Mutagenetix > Incidental Mutation

Incidental Mutation 'R0448:Csnk1g1'

39456

Institutional Source

Beutler Lab

Gene Symbol

Csnk1g1

Ensembl Gene

ENSMUSG00000032384

Gene Name

casein kinase 1, gamma 1

Synonyms

9130020E21Rik

MMRRC Submission

038648-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.178) question?

Stock #

R0448 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

65816235-65952297 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 65888230 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Leucine at position 90 (F90L)

Ref Sequence

ENSEMBL: ENSMUSP00000145887 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034949] [ENSMUST00000117849] [ENSMUST00000130798] [ENSMUST00000205379] [ENSMUST00000206048] [ENSMUST00000206528] [ENSMUST00000206594] [ENSMUST00000207167] [ENSMUST00000208011]

AlphaFold

Q8BTH8

Predicted Effect

possibly damaging
Transcript: ENSMUST00000034949
AA Change: F90L

PolyPhen 2 Score 0.749 (Sensitivity: 0.85; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000034949
Gene: ENSMUSG00000032384
AA Change: F90L

Domain	Start	End	E-Value	Type
Pfam:Pkinase	44	302	2.5e-27	PFAM
Pfam:Pkinase_Tyr	44	308	1.5e-14	PFAM
Pfam:CK1gamma_C	331	429	2.8e-35	PFAM
low complexity region	434	440	N/A	INTRINSIC
low complexity region	442	453	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000117849
AA Change: F90L

PolyPhen 2 Score 0.360 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000113160
Gene: ENSMUSG00000032384
AA Change: F90L

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	44	309	2.3e-14	PFAM
Pfam:Pkinase	44	313	1.5e-35	PFAM
Pfam:CK1gamma_C	331	392	4e-20	PFAM
low complexity region	397	403	N/A	INTRINSIC
low complexity region	414	424	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000130798
AA Change: F90L

PolyPhen 2 Score 0.582 (Sensitivity: 0.88; Specificity: 0.91)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146069

Predicted Effect

possibly damaging
Transcript: ENSMUST00000205379
AA Change: F90L

PolyPhen 2 Score 0.593 (Sensitivity: 0.87; Specificity: 0.91)

Predicted Effect

possibly damaging
Transcript: ENSMUST00000206048
AA Change: F90L

PolyPhen 2 Score 0.915 (Sensitivity: 0.81; Specificity: 0.94)

Predicted Effect

possibly damaging
Transcript: ENSMUST00000206528
AA Change: F90L

PolyPhen 2 Score 0.582 (Sensitivity: 0.88; Specificity: 0.91)

Predicted Effect

possibly damaging
Transcript: ENSMUST00000206594
AA Change: F90L

PolyPhen 2 Score 0.749 (Sensitivity: 0.85; Specificity: 0.92)

Predicted Effect

probably benign
Transcript: ENSMUST00000207167
AA Change: V76A

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

Predicted Effect

probably benign
Transcript: ENSMUST00000208011

Meta Mutation Damage Score

0.1918

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.3%
20x: 93.1%

Validation Efficiency

100% (74/74)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the casein kinase I gene family. This family is comprised of serine/threonine kinases that phosphorylate acidic proteins such as caseins. The encoded kinase plays a role in cell cycle checkpoint arrest in response to stalled replication forks by phosphorylating Claspin. A mutation in this gene may be associated with non-syndromic early-onset epilepsy (NSEOE). [provided by RefSeq, Jul 2016]

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc5	G	A	16: 20,218,687 (GRCm39)	R232C	probably damaging	Het
Adam9	A	G	8: 25,454,926 (GRCm39)	S732P	probably damaging	Het
Add2	G	A	6: 86,069,901 (GRCm39)	V140I	probably benign	Het
Ahi1	G	A	10: 20,847,974 (GRCm39)	G461S	probably damaging	Het
Aoc1l2	A	T	6: 48,909,991 (GRCm39)	S643C	probably damaging	Het
Arhgef7	A	G	8: 11,869,659 (GRCm39)	T432A	possibly damaging	Het
Arsi	T	C	18: 61,050,374 (GRCm39)	I419T	probably damaging	Het
Brca1	G	A	11: 101,399,047 (GRCm39)	P1515L	possibly damaging	Het
Brcc3	T	A	X: 74,493,647 (GRCm39)	L222*	probably null	Het
Brpf3	A	T	17: 29,025,010 (GRCm39)	T28S	probably benign	Het
Cdc20b	T	A	13: 113,215,191 (GRCm39)	V253E	probably damaging	Het
Cnot6l	T	A	5: 96,227,905 (GRCm39)	S443C	probably benign	Het
Copg1	G	A	6: 87,881,908 (GRCm39)	A587T	probably benign	Het
Crebrf	A	G	17: 26,962,076 (GRCm39)	D391G	probably benign	Het
Crocc	A	T	4: 140,769,502 (GRCm39)	D283E	probably damaging	Het
Cryga	T	C	1: 65,142,318 (GRCm39)	N25S	probably benign	Het
Cyp2j6	A	G	4: 96,433,965 (GRCm39)	V115A	probably benign	Het
Cyp3a11	T	C	5: 145,799,204 (GRCm39)	I328V	probably benign	Het
Dchs1	C	A	7: 105,415,134 (GRCm39)	E683D	probably benign	Het
Dnah9	T	C	11: 65,809,539 (GRCm39)		probably benign	Het
Dqx1	T	C	6: 83,037,326 (GRCm39)	S330P	probably damaging	Het
Epg5	A	G	18: 78,066,580 (GRCm39)	Y2160C	probably damaging	Het
Ercc5	T	C	1: 44,213,100 (GRCm39)	L742P	probably damaging	Het
Fcgbpl1	T	C	7: 27,839,660 (GRCm39)	I491T	probably benign	Het
Flt1	C	T	5: 147,503,204 (GRCm39)		probably benign	Het
Grip2	A	G	6: 91,756,194 (GRCm39)	S498P	probably damaging	Het
H2-T22	A	G	17: 36,353,278 (GRCm39)	L14P	possibly damaging	Het
Hephl1	C	T	9: 14,988,222 (GRCm39)	G629S	probably damaging	Het
Hsdl2	T	A	4: 59,606,523 (GRCm39)	M162K	unknown	Het
Kcnh8	C	A	17: 53,284,648 (GRCm39)		probably null	Het
Krt76	T	C	15: 101,799,082 (GRCm39)	Q201R	probably damaging	Het
Lrpprc	A	T	17: 85,078,322 (GRCm39)	Y319N	probably benign	Het
Lrrk2	T	G	15: 91,593,508 (GRCm39)	I489R	probably damaging	Het
Mboat1	G	T	13: 30,386,393 (GRCm39)	D136Y	probably damaging	Het
Mcmdc2	T	C	1: 10,010,767 (GRCm39)	*682Q	probably null	Het
Msx2	C	A	13: 53,622,431 (GRCm39)	R193L	probably damaging	Het
Nfatc4	T	G	14: 56,069,111 (GRCm39)	D625E	possibly damaging	Het
Nup153	T	C	13: 46,870,657 (GRCm39)	E86G	probably benign	Het
Or2g7	G	T	17: 38,378,563 (GRCm39)	R167L	probably benign	Het
Or4k45	T	A	2: 111,395,559 (GRCm39)	I77F	probably benign	Het
Pard3b	T	C	1: 62,205,628 (GRCm39)	L474P	probably damaging	Het
Pate11	T	A	9: 36,388,412 (GRCm39)	M79K	probably benign	Het
Pggt1b	A	T	18: 46,396,039 (GRCm39)		probably benign	Het
Pik3r2	A	G	8: 71,224,688 (GRCm39)		probably benign	Het
Prr14	A	G	7: 127,073,898 (GRCm39)		probably benign	Het
Rcbtb2	T	C	14: 73,415,869 (GRCm39)		probably benign	Het
Rufy2	G	A	10: 62,840,515 (GRCm39)	D429N	probably benign	Het
S1pr5	T	A	9: 21,155,503 (GRCm39)	T308S	probably damaging	Het
Sephs1	A	G	2: 4,904,371 (GRCm39)	T250A	probably benign	Het
Serpina12	A	G	12: 104,004,354 (GRCm39)	S93P	probably benign	Het
Serpinb1b	T	G	13: 33,273,675 (GRCm39)	H123Q	probably benign	Het
Sftpc	C	T	14: 70,760,120 (GRCm39)	V46I	probably benign	Het
Skint8	T	A	4: 111,794,087 (GRCm39)	V159D	probably damaging	Het
Slc25a11	T	C	11: 70,536,405 (GRCm39)	N134S	probably benign	Het
Slc25a24	T	C	3: 109,064,332 (GRCm39)		probably benign	Het
Sorl1	C	G	9: 41,915,384 (GRCm39)	V1282L	probably damaging	Het
Sptan1	T	A	2: 29,916,822 (GRCm39)	I2170N	probably damaging	Het
Syne4	A	G	7: 30,014,345 (GRCm39)		probably benign	Het
Tcam1	G	A	11: 106,174,904 (GRCm39)	E120K	probably benign	Het
Tg	C	A	15: 66,636,291 (GRCm39)	P626Q	probably damaging	Het
Thoc6	T	A	17: 23,888,550 (GRCm39)	D196V	probably damaging	Het
Tpi1	A	G	6: 124,791,066 (GRCm39)	F57S	probably damaging	Het
Tril	A	G	6: 53,794,793 (GRCm39)	*810Q	probably null	Het
Trrap	T	A	5: 144,776,377 (GRCm39)	V2972D	possibly damaging	Het
Ttn	A	T	2: 76,591,624 (GRCm39)	V12688E	probably damaging	Het
Ttn	T	C	2: 76,551,283 (GRCm39)	M31370V	probably damaging	Het
Txndc11	A	G	16: 10,909,625 (GRCm39)	F307S	probably damaging	Het
Vmn1r40	C	T	6: 89,691,642 (GRCm39)	S153L	probably benign	Het
Vmn2r95	A	G	17: 18,672,005 (GRCm39)	T581A	possibly damaging	Het
Wdtc1	A	G	4: 133,024,811 (GRCm39)	F462S	probably damaging	Het
Zfp101	A	G	17: 33,601,295 (GRCm39)	S154P	possibly damaging	Het
Zmym6	A	G	4: 127,002,487 (GRCm39)	N481D	probably benign	Het

Other mutations in Csnk1g1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00672:Csnk1g1	APN	9	65,915,028 (GRCm39)	missense	probably damaging	1.00
IGL02073:Csnk1g1	APN	9	65,909,533 (GRCm39)	missense	probably damaging	1.00
IGL02452:Csnk1g1	APN	9	65,915,067 (GRCm39)	missense	probably damaging	1.00
R0482:Csnk1g1	UTSW	9	65,917,751 (GRCm39)	missense	probably damaging	1.00
R0702:Csnk1g1	UTSW	9	65,917,775 (GRCm39)	missense	probably damaging	1.00
R0726:Csnk1g1	UTSW	9	65,939,637 (GRCm39)	splice site	probably benign
R1736:Csnk1g1	UTSW	9	65,927,197 (GRCm39)	splice site	probably null
R1815:Csnk1g1	UTSW	9	65,939,606 (GRCm39)	missense	probably damaging	1.00
R2063:Csnk1g1	UTSW	9	65,909,512 (GRCm39)	missense	probably damaging	1.00
R4366:Csnk1g1	UTSW	9	65,927,135 (GRCm39)	missense	probably benign	0.02
R4382:Csnk1g1	UTSW	9	65,927,190 (GRCm39)	missense	probably damaging	1.00
R4384:Csnk1g1	UTSW	9	65,927,190 (GRCm39)	missense	probably damaging	1.00
R4385:Csnk1g1	UTSW	9	65,927,190 (GRCm39)	missense	probably damaging	1.00
R6783:Csnk1g1	UTSW	9	65,880,794 (GRCm39)	missense	probably damaging	1.00
R7877:Csnk1g1	UTSW	9	65,906,830 (GRCm39)	critical splice donor site	probably null
R8430:Csnk1g1	UTSW	9	65,906,803 (GRCm39)	missense	probably damaging	1.00
R8477:Csnk1g1	UTSW	9	65,909,555 (GRCm39)	missense	probably damaging	1.00
R8726:Csnk1g1	UTSW	9	65,909,553 (GRCm39)	missense	probably damaging	1.00
R8895:Csnk1g1	UTSW	9	65,915,109 (GRCm39)	critical splice donor site	probably null
R9022:Csnk1g1	UTSW	9	65,917,854 (GRCm39)	critical splice donor site	probably null
R9033:Csnk1g1	UTSW	9	65,915,070 (GRCm39)	missense	probably damaging	1.00
Z1177:Csnk1g1	UTSW	9	65,920,032 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- TGTAAGAGTGTTTCATGCCAAGAGAGC -3'
(R):5'- GGCCATGTTTATAACCCACCCAGTAG -3'

Sequencing Primer
(F):5'- GCTGTGGTGAGAACACACTATC -3'
(R):5'- GTTTATAACCCACCCAGTAGACAGG -3'

Posted On

2013-05-23