

Predicted Effect

probably benign
Transcript: ENSMUST00000139969
AA Change: T45A

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000119658
Gene: ENSMUSG00000080316
AA Change: T45A

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Blast:IG	151	186	1e-17	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000150302

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000177859

Predicted Effect

probably benign
Transcript: ENSMUST00000172097
AA Change: T65A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000128732
Gene: ENSMUSG00000080316
AA Change: T65A

Domain	Start	End	E-Value	Type
transmembrane domain	15	37	N/A	INTRINSIC
IG	171	260	2.08e-1	SMART
transmembrane domain	310	332	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000178408

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000155293

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000196737

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000175058

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000178056

Predicted Effect

probably benign
Transcript: ENSMUST00000228490

Predicted Effect

probably benign
Transcript: ENSMUST00000226899

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.6%
20x: 93.3%

Validation Efficiency

96% (73/76)

MGI Phenotype

PHENOTYPE: Mice homozygous for a transgene insertion that inactivates this gene exhibit impaired fertilization and male infertility. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	T	A	11: 9,323,323 (GRCm39)	F3387I	possibly damaging	Het
Acacb	T	A	5: 114,304,088 (GRCm39)	S170R	probably benign	Het
Adamtsl4	A	G	3: 95,588,960 (GRCm39)		probably null	Het
Adgrv1	A	G	13: 81,637,050 (GRCm39)	C3464R	probably benign	Het
Apbb1	A	T	7: 105,214,889 (GRCm39)		probably benign	Het
Cad	A	G	5: 31,212,365 (GRCm39)	T23A	probably benign	Het
Cdca7	A	G	2: 72,313,759 (GRCm39)	R183G	probably benign	Het
Cdpf1	T	C	15: 85,693,513 (GRCm39)	T5A	probably benign	Het
Cep85	T	C	4: 133,883,490 (GRCm39)	D133G	probably damaging	Het
Chrna9	T	C	5: 66,128,359 (GRCm39)	L189P	probably damaging	Het
Clca3a1	A	C	3: 144,713,689 (GRCm39)		probably null	Het
Cntn1	G	T	15: 92,140,876 (GRCm39)	V201F	probably damaging	Het
Col4a3	A	G	1: 82,644,267 (GRCm39)	E352G	unknown	Het
Ddhd2	T	C	8: 26,242,164 (GRCm39)	Y237C	probably damaging	Het
Dnah6	A	C	6: 73,014,605 (GRCm39)	F3609V	probably benign	Het
Epha3	T	C	16: 63,422,650 (GRCm39)	K580R	possibly damaging	Het
Fam135b	T	C	15: 71,334,560 (GRCm39)	N878S	probably benign	Het
Fbn1	T	G	2: 125,171,022 (GRCm39)	T1938P	probably damaging	Het
Foxg1	T	C	12: 49,431,969 (GRCm39)	V234A	probably damaging	Het
Garin5b	T	C	7: 4,761,660 (GRCm39)	N351D	probably benign	Het
Glt1d1	A	T	5: 127,721,478 (GRCm39)	N55I	probably benign	Het
Gm17641	C	A	3: 68,776,807 (GRCm39)		probably benign	Het
Gm7665	A	G	18: 16,407,788 (GRCm39)		noncoding transcript	Het
Hgf	A	C	5: 16,819,892 (GRCm39)	N541T	probably benign	Het
Hipk2	G	A	6: 38,795,814 (GRCm39)	P152S	probably benign	Het
Jarid2	C	T	13: 45,060,041 (GRCm39)	L720F	probably damaging	Het
Kifc5b	A	G	17: 27,143,761 (GRCm39)	E511G	probably damaging	Het
Ldlr	G	A	9: 21,646,538 (GRCm39)	A235T	probably benign	Het
Lmln	A	G	16: 32,894,550 (GRCm39)	D231G	possibly damaging	Het
Lrp1	A	G	10: 127,403,364 (GRCm39)	C2070R	probably damaging	Het
Mbl1	A	G	14: 40,880,681 (GRCm39)	T190A	possibly damaging	Het
Mpdz	A	T	4: 81,299,934 (GRCm39)	S355T	probably benign	Het
Muc19	C	T	15: 91,772,332 (GRCm39)		noncoding transcript	Het
Mycbp2	A	C	14: 103,376,671 (GRCm39)		probably null	Het
Naa20	T	C	2: 145,757,762 (GRCm39)	S164P	probably damaging	Het
Nme4	A	T	17: 26,312,807 (GRCm39)		probably benign	Het
Npas2	A	T	1: 39,386,587 (GRCm39)	R619*	probably null	Het
Nudt19	G	A	7: 35,255,171 (GRCm39)	T20I	possibly damaging	Het
Or4c119	T	A	2: 88,987,283 (GRCm39)	K79*	probably null	Het
Or5b97	A	G	19: 12,878,365 (GRCm39)	Y260H	probably damaging	Het
Pitpnc1	A	G	11: 107,187,054 (GRCm39)	Y90H	possibly damaging	Het
Rcor2	A	G	19: 7,247,150 (GRCm39)	T6A	probably benign	Het
Rif1	T	A	2: 51,999,940 (GRCm39)	S1131R	probably damaging	Het
Rtkn	T	A	6: 83,127,972 (GRCm39)	D377E	probably benign	Het
Rtn4rl2	T	A	2: 84,702,846 (GRCm39)	N242I	probably damaging	Het
Sbno2	G	A	10: 79,898,022 (GRCm39)	L719F	probably benign	Het
Scn11a	G	T	9: 119,648,897 (GRCm39)	D55E	probably damaging	Het
Setd1b	T	A	5: 123,289,929 (GRCm39)	I632N	unknown	Het
Srpk2	A	T	5: 23,729,390 (GRCm39)	D416E	possibly damaging	Het
Sspo	A	T	6: 48,443,889 (GRCm39)		probably null	Het
Sycp1	A	T	3: 102,752,370 (GRCm39)	I804N	probably benign	Het
Tdp2	G	A	13: 25,015,809 (GRCm39)	R32Q	probably benign	Het
Tgfbr3	A	G	5: 107,284,795 (GRCm39)	V618A	possibly damaging	Het
Tmc3	C	T	7: 83,258,326 (GRCm39)	P439S	probably benign	Het
Tnxb	A	T	17: 34,936,457 (GRCm39)	D2740V	probably damaging	Het
Tspyl4	A	G	10: 34,173,933 (GRCm39)	T142A	probably benign	Het
Ttn	T	C	2: 76,710,785 (GRCm39)		probably benign	Het
Tubgcp4	T	C	2: 121,004,061 (GRCm39)	L34P	probably damaging	Het
Tubgcp6	G	T	15: 88,983,748 (GRCm39)		probably benign	Het
Unc79	T	A	12: 103,078,962 (GRCm39)	V1690E	probably benign	Het
Vps4b	T	C	1: 106,724,148 (GRCm39)		probably null	Het
Wtap	A	G	17: 13,186,525 (GRCm39)	S341P	possibly damaging	Het
Wwc1	T	C	11: 35,774,172 (GRCm39)	T363A	probably benign	Het
Zbtb8a	G	A	4: 129,254,293 (GRCm39)	T67M	probably damaging	Het
Zfp865	T	C	7: 5,037,668 (GRCm39)		probably benign	Het

Other mutations in Spaca6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01433:Spaca6	APN	17	18,051,429 (GRCm39)	missense	probably benign	0.41
IGL02630:Spaca6	APN	17	18,051,351 (GRCm39)	missense	probably damaging	1.00
IGL03010:Spaca6	APN	17	18,058,667 (GRCm39)	missense	probably benign	0.01
IGL03352:Spaca6	APN	17	18,058,401 (GRCm39)	missense	probably damaging	1.00
R0021:Spaca6	UTSW	17	18,058,498 (GRCm39)	nonsense	probably null
R0964:Spaca6	UTSW	17	18,058,653 (GRCm39)	missense	possibly damaging	0.46
R1941:Spaca6	UTSW	17	18,058,692 (GRCm39)	missense	probably damaging	0.99
R1941:Spaca6	UTSW	17	18,058,664 (GRCm39)	missense	probably benign	0.05
R2197:Spaca6	UTSW	17	18,056,416 (GRCm39)	critical splice donor site	probably null
R2235:Spaca6	UTSW	17	18,058,507 (GRCm39)	critical splice donor site	probably null
R4602:Spaca6	UTSW	17	18,051,387 (GRCm39)	missense	probably damaging	0.99
R4645:Spaca6	UTSW	17	18,056,307 (GRCm39)	intron	probably benign
R4672:Spaca6	UTSW	17	18,057,005 (GRCm39)	nonsense	probably null
R5212:Spaca6	UTSW	17	18,058,656 (GRCm39)	missense	probably benign	0.01
R5222:Spaca6	UTSW	17	18,058,367 (GRCm39)	missense	probably benign	0.02
R5528:Spaca6	UTSW	17	18,051,344 (GRCm39)	missense	probably benign
R5854:Spaca6	UTSW	17	18,051,509 (GRCm39)	nonsense	probably null
R6029:Spaca6	UTSW	17	18,051,458 (GRCm39)	missense	probably benign	0.00
R7041:Spaca6	UTSW	17	18,056,358 (GRCm39)	missense	probably benign	0.14
R7268:Spaca6	UTSW	17	18,052,369 (GRCm39)	missense	probably benign	0.09
R8281:Spaca6	UTSW	17	18,052,321 (GRCm39)	missense	possibly damaging	0.78
R8840:Spaca6	UTSW	17	18,051,365 (GRCm39)	missense	possibly damaging	0.59
R8926:Spaca6	UTSW	17	18,058,790 (GRCm39)	critical splice donor site	probably null
R8965:Spaca6	UTSW	17	18,058,718 (GRCm39)	missense	probably damaging	0.98
R9404:Spaca6	UTSW	17	18,057,800 (GRCm39)	missense	probably damaging	1.00
R9651:Spaca6	UTSW	17	18,057,829 (GRCm39)	missense	probably benign	0.14
R9713:Spaca6	UTSW	17	18,058,498 (GRCm39)	nonsense	probably null
Z1177:Spaca6	UTSW	17	18,051,314 (GRCm39)	missense	probably benign	0.18

Predicted Primers

PCR Primer
(F):5'- TATCTTCTCCTCAGACCCGGA -3'
(R):5'- GTCTCCACCCCACTCTGGAC -3'

Sequencing Primer
(F):5'- ACCCGGAGACCCTCTGTTATG -3'
(R):5'- ACCCCACTCTGGACCTGTTTC -3'

Posted On

2016-06-15