Incidental Mutation 'R4700:Slc5a9'
ID 394786
Institutional Source Beutler Lab
Gene Symbol Slc5a9
Ensembl Gene ENSMUSG00000028544
Gene Name solute carrier family 5 (sodium/glucose cotransporter), member 9
Synonyms SGLT4
MMRRC Submission 041948-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.081) question?
Stock # R4700 (G1)
Quality Score 225
Status Validated
Chromosome 4
Chromosomal Location 111732571-111759993 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 111748134 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Leucine to Glutamine at position 226 (L226Q)
Ref Sequence ENSEMBL: ENSMUSP00000099782 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000102719] [ENSMUST00000102720] [ENSMUST00000102721] [ENSMUST00000128340]
AlphaFold Q8VDT1
Predicted Effect possibly damaging
Transcript: ENSMUST00000102719
AA Change: L226Q

PolyPhen 2 Score 0.645 (Sensitivity: 0.87; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000099780
Gene: ENSMUSG00000028544
AA Change: L226Q

DomainStartEndE-ValueType
low complexity region 34 44 N/A INTRINSIC
Pfam:SSF 63 492 2.3e-152 PFAM
transmembrane domain 526 548 N/A INTRINSIC
transmembrane domain 665 684 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000102720
AA Change: L226Q

PolyPhen 2 Score 0.645 (Sensitivity: 0.87; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000099781
Gene: ENSMUSG00000028544
AA Change: L226Q

DomainStartEndE-ValueType
low complexity region 34 44 N/A INTRINSIC
Pfam:SSF 63 492 2.3e-152 PFAM
transmembrane domain 526 548 N/A INTRINSIC
transmembrane domain 665 684 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000102721
AA Change: L226Q

PolyPhen 2 Score 0.645 (Sensitivity: 0.87; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000099782
Gene: ENSMUSG00000028544
AA Change: L226Q

DomainStartEndE-ValueType
low complexity region 34 44 N/A INTRINSIC
Pfam:SSF 63 492 2.3e-152 PFAM
transmembrane domain 526 548 N/A INTRINSIC
transmembrane domain 665 684 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000128340
AA Change: L141Q

PolyPhen 2 Score 0.402 (Sensitivity: 0.89; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000120546
Gene: ENSMUSG00000028544
AA Change: L141Q

DomainStartEndE-ValueType
Pfam:SSF 23 255 9.3e-70 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000131772
Predicted Effect noncoding transcript
Transcript: ENSMUST00000149922
Meta Mutation Damage Score 0.2344 question?
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.4%
  • 10x: 96.8%
  • 20x: 94.0%
Validation Efficiency 97% (127/131)
Allele List at MGI
Other mutations in this stock
Total: 112 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A530084C06Rik A G 13: 31,742,795 (GRCm39) probably benign Het
Abca13 A G 11: 9,242,306 (GRCm39) T1390A possibly damaging Het
Abca14 T A 7: 119,911,928 (GRCm39) probably null Het
Abca8a A C 11: 109,961,308 (GRCm39) V538G probably damaging Het
Acy1 C T 9: 106,310,782 (GRCm39) G329R probably benign Het
Adamts17 T C 7: 66,691,636 (GRCm39) C607R probably damaging Het
Adamts20 A T 15: 94,292,503 (GRCm39) C202* probably null Het
Adcy5 A G 16: 35,099,586 (GRCm39) N712S possibly damaging Het
Ahnak A G 19: 8,982,045 (GRCm39) K1110E probably benign Het
Anks6 T A 4: 47,033,127 (GRCm39) H578L possibly damaging Het
Appl1 C A 14: 26,647,928 (GRCm39) L626F probably benign Het
Arl1 A G 10: 88,566,499 (GRCm39) probably benign Het
Atf4 T A 15: 80,141,618 (GRCm39) I336K probably damaging Het
Atp7b A T 8: 22,490,137 (GRCm39) S1044T probably benign Het
Carm1 A G 9: 21,498,480 (GRCm39) N466S probably benign Het
Cbl A G 9: 44,084,677 (GRCm39) S153P probably damaging Het
Ccdc159 A G 9: 21,839,027 (GRCm39) probably null Het
Cd109 CATTTATTTATTTATTTATTTATTTATTTATTTAT CATTTATTTATTTATTTATTTATTTATTTATTTATTTAT 9: 78,619,782 (GRCm39) probably benign Het
Cdc7 T C 5: 107,121,707 (GRCm39) F207L probably benign Het
Celsr2 T C 3: 108,304,547 (GRCm39) R2271G probably benign Het
Cep162 T C 9: 87,088,915 (GRCm39) Q989R probably damaging Het
Cep89 A G 7: 35,137,862 (GRCm39) T749A probably benign Het
Clcn5 T C X: 7,032,591 (GRCm39) probably null Het
Clu A T 14: 66,217,313 (GRCm39) Y382F probably benign Het
Cnih4 A G 1: 180,993,808 (GRCm39) probably benign Het
Crb1 A G 1: 139,126,509 (GRCm39) L1340P probably damaging Het
Ddx4 T C 13: 112,750,269 (GRCm39) T421A probably damaging Het
Dennd5a T C 7: 109,520,405 (GRCm39) E484G probably benign Het
Dsg4 G T 18: 20,589,965 (GRCm39) V372L possibly damaging Het
Dyrk2 T C 10: 118,704,191 (GRCm39) D21G probably benign Het
E2f1 C G 2: 154,405,942 (GRCm39) G144R probably damaging Het
Epb41l4a A T 18: 33,935,560 (GRCm39) probably null Het
F10 G T 8: 13,089,621 (GRCm39) V67F possibly damaging Het
Fat3 A G 9: 15,942,469 (GRCm39) I1301T probably damaging Het
Filip1l A G 16: 57,391,058 (GRCm39) T549A probably benign Het
Flt4 C A 11: 49,517,271 (GRCm39) probably benign Het
Fndc1 G A 17: 7,990,312 (GRCm39) T1128I unknown Het
Fos T C 12: 85,522,936 (GRCm39) S283P probably benign Het
Fryl T C 5: 73,222,881 (GRCm39) Y1900C possibly damaging Het
Fsip2 C A 2: 82,817,373 (GRCm39) Q4369K probably benign Het
Gad2 A T 2: 22,563,982 (GRCm39) H395L probably damaging Het
Grm2 T A 9: 106,531,130 (GRCm39) I120F probably benign Het
Hjurp GT GTT 1: 88,194,246 (GRCm39) probably null Het
Igsf10 A T 3: 59,227,751 (GRCm39) I1974N probably damaging Het
Il23r T C 6: 67,450,834 (GRCm39) N215S probably damaging Het
Jph1 T A 1: 17,161,928 (GRCm39) M245L possibly damaging Het
Loxl4 G A 19: 42,596,052 (GRCm39) H147Y probably benign Het
Lsg1 A G 16: 30,384,267 (GRCm39) I521T probably damaging Het
Ltc4s C T 11: 50,127,908 (GRCm39) G83R probably damaging Het
Map2 A G 1: 66,449,796 (GRCm39) E173G probably damaging Het
Med29 T A 7: 28,086,352 (GRCm39) D152V possibly damaging Het
Megf8 A G 7: 25,062,940 (GRCm39) D2432G probably damaging Het
Mrpl38 G A 11: 116,025,978 (GRCm39) probably benign Het
Myh7 A G 14: 55,225,778 (GRCm39) I521T possibly damaging Het
Mylk G T 16: 34,742,805 (GRCm39) V1106L probably benign Het
Myo15b A T 11: 115,752,761 (GRCm39) D753V possibly damaging Het
Myo1g T C 11: 6,466,785 (GRCm39) probably null Het
Myrfl A G 10: 116,613,247 (GRCm39) probably null Het
Naip5 A G 13: 100,359,922 (GRCm39) V438A possibly damaging Het
Nav3 A G 10: 109,600,796 (GRCm39) V1277A probably benign Het
Nek10 T A 14: 14,842,841 (GRCm38) V182E possibly damaging Het
Ngly1 T C 14: 16,281,809 (GRCm38) V355A probably benign Het
Nol6 T C 4: 41,118,944 (GRCm39) E683G possibly damaging Het
Obsl1 A T 1: 75,480,085 (GRCm39) V487E probably damaging Het
Oc90 T A 15: 65,753,354 (GRCm39) R322W possibly damaging Het
Or1q1 C A 2: 36,887,515 (GRCm39) A231D probably benign Het
Or4f60 A G 2: 111,902,097 (GRCm39) V277A possibly damaging Het
Or52e4 A T 7: 104,705,483 (GRCm39) H10L possibly damaging Het
Or8b4 A G 9: 37,830,217 (GRCm39) E93G possibly damaging Het
Osbp2 T C 11: 3,662,160 (GRCm39) H231R probably damaging Het
Pate6 A T 9: 35,701,021 (GRCm39) C22S probably damaging Het
Pdzph1 T C 17: 59,281,541 (GRCm39) H247R probably damaging Het
Pidd1 T C 7: 141,022,162 (GRCm39) N209S probably damaging Het
Pknox1 C T 17: 31,822,286 (GRCm39) A351V probably damaging Het
Plxnd1 C A 6: 115,935,576 (GRCm39) V1737F probably damaging Het
Prkdc A T 16: 15,519,976 (GRCm39) K1138M probably damaging Het
Rad54l2 T C 9: 106,631,224 (GRCm39) D21G possibly damaging Het
Recql4 C T 15: 76,592,785 (GRCm39) C302Y probably damaging Het
Scgb2b6 T C 7: 31,318,908 (GRCm39) noncoding transcript Het
Sdc1 A G 12: 8,840,541 (GRCm39) E106G possibly damaging Het
Slc10a5 T G 3: 10,400,360 (GRCm39) Q100P probably damaging Het
Slc10a5 C A 3: 10,400,359 (GRCm39) Q100H probably damaging Het
Slfn1 T C 11: 83,012,475 (GRCm39) V197A probably benign Het
Spire1 T C 18: 67,645,935 (GRCm39) M244V probably benign Het
St3gal3 C T 4: 117,817,232 (GRCm39) V141I probably benign Het
St6galnac4 G T 2: 32,477,172 (GRCm39) probably benign Het
Svep1 T C 4: 58,097,323 (GRCm39) K1407E possibly damaging Het
Tbc1d32 A G 10: 56,100,745 (GRCm39) C78R probably damaging Het
Tcstv5 T C 13: 120,411,378 (GRCm39) Y76C probably benign Het
Tln2 A G 9: 67,253,809 (GRCm39) V754A probably benign Het
Tmeff1 A T 4: 48,636,869 (GRCm39) Y189F possibly damaging Het
Tmem131l C T 3: 83,806,519 (GRCm39) A1433T probably benign Het
Tnfrsf8 T C 4: 145,029,692 (GRCm39) Y36C probably damaging Het
Trp53i11 G T 2: 93,030,245 (GRCm39) R184L probably damaging Het
Trpv1 A T 11: 73,142,110 (GRCm39) M214L possibly damaging Het
Tsnax T A 8: 125,755,533 (GRCm39) S132T probably benign Het
Ttc28 T C 5: 111,424,909 (GRCm39) L1547P probably damaging Het
Ttc3 A G 16: 94,240,100 (GRCm39) probably null Het
Tubal3 T A 13: 3,983,514 (GRCm39) D431E probably damaging Het
Ugt2b36 A T 5: 87,240,301 (GRCm39) probably null Het
Vmn1r23 A T 6: 57,903,190 (GRCm39) I196K probably benign Het
Vmn1r55 A C 7: 5,149,586 (GRCm39) L279R probably damaging Het
Vmn1r55 G T 7: 5,149,587 (GRCm39) L279M probably damaging Het
Vmn2r89 G A 14: 51,694,942 (GRCm39) G474E probably damaging Het
Vps26b T C 9: 26,926,511 (GRCm39) K163E probably damaging Het
Zfp142 A G 1: 74,609,431 (GRCm39) F1352L probably damaging Het
Zfp422 C T 6: 116,603,844 (GRCm39) E52K possibly damaging Het
Zfp423 T A 8: 88,508,338 (GRCm39) probably null Het
Zfp493 T C 13: 67,934,736 (GRCm39) F230L probably damaging Het
Zfp760 T C 17: 21,941,388 (GRCm39) C188R probably benign Het
Zfyve28 G T 5: 34,375,189 (GRCm39) T275K probably damaging Het
Znhit3 T C 11: 84,807,155 (GRCm39) N5D probably benign Het
Other mutations in Slc5a9
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00326:Slc5a9 APN 4 111,755,766 (GRCm39) missense probably damaging 0.99
IGL00837:Slc5a9 APN 4 111,750,887 (GRCm39) intron probably benign
IGL01556:Slc5a9 APN 4 111,755,833 (GRCm39) missense probably benign 0.00
IGL01807:Slc5a9 APN 4 111,734,737 (GRCm39) makesense probably null
IGL01816:Slc5a9 APN 4 111,755,811 (GRCm39) missense probably damaging 1.00
IGL02066:Slc5a9 APN 4 111,744,719 (GRCm39) missense probably damaging 1.00
IGL02370:Slc5a9 APN 4 111,734,826 (GRCm39) missense probably benign 0.01
IGL02491:Slc5a9 APN 4 111,753,549 (GRCm39) missense probably damaging 0.99
IGL02971:Slc5a9 APN 4 111,747,497 (GRCm39) missense possibly damaging 0.58
IGL03008:Slc5a9 APN 4 111,748,138 (GRCm39) missense probably benign 0.14
R0365:Slc5a9 UTSW 4 111,749,033 (GRCm39) nonsense probably null
R0559:Slc5a9 UTSW 4 111,742,779 (GRCm39) missense probably benign 0.02
R0659:Slc5a9 UTSW 4 111,741,068 (GRCm39) missense possibly damaging 0.82
R1454:Slc5a9 UTSW 4 111,741,161 (GRCm39) missense probably benign 0.04
R2006:Slc5a9 UTSW 4 111,737,423 (GRCm39) missense probably benign
R2014:Slc5a9 UTSW 4 111,753,546 (GRCm39) missense possibly damaging 0.76
R2024:Slc5a9 UTSW 4 111,747,728 (GRCm39) missense probably damaging 1.00
R2076:Slc5a9 UTSW 4 111,742,770 (GRCm39) missense possibly damaging 0.76
R2152:Slc5a9 UTSW 4 111,750,420 (GRCm39) missense possibly damaging 0.76
R3156:Slc5a9 UTSW 4 111,747,421 (GRCm39) missense possibly damaging 0.80
R4566:Slc5a9 UTSW 4 111,748,941 (GRCm39) splice site probably null
R4568:Slc5a9 UTSW 4 111,748,941 (GRCm39) splice site probably null
R4579:Slc5a9 UTSW 4 111,750,384 (GRCm39) missense probably damaging 1.00
R4656:Slc5a9 UTSW 4 111,748,941 (GRCm39) splice site probably null
R4657:Slc5a9 UTSW 4 111,748,941 (GRCm39) splice site probably null
R4889:Slc5a9 UTSW 4 111,748,941 (GRCm39) splice site probably null
R4891:Slc5a9 UTSW 4 111,748,941 (GRCm39) splice site probably null
R4911:Slc5a9 UTSW 4 111,748,941 (GRCm39) splice site probably null
R4948:Slc5a9 UTSW 4 111,748,941 (GRCm39) splice site probably null
R4953:Slc5a9 UTSW 4 111,748,941 (GRCm39) splice site probably null
R5222:Slc5a9 UTSW 4 111,755,808 (GRCm39) missense possibly damaging 0.55
R5376:Slc5a9 UTSW 4 111,750,414 (GRCm39) missense possibly damaging 0.80
R5502:Slc5a9 UTSW 4 111,750,366 (GRCm39) nonsense probably null
R5851:Slc5a9 UTSW 4 111,742,797 (GRCm39) missense probably benign
R6030:Slc5a9 UTSW 4 111,742,725 (GRCm39) missense possibly damaging 0.64
R6030:Slc5a9 UTSW 4 111,742,725 (GRCm39) missense possibly damaging 0.64
R6125:Slc5a9 UTSW 4 111,741,002 (GRCm39) missense probably damaging 1.00
R6326:Slc5a9 UTSW 4 111,737,450 (GRCm39) missense probably benign
R6438:Slc5a9 UTSW 4 111,749,022 (GRCm39) missense probably benign 0.00
R7105:Slc5a9 UTSW 4 111,755,892 (GRCm39) missense probably benign
R7166:Slc5a9 UTSW 4 111,741,036 (GRCm39) missense probably benign 0.04
R7489:Slc5a9 UTSW 4 111,741,113 (GRCm39) missense probably damaging 1.00
R7599:Slc5a9 UTSW 4 111,734,937 (GRCm39) missense probably benign
R7662:Slc5a9 UTSW 4 111,734,737 (GRCm39) makesense probably null
R7762:Slc5a9 UTSW 4 111,747,371 (GRCm39) missense probably damaging 0.99
R7992:Slc5a9 UTSW 4 111,747,729 (GRCm39) missense probably benign 0.37
R8851:Slc5a9 UTSW 4 111,755,790 (GRCm39) missense probably damaging 0.97
R8918:Slc5a9 UTSW 4 111,741,147 (GRCm39) missense probably benign 0.00
R9387:Slc5a9 UTSW 4 111,750,864 (GRCm39) missense probably damaging 1.00
R9425:Slc5a9 UTSW 4 111,734,803 (GRCm39) missense probably damaging 0.96
R9483:Slc5a9 UTSW 4 111,747,418 (GRCm39) missense probably damaging 1.00
R9506:Slc5a9 UTSW 4 111,750,439 (GRCm39) nonsense probably null
X0012:Slc5a9 UTSW 4 111,750,511 (GRCm39) missense probably damaging 0.99
Z1177:Slc5a9 UTSW 4 111,749,013 (GRCm39) missense probably null 1.00
Predicted Primers PCR Primer
(F):5'- AATGTGGTATGAGAAATGGCCC -3'
(R):5'- AAGGTCTCCAGTGTCTTCTCTG -3'

Sequencing Primer
(F):5'- ACTCCTAGCCCCATGTGAG -3'
(R):5'- TGGTTTCCTAGTGTATCTGAACATAG -3'
Posted On 2016-06-17