Mutagenetix > Incidental Mutation

Incidental Mutation 'R5076:Lrrc39'

395752

Institutional Source

Beutler Lab

Gene Symbol

Lrrc39

Ensembl Gene

ENSMUSG00000027961

Gene Name

leucine rich repeat containing 39

Synonyms

2010005E21Rik, 9430028I06Rik

MMRRC Submission

042665-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.573) question?

Stock #

R5076 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

116562973-116583134 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 116579540 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Valine at position 283 (E283V)

Ref Sequence

ENSEMBL: ENSMUSP00000029573 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029573] [ENSMUST00000041524] [ENSMUST00000183638] [ENSMUST00000184963]

AlphaFold

Q8BGI7

Predicted Effect

probably benign
Transcript: ENSMUST00000029573
AA Change: E283V

PolyPhen 2 Score 0.369 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000029573
Gene: ENSMUSG00000027961
AA Change: E283V

Domain	Start	End	E-Value	Type
LRR	105	127	1.15e1	SMART
LRR_TYP	128	151	7.26e-3	SMART
LRR	175	197	6.58e0	SMART
LRR	198	220	1e1	SMART
LRR	221	243	7.16e0	SMART
LRR	244	267	6.58e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000041524

SMART Domains

Protein: ENSMUSP00000047320
Gene: ENSMUSG00000033439

Domain	Start	End	E-Value	Type
Pfam:zf-TRM13_CCCH	17	45	7.2e-17	PFAM
Pfam:zf-U11-48K	56	80	3.4e-12	PFAM
Pfam:TRM13	165	469	7e-96	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156161

Predicted Effect

probably benign
Transcript: ENSMUST00000183638

SMART Domains

Protein: ENSMUSP00000139223
Gene: ENSMUSG00000033439

Domain	Start	End	E-Value	Type
Pfam:zf-TRM13_CCCH	16	46	1.4e-17	PFAM
Pfam:zf-U11-48K	55	81	1.2e-12	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000184963

SMART Domains

Protein: ENSMUSP00000138868
Gene: ENSMUSG00000033439

Domain	Start	End	E-Value	Type
Pfam:zf-TRM13_CCCH	16	46	2.9e-17	PFAM
Pfam:zf-U11-48K	55	81	2.3e-12	PFAM
Pfam:TRM13	165	285	3.4e-42	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000199439

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.3%
20x: 92.0%

Validation Efficiency

97% (66/68)

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933434E20Rik	A	G	3: 90,056,252	I72V	probably benign	Het
Aadacl3	G	A	4: 144,456,070	P276L	possibly damaging	Het
Acp6	T	A	3: 97,167,989	S180T	probably benign	Het
Adgrd1	A	T	5: 129,143,989	R449*	probably null	Het
Ak1	T	C	2: 32,633,448	V176A	probably damaging	Het
Capzb	A	T	4: 139,287,814	D226V	possibly damaging	Het
Cd34	A	T	1: 194,948,030		probably benign	Het
Cdh15	C	A	8: 122,864,348	D445E	possibly damaging	Het
Chil4	A	G	3: 106,202,597	F367L	probably damaging	Het
Clstn2	T	C	9: 97,483,079	Y458C	probably damaging	Het
Ctsw	T	C	19: 5,468,458	Y9C	probably benign	Het
Dhrs7	T	C	12: 72,659,481	D50G	probably benign	Het
Dnah14	A	G	1: 181,757,234	K3177E	probably benign	Het
Ehd1	T	C	19: 6,277,221	F83L	probably benign	Het
Eif5a2	G	A	3: 28,782,737	V59I	possibly damaging	Het
Emilin3	T	A	2: 160,909,318		probably null	Het
Entpd8	A	G	2: 25,085,054	S426G	possibly damaging	Het
Epb41l4b	C	T	4: 57,040,984	G493D	probably damaging	Het
Fam208b	C	T	13: 3,576,357	V1198I	probably benign	Het
Gm11596	C	T	11: 99,792,872	G141R	unknown	Het
Gm1840	T	G	8: 5,640,130		noncoding transcript	Het
H2-Q4	T	C	17: 35,380,441	Y167H	probably damaging	Het
Hjurp	GT	GTT	1: 88,266,524		probably null	Het
Itpr1	A	G	6: 108,405,529		probably null	Het
Kif2c	A	T	4: 117,174,869		probably benign	Het
Klrb1-ps1	C	T	6: 129,119,788		noncoding transcript	Het
Krtap9-5	A	T	11: 99,949,468	T332S	unknown	Het
Mdga1	A	G	17: 29,850,554	S447P	possibly damaging	Het
Mindy1	G	A	3: 95,295,399	V425M	probably benign	Het
Mllt6	G	A	11: 97,669,500	S210N	possibly damaging	Het
Mrps5	T	A	2: 127,600,852	Y280*	probably null	Het
Muc3a	T	A	5: 137,210,540	T159S	probably damaging	Het
Olfr1252	T	A	2: 89,721,401	T237S	probably damaging	Het
Olfr1310	A	T	2: 112,008,592	M198K	probably damaging	Het
Olfr286	T	A	15: 98,226,761	I295F	probably damaging	Het
Pcdhga4	G	A	18: 37,685,595	V66I	probably benign	Het
Pdhx	T	C	2: 103,041,077	T203A	probably damaging	Het
Pdss1	A	G	2: 22,899,917		probably null	Het
Pdxk	G	T	10: 78,450,307	Q103K	probably benign	Het
Peg3	A	G	7: 6,708,420	C1268R	probably damaging	Het
Pitpnc1	A	T	11: 107,296,267	S77T	probably damaging	Het
Pnisr	T	A	4: 21,874,990		probably benign	Het
Poc1b	C	T	10: 99,107,841	T22I	probably damaging	Het
Ppfia1	G	A	7: 144,506,264	R604W	probably damaging	Het
Ppp1r3a	A	G	6: 14,754,681	F189S	probably damaging	Het
Rbks	T	A	5: 31,650,451	Y99*	probably null	Het
Rsg1	A	G	4: 141,217,385	I82M	probably benign	Het
Sh3rf2	G	T	18: 42,053,924	C36F	probably damaging	Het
Spock3	T	A	8: 63,345,855	N303K	probably damaging	Het
Tcaf2	T	C	6: 42,629,467	T518A	probably benign	Het
Tmem163	A	T	1: 127,500,276	V191D	probably damaging	Het
Trappc6b	A	G	12: 59,050,308	V76A	probably damaging	Het
Ube2nl	A	G	7: 61,549,532		noncoding transcript	Het
Unc5d	C	T	8: 28,694,676	V599M	possibly damaging	Het
Vmn1r184	A	T	7: 26,266,921	M31L	probably benign	Het
Vrtn	C	A	12: 84,649,474	Q333K	probably damaging	Het
Zfp788	T	A	7: 41,648,584	F163I	possibly damaging	Het
Zfyve1	C	T	12: 83,555,647	R458H	probably damaging	Het

Other mutations in Lrrc39

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00340:Lrrc39	APN	3	116570981	splice site	probably benign
IGL01017:Lrrc39	APN	3	116570851	missense	probably benign	0.01
IGL01717:Lrrc39	APN	3	116579497	unclassified	probably benign
IGL01728:Lrrc39	APN	3	116579500	unclassified	probably benign
IGL02208:Lrrc39	APN	3	116578274	missense	probably damaging	1.00
IGL02801:Lrrc39	APN	3	116578346	missense	possibly damaging	0.89
R0279:Lrrc39	UTSW	3	116578303	missense	probably benign	0.19
R1351:Lrrc39	UTSW	3	116565820	missense	possibly damaging	0.51
R1436:Lrrc39	UTSW	3	116579644	splice site	probably null
R1641:Lrrc39	UTSW	3	116570913	missense	probably damaging	0.99
R1716:Lrrc39	UTSW	3	116579567	missense	probably benign	0.00
R2199:Lrrc39	UTSW	3	116570961	missense	probably damaging	0.97
R2410:Lrrc39	UTSW	3	116581250	missense	probably benign	0.02
R4696:Lrrc39	UTSW	3	116570120	missense	probably damaging	1.00
R4816:Lrrc39	UTSW	3	116568866	critical splice donor site	probably null
R6152:Lrrc39	UTSW	3	116570975	critical splice donor site	probably null
R7124:Lrrc39	UTSW	3	116565913	missense	probably benign
R8855:Lrrc39	UTSW	3	116570141	missense	probably damaging	1.00
R8866:Lrrc39	UTSW	3	116570141	missense	probably damaging	1.00
R8941:Lrrc39	UTSW	3	116565847	missense	probably damaging	0.98
R9480:Lrrc39	UTSW	3	116565826	missense	probably benign	0.03
X0028:Lrrc39	UTSW	3	116565871	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GATCCCAGCAAGATAATCTGTTATC -3'
(R):5'- GCCAGAATGACCACCGTTTG -3'

Sequencing Primer
(F):5'- TGCACTTCTATGGCACCT -3'
(R):5'- GAATGACCACCGTTTGATAGAAAC -3'

Posted On

2016-06-21