Incidental Mutation 'R5159:Fancc'
| ID |
396897 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Fancc
|
| Ensembl Gene |
ENSMUSG00000021461 |
| Gene Name |
Fanconi anemia, complementation group C |
| Synonyms |
Facc |
| MMRRC Submission |
042741-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably essential
(E-score: 0.901)
|
| Stock # |
R5159 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
13 |
| Chromosomal Location |
63452519-63645126 bp(-) (GRCm39) |
| Type of Mutation |
critical splice donor site (2 bp from exon) |
| DNA Base Change (assembly) |
A to G
at 63469679 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000124406
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000073029]
[ENSMUST00000099444]
[ENSMUST00000099444]
[ENSMUST00000161977]
[ENSMUST00000163091]
[ENSMUST00000163091]
[ENSMUST00000220684]
|
| AlphaFold |
P50652 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000073029
|
| SMART Domains |
Protein: ENSMUSP00000072788
Gene: ENSMUSG00000021461
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Fanconi_C
|
1 |
558 |
1.8e-305 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000099444
|
| SMART Domains |
Protein: ENSMUSP00000097043
Gene: ENSMUSG00000021461
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Fanconi_C
|
1 |
461 |
5.8e-243 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000099444
|
| SMART Domains |
Protein: ENSMUSP00000097043
Gene: ENSMUSG00000021461
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Fanconi_C
|
1 |
461 |
5.8e-243 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000159056
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000159152
|
| SMART Domains |
Protein: ENSMUSP00000124560
Gene: ENSMUSG00000021458
| Domain | Start | End | E-Value | Type |
|---|
|
Leuk-A4-hydro_C
|
1 |
113 |
4.63e-24 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000160166
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000160333
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000160336
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000161977
|
| SMART Domains |
Protein: ENSMUSP00000123817
Gene: ENSMUSG00000021461
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Fanconi_C
|
1 |
558 |
1.8e-305 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000163091
|
| SMART Domains |
Protein: ENSMUSP00000124406
Gene: ENSMUSG00000021461
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Fanconi_C
|
1 |
517 |
4.8e-238 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000163091
|
| SMART Domains |
Protein: ENSMUSP00000124406
Gene: ENSMUSG00000021461
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Fanconi_C
|
1 |
517 |
4.8e-238 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000220684
|
| Meta Mutation Damage Score |
0.9486 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.1%
- 20x: 94.7%
|
| Validation Efficiency |
100% (63/63) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The Fanconi anemia complementation group (FANC) currently includes FANCA, FANCB, FANCC, FANCD1 (also called BRCA2), FANCD2, FANCE, FANCF, FANCG, FANCI, FANCJ (also called BRIP1), FANCL, FANCM and FANCN (also called PALB2). The previously defined group FANCH is the same as FANCA. Fanconi anemia is a genetically heterogeneous recessive disorder characterized by cytogenetic instability, hypersensitivity to DNA crosslinking agents, increased chromosomal breakage, and defective DNA repair. The members of the Fanconi anemia complementation group do not share sequence similarity; they are related by their assembly into a common nuclear protein complex. This gene encodes the protein for complementation group C. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mutants are grossly normal, but chromosome aberrations and sensitivity to DNA crosslinkers are seen. Both sexes have fewer germ cell numbers and impaired fertility. Marrow progenitors show decrease in colony forming ability. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 58 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 9930111J21Rik1 |
T |
C |
11: 48,839,352 (GRCm39) |
T412A |
probably benign |
Het |
| Aldh5a1 |
T |
A |
13: 25,097,776 (GRCm39) |
M420L |
possibly damaging |
Het |
| Armc2 |
A |
G |
10: 41,884,711 (GRCm39) |
S77P |
probably damaging |
Het |
| Avil |
A |
G |
10: 126,856,317 (GRCm39) |
|
probably null |
Het |
| Bltp3a |
A |
G |
17: 28,100,530 (GRCm39) |
H323R |
probably damaging |
Het |
| Bmp5 |
T |
A |
9: 75,801,035 (GRCm39) |
F388L |
probably damaging |
Het |
| Brca2 |
T |
G |
5: 150,465,573 (GRCm39) |
V1779G |
possibly damaging |
Het |
| Cblb |
T |
A |
16: 51,932,483 (GRCm39) |
S147T |
probably damaging |
Het |
| Cblc |
T |
C |
7: 19,519,233 (GRCm39) |
E409G |
probably benign |
Het |
| Cdc34b |
C |
T |
11: 94,632,886 (GRCm39) |
R29W |
probably damaging |
Het |
| Clic6 |
T |
A |
16: 92,324,954 (GRCm39) |
Y371N |
probably benign |
Het |
| Col5a2 |
A |
G |
1: 45,425,991 (GRCm39) |
|
probably null |
Het |
| Coro1a |
A |
T |
7: 126,302,221 (GRCm39) |
V42D |
probably damaging |
Het |
| Cpa3 |
C |
T |
3: 20,281,387 (GRCm39) |
C173Y |
probably damaging |
Het |
| Crb1 |
A |
C |
1: 139,170,756 (GRCm39) |
V817G |
probably damaging |
Het |
| Cyp2c39 |
A |
G |
19: 39,549,378 (GRCm39) |
T299A |
possibly damaging |
Het |
| Dock5 |
G |
A |
14: 68,029,738 (GRCm39) |
R1019C |
probably benign |
Het |
| Exoc8 |
T |
C |
8: 125,622,952 (GRCm39) |
T472A |
probably benign |
Het |
| Fcgbpl1 |
T |
A |
7: 27,852,733 (GRCm39) |
M1340K |
probably benign |
Het |
| Inpp5d |
T |
C |
1: 87,604,064 (GRCm39) |
L244P |
probably damaging |
Het |
| Ireb2 |
A |
G |
9: 54,799,831 (GRCm39) |
N424S |
probably benign |
Het |
| Krt35 |
T |
C |
11: 99,984,875 (GRCm39) |
D261G |
probably damaging |
Het |
| Lipc |
T |
A |
9: 70,720,192 (GRCm39) |
I272L |
probably benign |
Het |
| Lpcat3 |
A |
G |
6: 124,676,357 (GRCm39) |
|
probably benign |
Het |
| Lzts1 |
T |
C |
8: 69,591,236 (GRCm39) |
D304G |
probably benign |
Het |
| Mdn1 |
A |
G |
4: 32,774,008 (GRCm39) |
I5540V |
possibly damaging |
Het |
| Msln |
T |
C |
17: 25,970,563 (GRCm39) |
S231G |
probably benign |
Het |
| Mup8 |
G |
A |
4: 60,221,062 (GRCm39) |
T101M |
probably benign |
Het |
| Myh8 |
T |
C |
11: 67,179,179 (GRCm39) |
I524T |
probably damaging |
Het |
| Pappa2 |
A |
G |
1: 158,589,189 (GRCm39) |
C1679R |
probably damaging |
Het |
| Pcdhb1 |
T |
C |
18: 37,399,416 (GRCm39) |
S456P |
possibly damaging |
Het |
| Pcdhga5 |
A |
G |
18: 37,828,719 (GRCm39) |
N389S |
probably benign |
Het |
| Pitrm1 |
C |
A |
13: 6,617,507 (GRCm39) |
S620R |
probably benign |
Het |
| Plod3 |
T |
A |
5: 137,023,932 (GRCm39) |
|
probably benign |
Het |
| Por |
A |
T |
5: 135,759,771 (GRCm39) |
Q194L |
probably benign |
Het |
| Prkag3 |
A |
T |
1: 74,780,646 (GRCm39) |
Y396N |
probably damaging |
Het |
| R3hcc1 |
T |
C |
14: 69,935,053 (GRCm39) |
|
probably null |
Het |
| Rcan3 |
C |
T |
4: 135,152,592 (GRCm39) |
S43N |
probably damaging |
Het |
| Rhot1 |
A |
G |
11: 80,111,098 (GRCm39) |
T31A |
probably damaging |
Het |
| Rnps1 |
T |
G |
17: 24,637,486 (GRCm39) |
S43A |
unknown |
Het |
| Rp1 |
T |
C |
1: 4,416,426 (GRCm39) |
D1562G |
possibly damaging |
Het |
| Rps19-ps13 |
A |
G |
18: 40,859,428 (GRCm39) |
|
noncoding transcript |
Het |
| Serpina3c |
A |
T |
12: 104,115,771 (GRCm39) |
S258T |
possibly damaging |
Het |
| Smc2 |
G |
A |
4: 52,460,181 (GRCm39) |
R519Q |
possibly damaging |
Het |
| Sorbs2 |
A |
T |
8: 46,248,767 (GRCm39) |
T593S |
probably benign |
Het |
| Sptbn2 |
A |
G |
19: 4,787,885 (GRCm39) |
T955A |
probably benign |
Het |
| Stfa3 |
T |
C |
16: 36,272,581 (GRCm39) |
K40E |
probably damaging |
Het |
| Tmem87b |
A |
G |
2: 128,666,378 (GRCm39) |
E75G |
probably benign |
Het |
| Tmprss15 |
T |
C |
16: 78,800,298 (GRCm39) |
Q595R |
probably benign |
Het |
| Trak1 |
A |
T |
9: 121,289,478 (GRCm39) |
I597F |
probably damaging |
Het |
| Trat1 |
T |
C |
16: 48,555,300 (GRCm39) |
D144G |
probably damaging |
Het |
| Trim25 |
T |
C |
11: 88,890,358 (GRCm39) |
V15A |
probably benign |
Het |
| Tulp1 |
A |
C |
17: 28,578,034 (GRCm39) |
|
probably null |
Het |
| Txndc15 |
T |
A |
13: 55,865,734 (GRCm39) |
M66K |
probably benign |
Het |
| Vmn1r206 |
T |
A |
13: 22,804,775 (GRCm39) |
N144I |
probably damaging |
Het |
| Wwc2 |
T |
C |
8: 48,353,796 (GRCm39) |
T113A |
probably benign |
Het |
| Xpo5 |
A |
C |
17: 46,528,535 (GRCm39) |
E313D |
probably damaging |
Het |
| Zfp790 |
C |
T |
7: 29,529,192 (GRCm39) |
H626Y |
probably benign |
Het |
|
| Other mutations in Fancc |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00481:Fancc
|
APN |
13 |
63,548,059 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL00846:Fancc
|
APN |
13 |
63,488,270 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
IGL01404:Fancc
|
APN |
13 |
63,509,452 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02592:Fancc
|
APN |
13 |
63,508,011 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02625:Fancc
|
APN |
13 |
63,545,965 (GRCm39) |
missense |
probably damaging |
0.99 |
|
canneloni
|
UTSW |
13 |
63,479,637 (GRCm39) |
intron |
probably benign |
|
|
macaroni
|
UTSW |
13 |
63,469,679 (GRCm39) |
critical splice donor site |
probably null |
|
|
R0362:Fancc
|
UTSW |
13 |
63,545,970 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R0554:Fancc
|
UTSW |
13 |
63,465,283 (GRCm39) |
missense |
probably benign |
0.32 |
|
R0626:Fancc
|
UTSW |
13 |
63,465,205 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R0627:Fancc
|
UTSW |
13 |
63,465,292 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0726:Fancc
|
UTSW |
13 |
63,471,225 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0734:Fancc
|
UTSW |
13 |
63,479,656 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1363:Fancc
|
UTSW |
13 |
63,509,412 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1587:Fancc
|
UTSW |
13 |
63,488,246 (GRCm39) |
missense |
probably benign |
0.32 |
|
R1922:Fancc
|
UTSW |
13 |
63,478,381 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R4585:Fancc
|
UTSW |
13 |
63,495,378 (GRCm39) |
missense |
probably benign |
0.14 |
|
R4586:Fancc
|
UTSW |
13 |
63,495,378 (GRCm39) |
missense |
probably benign |
0.14 |
|
R4608:Fancc
|
UTSW |
13 |
63,479,637 (GRCm39) |
intron |
probably benign |
|
|
R5401:Fancc
|
UTSW |
13 |
63,550,767 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5561:Fancc
|
UTSW |
13 |
63,465,201 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R5699:Fancc
|
UTSW |
13 |
63,478,446 (GRCm39) |
splice site |
probably null |
|
|
R6200:Fancc
|
UTSW |
13 |
63,508,062 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6448:Fancc
|
UTSW |
13 |
63,488,242 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7562:Fancc
|
UTSW |
13 |
63,550,867 (GRCm39) |
splice site |
probably null |
|
|
R7615:Fancc
|
UTSW |
13 |
63,465,372 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R7805:Fancc
|
UTSW |
13 |
63,508,056 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R7864:Fancc
|
UTSW |
13 |
63,548,073 (GRCm39) |
nonsense |
probably null |
|
|
R8080:Fancc
|
UTSW |
13 |
63,550,837 (GRCm39) |
missense |
|
|
|
R8966:Fancc
|
UTSW |
13 |
63,495,285 (GRCm39) |
missense |
probably benign |
0.32 |
|
R8989:Fancc
|
UTSW |
13 |
63,548,090 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R9464:Fancc
|
UTSW |
13 |
63,550,769 (GRCm39) |
missense |
possibly damaging |
0.71 |
|
| Predicted Primers |
PCR Primer
(F):5'- AGGTCACAGGCTGTAAGCTC -3'
(R):5'- AAGAAGGGTCCACGTGTGTG -3'
Sequencing Primer
(F):5'- TGTAAGCTCAGCCCAGGTG -3'
(R):5'- GTTCCAGGTCTCCGCGAAATC -3'
|
| Posted On |
2016-06-21 |
Incidental Mutation