Mutagenetix > Incidental Mutation

Incidental Mutation 'R0453:Hdc'

39743

Institutional Source

Beutler Lab

Gene Symbol

Hdc

Ensembl Gene

ENSMUSG00000027360

Gene Name

histidine decarboxylase

Synonyms

Hdc-s, Hdc-a, Hdc-c, Hdc-e, L-histidine decarboxylase

MMRRC Submission

038653-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.862) question?

Stock #

R0453 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

126593667-126619299 bp(-) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

A to G at 126594951 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000028838 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028838]

AlphaFold

P23738

Predicted Effect

probably benign
Transcript: ENSMUST00000028838

SMART Domains

Protein: ENSMUSP00000028838
Gene: ENSMUSG00000027360

Domain	Start	End	E-Value	Type
low complexity region	6	15	N/A	INTRINSIC
Pfam:Pyridoxal_deC	43	421	2.2e-173	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124396

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.4%
20x: 93.6%

Validation Efficiency

99% (97/98)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the group II decarboxylase family and forms a homodimer that converts L-histidine to histamine in a pyridoxal phosphate dependent manner. Histamine regulates several physiologic processes, including neurotransmission, gastric acid secretion,inflamation, and smooth muscle tone.[provided by RefSeq, Aug 2010]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit abnormal mast cells, altered anxiety-related and nociceptive behavior, altered cognitive function, increased weight gain, visceral adiposity, increased amount of brown adipose tissue, impaired glucose tolerance, hyperinsulinemia, and hyperleptinemia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9930021J03Rik	T	C	19: 29,753,668 (GRCm38)	Y715C	probably damaging	Het
Acad10	T	A	5: 121,627,382 (GRCm38)	K843*	probably null	Het
Adam26b	T	C	8: 43,520,350 (GRCm38)	I538M	probably benign	Het
Adamtsl1	T	C	4: 86,232,615 (GRCm38)	Y337H	probably damaging	Het
Ak7	T	C	12: 105,716,048 (GRCm38)	M156T	probably damaging	Het
Aldh3a1	A	G	11: 61,215,512 (GRCm38)	M238V	probably benign	Het
Asic4	T	A	1: 75,473,511 (GRCm38)		probably benign	Het
AW551984	A	G	9: 39,600,641 (GRCm38)	S25P	probably damaging	Het
Bbs7	T	A	3: 36,607,669 (GRCm38)	Y127F	possibly damaging	Het
BC049730	T	A	7: 24,714,287 (GRCm38)	S243T	probably benign	Het
Bco1	G	A	8: 117,108,777 (GRCm38)	E156K	possibly damaging	Het
Becn1	T	C	11: 101,290,449 (GRCm38)	D342G	probably damaging	Het
Birc6	T	A	17: 74,649,754 (GRCm38)	I3575N	probably damaging	Het
Cc2d2a	A	T	5: 43,703,294 (GRCm38)	M522L	probably benign	Het
Cerkl	A	G	2: 79,342,451 (GRCm38)	F293L	probably benign	Het
Chil3	T	G	3: 106,148,905 (GRCm38)	N311T	probably benign	Het
Cpeb2	T	A	5: 43,285,713 (GRCm38)		probably benign	Het
Cpxm2	A	G	7: 132,128,405 (GRCm38)	S162P	probably damaging	Het
Cracr2b	A	C	7: 141,464,263 (GRCm38)	E136A	probably damaging	Het
Cyp2a4	T	A	7: 26,312,833 (GRCm38)	M347K	probably benign	Het
Dicer1	C	A	12: 104,702,630 (GRCm38)	R1264S	probably benign	Het
Dlgap1	T	A	17: 70,761,346 (GRCm38)	N609K	probably benign	Het
Dnhd1	A	G	7: 105,674,444 (GRCm38)	T641A	probably benign	Het
Egfl8	T	C	17: 34,614,882 (GRCm38)	Y74C	probably damaging	Het
Esyt1	A	G	10: 128,512,209 (GRCm38)	S901P	probably benign	Het
Fam83e	A	T	7: 45,723,948 (GRCm38)	D246V	probably damaging	Het
Galnt2	T	C	8: 124,338,584 (GRCm38)		probably benign	Het
Herc1	A	C	9: 66,399,772 (GRCm38)	Q958P	probably benign	Het
Iqcg	T	A	16: 33,049,843 (GRCm38)		probably benign	Het
Iqub	A	T	6: 24,450,830 (GRCm38)	F590Y	probably damaging	Het
Jak2	T	C	19: 29,311,838 (GRCm38)	I1130T	probably benign	Het
Kbtbd11	G	A	8: 15,027,499 (GRCm38)	A33T	probably benign	Het
Kcnip4	A	G	5: 48,509,712 (GRCm38)	L37P	probably damaging	Het
Klk6	A	G	7: 43,828,539 (GRCm38)	N112D	probably damaging	Het
Kmt2c	G	A	5: 25,354,747 (GRCm38)	T1011I	probably damaging	Het
Knl1	A	T	2: 119,068,388 (GRCm38)	K190M	probably damaging	Het
Lama3	T	A	18: 12,465,478 (GRCm38)	S981T	possibly damaging	Het
Lrrc18	T	C	14: 33,008,651 (GRCm38)	L49P	probably damaging	Het
Lrrc31	T	C	3: 30,687,525 (GRCm38)	E245G	probably damaging	Het
Macf1	T	C	4: 123,444,944 (GRCm38)	I2456M	probably benign	Het
Mcm6	T	A	1: 128,333,555 (GRCm38)	T771S	probably benign	Het
Met	A	C	6: 17,534,198 (GRCm38)	Y680S	possibly damaging	Het
Mixl1	T	A	1: 180,696,646 (GRCm38)	T123S	probably damaging	Het
Myh8	A	T	11: 67,292,905 (GRCm38)	I787F	probably benign	Het
Myocd	A	G	11: 65,196,225 (GRCm38)	F292S	probably damaging	Het
Neb	T	C	2: 52,313,890 (GRCm38)		probably null	Het
Nfe2l1	A	G	11: 96,827,368 (GRCm38)	S114P	probably damaging	Het
Nrxn2	T	C	19: 6,491,521 (GRCm38)	S986P	probably damaging	Het
Olfr1246	A	T	2: 89,590,751 (GRCm38)	Y121*	probably null	Het
Olfr1453	T	G	19: 13,027,931 (GRCm38)	T133P	probably damaging	Het
Olfr25	A	T	9: 38,330,171 (GRCm38)	T195S	probably benign	Het
Olfr745	T	C	14: 50,643,004 (GRCm38)	V241A	possibly damaging	Het
Olfr767	A	G	10: 129,079,771 (GRCm38)	F64S	probably damaging	Het
Olfr920	G	A	9: 38,756,129 (GRCm38)	G147D	probably damaging	Het
Oprl1	T	C	2: 181,718,734 (GRCm38)		probably null	Het
Panx2	T	A	15: 89,068,407 (GRCm38)	I359N	probably damaging	Het
Pik3c2b	T	A	1: 133,077,396 (GRCm38)	V545E	probably damaging	Het
Piwil4	T	C	9: 14,727,452 (GRCm38)	N259S	probably benign	Het
Plcxd2	A	T	16: 45,980,556 (GRCm38)	F102I	probably damaging	Het
Pld5	A	T	1: 176,089,956 (GRCm38)	M75K	possibly damaging	Het
Pmp22	T	A	11: 63,151,103 (GRCm38)		probably benign	Het
Polr2a	A	G	11: 69,741,019 (GRCm38)	S1074P	possibly damaging	Het
Pop1	T	A	15: 34,526,206 (GRCm38)	V649E	possibly damaging	Het
Prc1	A	G	7: 80,313,102 (GRCm38)	N548S	probably damaging	Het
Prss51	T	C	14: 64,097,139 (GRCm38)	L202P	probably damaging	Het
Rhpn1	T	C	15: 75,713,579 (GRCm38)	S576P	possibly damaging	Het
Rictor	A	G	15: 6,708,642 (GRCm38)	D20G	probably benign	Het
Rpl13a-ps1	A	T	19: 50,030,206 (GRCm38)	L177*	probably null	Het
Rpl23a-ps1	T	G	1: 45,981,927 (GRCm38)		noncoding transcript	Het
Saa2	A	G	7: 46,753,478 (GRCm38)	D51G	probably damaging	Het
Sec31a	A	T	5: 100,404,118 (GRCm38)		probably benign	Het
Secisbp2	G	A	13: 51,683,325 (GRCm38)	E841K	possibly damaging	Het
Serinc1	A	G	10: 57,517,210 (GRCm38)	Y437H	probably damaging	Het
Slc39a12	A	T	2: 14,435,681 (GRCm38)	H481L	probably benign	Het
Suz12	T	A	11: 80,030,033 (GRCm38)	N586K	probably damaging	Het
Synm	T	C	7: 67,736,882 (GRCm38)	Y344C	possibly damaging	Het
Tas2r104	A	G	6: 131,685,341 (GRCm38)	V135A	probably benign	Het
Tdrd9	T	C	12: 112,068,239 (GRCm38)	S1371P	probably benign	Het
Tg	T	A	15: 66,828,533 (GRCm38)	D893E	probably benign	Het
Thoc5	C	A	11: 4,918,217 (GRCm38)	D423E	possibly damaging	Het
Trim11	G	A	11: 58,990,535 (GRCm38)	R418H	probably damaging	Het
Trim52	T	G	14: 106,106,965 (GRCm38)	V19G	probably damaging	Het
Tuba4a	C	A	1: 75,215,858 (GRCm38)	V371L	probably damaging	Het
Ugt8a	A	G	3: 125,914,957 (GRCm38)	V168A	probably benign	Het
Ulk1	C	T	5: 110,791,085 (GRCm38)	G496R	probably damaging	Het
Usp40	A	G	1: 87,946,598 (GRCm38)	*1236Q	probably null	Het
Vmn2r100	C	A	17: 19,522,120 (GRCm38)	P252Q	possibly damaging	Het
Vmn2r24	A	G	6: 123,780,391 (GRCm38)		probably null	Het
Vmn2r53	A	G	7: 12,582,411 (GRCm38)	Y494H	probably damaging	Het
Vmn2r65	T	A	7: 84,946,234 (GRCm38)	D414V	probably benign	Het
Wdr26	A	T	1: 181,182,879 (GRCm38)	L519*	probably null	Het
Wnk1	A	G	6: 119,963,151 (GRCm38)	V173A	probably damaging	Het
Zfp217	C	T	2: 170,115,462 (GRCm38)	A539T	probably benign	Het
Zfp318	T	C	17: 46,396,708 (GRCm38)	S231P	probably damaging	Het
Zfp398	T	C	6: 47,865,848 (GRCm38)	V146A	probably benign	Het
Zfp410	T	C	12: 84,331,712 (GRCm38)	M270T	probably damaging	Het
Zfp445	A	T	9: 122,853,513 (GRCm38)	H454Q	possibly damaging	Het

Other mutations in Hdc

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00572:Hdc	APN	2	126,601,872 (GRCm38)	missense	probably benign	0.00
IGL01024:Hdc	APN	2	126,603,846 (GRCm38)	missense	probably benign	0.32
IGL01393:Hdc	APN	2	126,594,661 (GRCm38)	missense	probably benign	0.28
IGL01802:Hdc	APN	2	126,603,894 (GRCm38)	missense	probably benign	0.04
IGL01958:Hdc	APN	2	126,594,532 (GRCm38)	missense	possibly damaging	0.87
IGL02193:Hdc	APN	2	126,601,780 (GRCm38)	splice site	probably benign
IGL02494:Hdc	APN	2	126,594,121 (GRCm38)	missense	probably benign
IGL02696:Hdc	APN	2	126,594,300 (GRCm38)	missense	probably damaging	1.00
IGL02874:Hdc	APN	2	126,601,676 (GRCm38)	missense	probably benign	0.21
R0528:Hdc	UTSW	2	126,616,232 (GRCm38)	missense	probably benign	0.00
R1337:Hdc	UTSW	2	126,616,276 (GRCm38)	missense	probably benign
R1862:Hdc	UTSW	2	126,597,933 (GRCm38)	missense	probably benign	0.36
R1938:Hdc	UTSW	2	126,606,397 (GRCm38)	missense	possibly damaging	0.86
R1994:Hdc	UTSW	2	126,616,187 (GRCm38)	missense	probably damaging	1.00
R2230:Hdc	UTSW	2	126,594,018 (GRCm38)	missense	possibly damaging	0.65
R2257:Hdc	UTSW	2	126,616,080 (GRCm38)	splice site	probably null
R2921:Hdc	UTSW	2	126,593,990 (GRCm38)	missense	probably damaging	1.00
R2923:Hdc	UTSW	2	126,593,990 (GRCm38)	missense	probably damaging	1.00
R3620:Hdc	UTSW	2	126,616,267 (GRCm38)	missense	possibly damaging	0.86
R3621:Hdc	UTSW	2	126,616,267 (GRCm38)	missense	possibly damaging	0.86
R3914:Hdc	UTSW	2	126,603,006 (GRCm38)	missense	probably damaging	1.00
R4076:Hdc	UTSW	2	126,616,261 (GRCm38)	missense	possibly damaging	0.92
R4114:Hdc	UTSW	2	126,601,818 (GRCm38)	missense	probably benign	0.16
R4213:Hdc	UTSW	2	126,597,866 (GRCm38)	splice site	probably null
R4827:Hdc	UTSW	2	126,594,313 (GRCm38)	missense	probably benign
R4889:Hdc	UTSW	2	126,594,133 (GRCm38)	missense	probably benign	0.00
R5013:Hdc	UTSW	2	126,604,300 (GRCm38)	missense	probably benign	0.33
R5593:Hdc	UTSW	2	126,618,584 (GRCm38)	utr 5 prime	probably benign
R5604:Hdc	UTSW	2	126,594,663 (GRCm38)	missense	probably benign
R5637:Hdc	UTSW	2	126,616,189 (GRCm38)	missense	probably benign	0.02
R6211:Hdc	UTSW	2	126,593,977 (GRCm38)	missense	probably damaging	0.98
R6312:Hdc	UTSW	2	126,607,406 (GRCm38)	missense	possibly damaging	0.65
R7730:Hdc	UTSW	2	126,594,082 (GRCm38)	missense	possibly damaging	0.51
R7889:Hdc	UTSW	2	126,616,210 (GRCm38)	missense	probably damaging	1.00
R8328:Hdc	UTSW	2	126,601,883 (GRCm38)	missense	probably damaging	1.00
R8482:Hdc	UTSW	2	126,594,205 (GRCm38)	missense	probably benign
R8517:Hdc	UTSW	2	126,597,970 (GRCm38)	critical splice acceptor site	probably null
R9136:Hdc	UTSW	2	126,597,866 (GRCm38)	splice site	probably null
R9139:Hdc	UTSW	2	126,597,917 (GRCm38)	missense	probably damaging	1.00
R9208:Hdc	UTSW	2	126,594,680 (GRCm38)	missense	probably benign	0.32
R9515:Hdc	UTSW	2	126,616,229 (GRCm38)	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- TCCTCCTTGGTGGTAAACTGGGATG -3'
(R):5'- TTGAGACACAAGGTCTCTGGGTGG -3'

Sequencing Primer
(F):5'- CCCAGCATTTACTGGTCTGAAAG -3'
(R):5'- TGGGTGTGAGGTGACAGAG -3'

Posted On

2013-05-23