Mutagenetix > Incidental Mutation

Incidental Mutation 'R5159:Lpcat3'

396872

Institutional Source

Beutler Lab

Gene Symbol

Lpcat3

Ensembl Gene

ENSMUSG00000004270

Gene Name

lysophosphatidylcholine acyltransferase 3

Synonyms

Oact5, Mboat5, Grcc3f

MMRRC Submission

042741-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.158) question?

Stock #

R5159 (G1)

Quality Score

189

Status

Validated

Chromosome

Chromosomal Location

124639887-124681142 bp(+) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

A to G at 124676357 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000144738 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000004379] [ENSMUST00000004381] [ENSMUST00000128721]

AlphaFold

Q91V01

Predicted Effect

probably benign
Transcript: ENSMUST00000004379

SMART Domains

Protein: ENSMUSP00000004379
Gene: ENSMUSG00000004268

Domain	Start	End	E-Value	Type
Pfam:EMG1	45	238	2.9e-87	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000004381

SMART Domains

Protein: ENSMUSP00000004381
Gene: ENSMUSG00000004270

Domain	Start	End	E-Value	Type
transmembrane domain	40	62	N/A	INTRINSIC
transmembrane domain	69	91	N/A	INTRINSIC
Pfam:MBOAT	126	437	1.2e-81	PFAM
transmembrane domain	454	473	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125795

Predicted Effect

probably benign
Transcript: ENSMUST00000128721

SMART Domains

Protein: ENSMUSP00000144738
Gene: ENSMUSG00000004270

Domain	Start	End	E-Value	Type
transmembrane domain	41	63	N/A	INTRINSIC
transmembrane domain	73	95	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130020

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133797

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135516

SMART Domains

Protein: ENSMUSP00000122436
Gene: ENSMUSG00000004270

Domain	Start	End	E-Value	Type
transmembrane domain	40	62	N/A	INTRINSIC
transmembrane domain	69	91	N/A	INTRINSIC
transmembrane domain	111	133	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141069

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150597

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000204334

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141546

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152176

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 94.7%

Validation Efficiency

100% (63/63)

MGI Phenotype

PHENOTYPE: Nullizygous mice show low blood glucose levels and postnatal death. Intestine-specific knockouts fail to thrive and show enterocyte lipid accumulation and low plasma triglycerides (TGs). Liver-specific knockouts show low plasma TGs, fatty liver, and secrete VLDL lacking arachidonoyl phospholipids. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9930111J21Rik1	T	C	11: 48,839,352 (GRCm39)	T412A	probably benign	Het
Aldh5a1	T	A	13: 25,097,776 (GRCm39)	M420L	possibly damaging	Het
Armc2	A	G	10: 41,884,711 (GRCm39)	S77P	probably damaging	Het
Avil	A	G	10: 126,856,317 (GRCm39)		probably null	Het
Bltp3a	A	G	17: 28,100,530 (GRCm39)	H323R	probably damaging	Het
Bmp5	T	A	9: 75,801,035 (GRCm39)	F388L	probably damaging	Het
Brca2	T	G	5: 150,465,573 (GRCm39)	V1779G	possibly damaging	Het
Cblb	T	A	16: 51,932,483 (GRCm39)	S147T	probably damaging	Het
Cblc	T	C	7: 19,519,233 (GRCm39)	E409G	probably benign	Het
Cdc34b	C	T	11: 94,632,886 (GRCm39)	R29W	probably damaging	Het
Clic6	T	A	16: 92,324,954 (GRCm39)	Y371N	probably benign	Het
Col5a2	A	G	1: 45,425,991 (GRCm39)		probably null	Het
Coro1a	A	T	7: 126,302,221 (GRCm39)	V42D	probably damaging	Het
Cpa3	C	T	3: 20,281,387 (GRCm39)	C173Y	probably damaging	Het
Crb1	A	C	1: 139,170,756 (GRCm39)	V817G	probably damaging	Het
Cyp2c39	A	G	19: 39,549,378 (GRCm39)	T299A	possibly damaging	Het
Dock5	G	A	14: 68,029,738 (GRCm39)	R1019C	probably benign	Het
Exoc8	T	C	8: 125,622,952 (GRCm39)	T472A	probably benign	Het
Fancc	A	G	13: 63,469,679 (GRCm39)		probably null	Het
Fcgbpl1	T	A	7: 27,852,733 (GRCm39)	M1340K	probably benign	Het
Inpp5d	T	C	1: 87,604,064 (GRCm39)	L244P	probably damaging	Het
Ireb2	A	G	9: 54,799,831 (GRCm39)	N424S	probably benign	Het
Krt35	T	C	11: 99,984,875 (GRCm39)	D261G	probably damaging	Het
Lipc	T	A	9: 70,720,192 (GRCm39)	I272L	probably benign	Het
Lzts1	T	C	8: 69,591,236 (GRCm39)	D304G	probably benign	Het
Mdn1	A	G	4: 32,774,008 (GRCm39)	I5540V	possibly damaging	Het
Msln	T	C	17: 25,970,563 (GRCm39)	S231G	probably benign	Het
Mup8	G	A	4: 60,221,062 (GRCm39)	T101M	probably benign	Het
Myh8	T	C	11: 67,179,179 (GRCm39)	I524T	probably damaging	Het
Pappa2	A	G	1: 158,589,189 (GRCm39)	C1679R	probably damaging	Het
Pcdhb1	T	C	18: 37,399,416 (GRCm39)	S456P	possibly damaging	Het
Pcdhga5	A	G	18: 37,828,719 (GRCm39)	N389S	probably benign	Het
Pitrm1	C	A	13: 6,617,507 (GRCm39)	S620R	probably benign	Het
Plod3	T	A	5: 137,023,932 (GRCm39)		probably benign	Het
Por	A	T	5: 135,759,771 (GRCm39)	Q194L	probably benign	Het
Prkag3	A	T	1: 74,780,646 (GRCm39)	Y396N	probably damaging	Het
R3hcc1	T	C	14: 69,935,053 (GRCm39)		probably null	Het
Rcan3	C	T	4: 135,152,592 (GRCm39)	S43N	probably damaging	Het
Rhot1	A	G	11: 80,111,098 (GRCm39)	T31A	probably damaging	Het
Rnps1	T	G	17: 24,637,486 (GRCm39)	S43A	unknown	Het
Rp1	T	C	1: 4,416,426 (GRCm39)	D1562G	possibly damaging	Het
Rps19-ps13	A	G	18: 40,859,428 (GRCm39)		noncoding transcript	Het
Serpina3c	A	T	12: 104,115,771 (GRCm39)	S258T	possibly damaging	Het
Smc2	G	A	4: 52,460,181 (GRCm39)	R519Q	possibly damaging	Het
Sorbs2	A	T	8: 46,248,767 (GRCm39)	T593S	probably benign	Het
Sptbn2	A	G	19: 4,787,885 (GRCm39)	T955A	probably benign	Het
Stfa3	T	C	16: 36,272,581 (GRCm39)	K40E	probably damaging	Het
Tmem87b	A	G	2: 128,666,378 (GRCm39)	E75G	probably benign	Het
Tmprss15	T	C	16: 78,800,298 (GRCm39)	Q595R	probably benign	Het
Trak1	A	T	9: 121,289,478 (GRCm39)	I597F	probably damaging	Het
Trat1	T	C	16: 48,555,300 (GRCm39)	D144G	probably damaging	Het
Trim25	T	C	11: 88,890,358 (GRCm39)	V15A	probably benign	Het
Tulp1	A	C	17: 28,578,034 (GRCm39)		probably null	Het
Txndc15	T	A	13: 55,865,734 (GRCm39)	M66K	probably benign	Het
Vmn1r206	T	A	13: 22,804,775 (GRCm39)	N144I	probably damaging	Het
Wwc2	T	C	8: 48,353,796 (GRCm39)	T113A	probably benign	Het
Xpo5	A	C	17: 46,528,535 (GRCm39)	E313D	probably damaging	Het
Zfp790	C	T	7: 29,529,192 (GRCm39)	H626Y	probably benign	Het

Other mutations in Lpcat3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01310:Lpcat3	APN	6	124,676,301 (GRCm39)	missense	possibly damaging	0.78
IGL02279:Lpcat3	APN	6	124,675,072 (GRCm39)	missense	probably damaging	1.00
IGL02869:Lpcat3	APN	6	124,679,970 (GRCm39)	missense	possibly damaging	0.65
R0045:Lpcat3	UTSW	6	124,678,437 (GRCm39)	missense	probably benign	0.12
R0045:Lpcat3	UTSW	6	124,678,437 (GRCm39)	missense	probably benign	0.12
R2075:Lpcat3	UTSW	6	124,680,066 (GRCm39)	missense	probably damaging	1.00
R3757:Lpcat3	UTSW	6	124,676,955 (GRCm39)	splice site	probably null
R4181:Lpcat3	UTSW	6	124,680,187 (GRCm39)	unclassified	probably benign
R4583:Lpcat3	UTSW	6	124,680,286 (GRCm39)	missense	possibly damaging	0.92
R5134:Lpcat3	UTSW	6	124,679,493 (GRCm39)	missense	probably benign	0.00
R6703:Lpcat3	UTSW	6	124,640,185 (GRCm39)	missense	probably benign	0.02
R6833:Lpcat3	UTSW	6	124,676,974 (GRCm39)	missense	probably damaging	1.00
R7261:Lpcat3	UTSW	6	124,675,050 (GRCm39)	missense	probably benign	0.02
R7604:Lpcat3	UTSW	6	124,679,493 (GRCm39)	missense	probably benign	0.00
R9399:Lpcat3	UTSW	6	124,640,283 (GRCm39)	missense	probably benign	0.00
R9620:Lpcat3	UTSW	6	124,680,543 (GRCm39)	missense	probably damaging	0.99
R9756:Lpcat3	UTSW	6	124,679,967 (GRCm39)	critical splice acceptor site	probably null
X0017:Lpcat3	UTSW	6	124,675,081 (GRCm39)	missense	possibly damaging	0.49

Predicted Primers

PCR Primer
(F):5'- ATCTCAGGAGGAATGGGCAC -3'
(R):5'- CTGGGCTAACTGGTGAGAAC -3'

Sequencing Primer
(F):5'- ACGGTCCTAAACGCTGCTC -3'
(R):5'- TGAGAACCAAGGAACCCTGCTG -3'

Posted On

2016-06-21