Mutagenetix > Incidental Mutations

Incidental Mutation 'R5039:Ccdc87'

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395732

Institutional Source

Beutler Lab

Gene Symbol

Ccdc87

Ensembl Gene

ENSMUSG00000067872

Gene Name

coiled-coil domain containing 87

Synonyms

MMRRC Submission

042629-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.065) question?

Stock #

R5039 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

4839366-4842528 bp(+) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

T to C at 4840401 bp

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000035486 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000037246] [ENSMUST00000088653]

Predicted Effect

probably null
Transcript: ENSMUST00000037246

SMART Domains

Protein: ENSMUSP00000035486
Gene: ENSMUSG00000034108

Domain	Start	End	E-Value	Type
Pfam:HMA	15	72	2.4e-12	PFAM
Pfam:Sod_Cu	93	230	6.7e-43	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000088653
AA Change: L307P

PolyPhen 2 Score 0.022 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000086028
Gene: ENSMUSG00000067872
AA Change: L307P

Domain	Start	End	E-Value	Type
low complexity region	25	38	N/A	INTRINSIC
low complexity region	287	296	N/A	INTRINSIC
low complexity region	326	341	N/A	INTRINSIC
low complexity region	373	386	N/A	INTRINSIC
low complexity region	619	632	N/A	INTRINSIC
Pfam:MAP65_ASE1	669	855	2.1e-17	PFAM

Meta Mutation Damage Score

0.0953

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.0%
20x: 94.5%

Validation Efficiency

100% (61/61)

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921501E09Rik	A	C	17: 33,067,760	C23G	probably damaging	Het
Abcg4	G	A	9: 44,281,566	A161V	probably damaging	Het
Anapc2	T	C	2: 25,274,796	I64T	possibly damaging	Het
Arfgef1	T	C	1: 10,199,736	D396G	probably benign	Het
Axl	C	T	7: 25,785,915	V163M	probably damaging	Het
Blm	G	A	7: 80,505,873	P353S	possibly damaging	Het
Btaf1	T	C	19: 36,990,762	Y1116H	probably benign	Het
Ccdc18	T	A	5: 108,158,648		probably null	Het
Cdhr1	T	C	14: 37,079,643	N781S	probably benign	Het
Ctr9	C	A	7: 111,042,857	H297Q	probably benign	Het
Cyp2c55	A	G	19: 39,038,143	D398G	probably benign	Het
Dnase1l1	C	T	X: 74,277,038		probably null	Het
Dnmt3l	T	C	10: 78,052,900		probably null	Het
Dock4	C	A	12: 40,817,746	N1440K	probably damaging	Het
Etnk1	T	A	6: 143,195,317		probably null	Het
Fam120a	A	T	13: 48,910,250		probably null	Het
Fanca	T	C	8: 123,284,046	D908G	probably benign	Het
Gm17535	T	A	9: 3,035,786	L218H	probably benign	Het
Gm3633	A	C	14: 42,639,204	N42K	possibly damaging	Het
Gm4781	C	A	10: 100,396,989		noncoding transcript	Het
Gm8741	G	T	17: 35,336,086		noncoding transcript	Het
Gpr139	A	G	7: 119,144,942	V140A	probably benign	Het
Ighv1-62-3	G	T	12: 115,461,394	T13K	probably benign	Het
Itgb2l	T	C	16: 96,425,005	T629A	possibly damaging	Het
Kcnb2	T	C	1: 15,709,500	S199P	probably damaging	Het
Kdm1b	G	A	13: 47,077,486	G663D	probably damaging	Het
Lama1	A	G	17: 67,745,893	D407G	possibly damaging	Het
Macf1	T	C	4: 123,511,220	K391R	probably damaging	Het
Magi3	A	T	3: 104,105,791	S127T	probably damaging	Het
Map2	A	T	1: 66,438,796	D1759V	probably damaging	Het
Mllt6	G	A	11: 97,669,500	S210N	possibly damaging	Het
Myrfl	T	C	10: 116,822,711	D447G	probably damaging	Het
Ndufb7	A	G	8: 83,571,465		probably benign	Het
Nt5e	T	A	9: 88,363,581	N301K	probably benign	Het
Olfr944	T	A	9: 39,218,114	Y252*	probably null	Het
Olfr960	A	T	9: 39,623,560	T146S	possibly damaging	Het
Pcdh10	A	G	3: 45,381,861	N870S	probably damaging	Het
Pcdh18	A	G	3: 49,754,856	V670A	probably benign	Het
Polr1c	G	T	17: 46,247,709		probably benign	Het
Ric3	G	C	7: 109,038,723	S274R	probably benign	Het
Rimbp3	A	G	16: 17,213,331	T1540A	probably damaging	Het
Rnf165	A	G	18: 77,462,912	S107P	probably damaging	Het
Rp1l1	A	T	14: 64,031,356	M1464L	probably benign	Het
Slc41a3	A	G	6: 90,626,417	Y140C	probably damaging	Het
Ssb	A	T	2: 69,866,237	E38D	possibly damaging	Het
Syt14	A	T	1: 193,026,984	I16N	probably damaging	Het
Tet3	T	C	6: 83,375,896	T973A	probably damaging	Het
Tial1	T	C	7: 128,443,968		probably benign	Het
Tnfrsf1a	A	G	6: 125,360,712	T89A	possibly damaging	Het
Trpv5	T	C	6: 41,675,945	Y98C	possibly damaging	Het
Ylpm1	T	A	12: 85,015,493	S265T	probably damaging	Het
Ylpm1	A	G	12: 85,042,239	D1006G	probably damaging	Het

Other mutations in Ccdc87

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02321:Ccdc87	APN	19	4841031	missense	probably damaging	1.00
IGL02754:Ccdc87	APN	19	4839861	missense	probably damaging	1.00
IGL03124:Ccdc87	APN	19	4841054	missense	probably damaging	0.99
IGL03151:Ccdc87	APN	19	4841557	missense	probably benign	0.01
R1572:Ccdc87	UTSW	19	4840313	missense	probably benign	0.03
R2031:Ccdc87	UTSW	19	4841687	missense	probably damaging	1.00
R3714:Ccdc87	UTSW	19	4840259	missense	probably benign	0.00
R3734:Ccdc87	UTSW	19	4841923	missense	probably damaging	1.00
R3854:Ccdc87	UTSW	19	4839518	missense	probably benign	0.36
R4643:Ccdc87	UTSW	19	4841849	missense	probably damaging	1.00
R4820:Ccdc87	UTSW	19	4840551	missense	probably damaging	1.00
R5634:Ccdc87	UTSW	19	4840665	missense	probably benign	0.00
R5659:Ccdc87	UTSW	19	4840850	missense	probably damaging	0.99
R6065:Ccdc87	UTSW	19	4841240	missense	probably benign
R6237:Ccdc87	UTSW	19	4841379	missense	probably benign	0.15
R6337:Ccdc87	UTSW	19	4839801	missense	probably benign	0.00
R6349:Ccdc87	UTSW	19	4841319	missense	probably damaging	1.00
R6429:Ccdc87	UTSW	19	4841235	missense	probably benign	0.06
R6520:Ccdc87	UTSW	19	4841789	missense	probably damaging	0.99
R7131:Ccdc87	UTSW	19	4841757	missense	probably damaging	1.00
R7237:Ccdc87	UTSW	19	4839762	missense	probably benign	0.00
R7349:Ccdc87	UTSW	19	4841840	missense	probably damaging	0.98
R7848:Ccdc87	UTSW	19	4841508	missense	probably damaging	1.00
R8382:Ccdc87	UTSW	19	4839990	missense	possibly damaging	0.88
R8421:Ccdc87	UTSW	19	4841285	missense	possibly damaging	0.79
Z1088:Ccdc87	UTSW	19	4840722	missense	probably benign	0.02
Z1176:Ccdc87	UTSW	19	4841923	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- ATGATTTCCCCAGTGAGCCC -3'
(R):5'- GAGTATCGACTCCACTCCATTC -3'

Sequencing Primer
(F):5'- CCGAACCTGATCCAGTGGAAG -3'
(R):5'- AGTATCGACTCCACTCCATTCTCATG -3'

Posted On

2016-06-21