Incidental Mutation 'R5185:Rad21l'
ID397798
Institutional Source Beutler Lab
Gene Symbol Rad21l
Ensembl Gene ENSMUSG00000074704
Gene NameRAD21-like (S. pombe)
SynonymsGm14160
MMRRC Submission 042764-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R5185 (G1)
Quality Score225
Status Validated
Chromosome2
Chromosomal Location151645404-151668533 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to C at 151657462 bp
ZygosityHeterozygous
Amino Acid Change Aspartic acid to Glycine at position 270 (D270G)
Ref Sequence ENSEMBL: ENSMUSP00000094174 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000096439] [ENSMUST00000180195]
Predicted Effect probably benign
Transcript: ENSMUST00000096439
AA Change: D270G

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)
SMART Domains Protein: ENSMUSP00000094174
Gene: ENSMUSG00000074704
AA Change: D270G

DomainStartEndE-ValueType
Pfam:Rad21_Rec8_N 1 111 3.9e-43 PFAM
low complexity region 198 213 N/A INTRINSIC
low complexity region 275 299 N/A INTRINSIC
Pfam:Rad21_Rec8 493 546 1.1e-19 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000180195
AA Change: D273G

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
SMART Domains Protein: ENSMUSP00000136918
Gene: ENSMUSG00000074704
AA Change: D273G

DomainStartEndE-ValueType
Pfam:Rad21_Rec8_N 1 106 5.7e-40 PFAM
low complexity region 198 213 N/A INTRINSIC
low complexity region 278 302 N/A INTRINSIC
Pfam:Rad21_Rec8 496 549 1.3e-19 PFAM
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.3%
  • 20x: 95.4%
Validation Efficiency 95% (70/74)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit male infertility and reduced female fertility associated with abnormal meiosis and synaptonemal complex. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 67 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acsf2 T C 11: 94,562,911 Y408C probably damaging Het
Aox4 T C 1: 58,254,318 L943S probably damaging Het
Ap1g1 G A 8: 109,863,326 probably benign Het
Arsb T C 13: 93,794,159 S212P probably damaging Het
Arsi A G 18: 60,916,912 N289S probably damaging Het
Atp6v1h T A 1: 5,095,642 F72I probably damaging Het
Atxn7 T C 14: 14,090,063 I336T probably benign Het
Bak1 G A 17: 27,022,748 P65L possibly damaging Het
Bcl6 A T 16: 23,972,947 M219K possibly damaging Het
Brd3 T C 2: 27,462,448 K157E probably damaging Het
Ccdc171 T G 4: 83,663,655 S674A possibly damaging Het
Cfap43 A G 19: 47,780,394 I737T probably benign Het
Cul9 A T 17: 46,525,832 V1089D possibly damaging Het
Dffa C A 4: 149,117,430 A155E probably benign Het
Dnhd1 G A 7: 105,703,209 R2523Q probably damaging Het
Efcab12 T A 6: 115,823,490 M191L probably benign Het
Efl1 T C 7: 82,772,499 L1018P probably damaging Het
Fcho1 A G 8: 71,714,956 probably benign Het
Fndc3b T A 3: 27,457,070 T764S probably benign Het
Gm29125 T C 1: 80,384,231 noncoding transcript Het
Gm5108 A G 5: 67,944,610 probably benign Het
Gm9949 T G 18: 62,180,565 probably benign Het
Golgb1 T C 16: 36,875,141 probably benign Het
Gpd2 T C 2: 57,340,204 Y323H probably damaging Het
Grip1 T G 10: 119,931,259 D96E probably benign Het
Hmcn1 T C 1: 150,656,741 I3132V probably benign Het
Hsd17b1 T C 11: 101,080,198 W327R possibly damaging Het
Htra2 G A 6: 83,054,242 P62L probably benign Het
Kdr A T 5: 75,952,417 probably null Het
Kif14 T A 1: 136,527,469 C1626* probably null Het
Kmt2a A T 9: 44,820,246 probably benign Het
Krt15 T C 11: 100,133,433 T321A probably damaging Het
Lactbl1 A T 4: 136,631,045 H109L probably benign Het
Lilra6 T A 7: 3,914,636 H120L probably benign Het
Lpcat2 G A 8: 92,869,737 S134N probably benign Het
Mpp4 T C 1: 59,125,583 D465G probably benign Het
Naip2 A T 13: 100,189,351 D16E probably damaging Het
Nek5 C T 8: 22,083,381 A520T possibly damaging Het
Nfatc2 A G 2: 168,570,707 F132L possibly damaging Het
Nlrp3 C A 11: 59,565,084 T902N probably benign Het
Olfr1097 T C 2: 86,890,602 D191G probably benign Het
Olfr1230 A T 2: 89,296,387 H294Q probably benign Het
Olfr149 A T 9: 39,701,876 W298R probably benign Het
Olfr58 T C 9: 19,783,376 M81T probably damaging Het
Pcdhb16 T C 18: 37,480,089 S701P possibly damaging Het
Phf7 A G 14: 31,248,037 probably null Het
Plpp4 G A 7: 129,316,304 V68M probably damaging Het
Pnma2 A T 14: 66,916,129 M1L possibly damaging Het
Pnmal2 A T 7: 16,945,976 D295V probably damaging Het
Ralgapa2 C A 2: 146,388,486 probably null Het
Rasal3 A T 17: 32,396,790 L334Q probably damaging Het
Rfx4 G T 10: 84,863,250 R240L probably damaging Het
Rnf19b T A 4: 129,083,920 C642* probably null Het
Slc28a2 G A 2: 122,458,194 E594K probably benign Het
Spata31 G T 13: 64,917,526 W15L possibly damaging Het
Spink5 T C 18: 44,015,644 S925P probably damaging Het
Svep1 C T 4: 58,084,534 G1865S probably damaging Het
Tg T C 15: 66,773,474 L791P probably damaging Het
Thbs4 A C 13: 92,775,167 V247G probably damaging Het
Tpcn2 A T 7: 145,255,454 F705Y probably damaging Het
Try10 A T 6: 41,356,549 H76L probably damaging Het
Ttn C T 2: 76,939,221 V2695I probably damaging Het
Tut1 C A 19: 8,955,450 T49N probably benign Het
Vmn1r17 A G 6: 57,360,843 V130A probably benign Het
Xdh G A 17: 73,925,011 R235C probably damaging Het
Yipf4 A G 17: 74,492,475 D70G probably null Het
Zfp108 G T 7: 24,260,738 K251N probably benign Het
Other mutations in Rad21l
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00435:Rad21l APN 2 151653516 missense probably benign 0.04
IGL00815:Rad21l APN 2 151667989 missense probably damaging 1.00
IGL00847:Rad21l APN 2 151660715 missense probably benign 0.00
IGL01545:Rad21l APN 2 151655164 missense probably benign 0.00
IGL02983:Rad21l APN 2 151655120 missense probably damaging 1.00
IGL03001:Rad21l APN 2 151668469 missense probably damaging 1.00
3-1:Rad21l UTSW 2 151654647 missense possibly damaging 0.52
R0219:Rad21l UTSW 2 151654588 splice site probably benign
R0382:Rad21l UTSW 2 151645443 missense probably damaging 1.00
R0413:Rad21l UTSW 2 151651931 missense probably benign
R0511:Rad21l UTSW 2 151649069 splice site probably benign
R1555:Rad21l UTSW 2 151658428 missense probably benign 0.03
R1606:Rad21l UTSW 2 151654686 missense probably damaging 1.00
R1696:Rad21l UTSW 2 151668527 missense probably damaging 1.00
R1951:Rad21l UTSW 2 151655259 missense probably benign 0.04
R1999:Rad21l UTSW 2 151654701 critical splice acceptor site probably null
R2060:Rad21l UTSW 2 151645429 missense probably benign 0.21
R2068:Rad21l UTSW 2 151668007 missense probably damaging 1.00
R3037:Rad21l UTSW 2 151660780 missense probably damaging 1.00
R4805:Rad21l UTSW 2 151668007 missense probably damaging 1.00
R5388:Rad21l UTSW 2 151653483 missense probably benign
R5504:Rad21l UTSW 2 151668437 missense probably damaging 1.00
R5530:Rad21l UTSW 2 151657510 missense probably benign 0.00
R6113:Rad21l UTSW 2 151657478 missense probably damaging 0.98
R6233:Rad21l UTSW 2 151653542 missense probably benign
R7096:Rad21l UTSW 2 151667920 missense probably benign 0.31
R7337:Rad21l UTSW 2 151658445 missense probably damaging 1.00
R7822:Rad21l UTSW 2 151655125 missense probably benign
Z1088:Rad21l UTSW 2 151668019 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CGCACACCCATAAAGTGTATATCTG -3'
(R):5'- GCTAGCAGTGTGTCCTCAATTATTC -3'

Sequencing Primer
(F):5'- AAAGTGTATATCTGAGCCTCTTGCC -3'
(R):5'- GCAGTGTGTCCTCAATTATTCTTTAC -3'
Posted On2016-07-06