Mutagenetix > Incidental Mutation

Incidental Mutation 'R0453:Tdrd9'

39803

Institutional Source

Beutler Lab

Gene Symbol

Tdrd9

Ensembl Gene

ENSMUSG00000054003

Gene Name

tudor domain containing 9

Synonyms

MMRRC Submission

038653-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.166) question?

Stock #

R0453 (G1)

Quality Score

128

Status

Validated

Chromosome

Chromosomal Location

111971559-112068854 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 112068239 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 1371 (S1371P)

Ref Sequence

ENSEMBL: ENSMUSP00000078022 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000079009]

AlphaFold

Q14BI7

Predicted Effect

probably benign
Transcript: ENSMUST00000079009
AA Change: S1371P

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000078022
Gene: ENSMUSG00000054003
AA Change: S1371P

Domain	Start	End	E-Value	Type
low complexity region	29	40	N/A	INTRINSIC
low complexity region	70	81	N/A	INTRINSIC
DEXDc	132	327	5.64e-21	SMART
HELICc	404	502	3.22e-16	SMART
low complexity region	547	561	N/A	INTRINSIC
HA2	565	666	1.9e-20	SMART
TUDOR	944	1003	1.52e-7	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000191808

Predicted Effect

probably benign
Transcript: ENSMUST00000192125

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000193630

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.4%
20x: 93.6%

Validation Efficiency

99% (97/98)

MGI Phenotype

PHENOTYPE: Male homozygous mice are sterile, displaying small testis, arrest of male meiosis and abnormal spermatocyte morphology. Females are fertile. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9930021J03Rik	T	C	19: 29,753,668	Y715C	probably damaging	Het
Acad10	T	A	5: 121,627,382	K843*	probably null	Het
Adam26b	T	C	8: 43,520,350	I538M	probably benign	Het
Adamtsl1	T	C	4: 86,232,615	Y337H	probably damaging	Het
Ak7	T	C	12: 105,716,048	M156T	probably damaging	Het
Aldh3a1	A	G	11: 61,215,512	M238V	probably benign	Het
Asic4	T	A	1: 75,473,511		probably benign	Het
AW551984	A	G	9: 39,600,641	S25P	probably damaging	Het
Bbs7	T	A	3: 36,607,669	Y127F	possibly damaging	Het
BC049730	T	A	7: 24,714,287	S243T	probably benign	Het
Bco1	G	A	8: 117,108,777	E156K	possibly damaging	Het
Becn1	T	C	11: 101,290,449	D342G	probably damaging	Het
Birc6	T	A	17: 74,649,754	I3575N	probably damaging	Het
Cc2d2a	A	T	5: 43,703,294	M522L	probably benign	Het
Cerkl	A	G	2: 79,342,451	F293L	probably benign	Het
Chil3	T	G	3: 106,148,905	N311T	probably benign	Het
Cpeb2	T	A	5: 43,285,713		probably benign	Het
Cpxm2	A	G	7: 132,128,405	S162P	probably damaging	Het
Cracr2b	A	C	7: 141,464,263	E136A	probably damaging	Het
Cyp2a4	T	A	7: 26,312,833	M347K	probably benign	Het
Dicer1	C	A	12: 104,702,630	R1264S	probably benign	Het
Dlgap1	T	A	17: 70,761,346	N609K	probably benign	Het
Dnhd1	A	G	7: 105,674,444	T641A	probably benign	Het
Egfl8	T	C	17: 34,614,882	Y74C	probably damaging	Het
Esyt1	A	G	10: 128,512,209	S901P	probably benign	Het
Fam83e	A	T	7: 45,723,948	D246V	probably damaging	Het
Galnt2	T	C	8: 124,338,584		probably benign	Het
Hdc	A	G	2: 126,594,951		probably benign	Het
Herc1	A	C	9: 66,399,772	Q958P	probably benign	Het
Iqcg	T	A	16: 33,049,843		probably benign	Het
Iqub	A	T	6: 24,450,830	F590Y	probably damaging	Het
Jak2	T	C	19: 29,311,838	I1130T	probably benign	Het
Kbtbd11	G	A	8: 15,027,499	A33T	probably benign	Het
Kcnip4	A	G	5: 48,509,712	L37P	probably damaging	Het
Klk6	A	G	7: 43,828,539	N112D	probably damaging	Het
Kmt2c	G	A	5: 25,354,747	T1011I	probably damaging	Het
Knl1	A	T	2: 119,068,388	K190M	probably damaging	Het
Lama3	T	A	18: 12,465,478	S981T	possibly damaging	Het
Lrrc18	T	C	14: 33,008,651	L49P	probably damaging	Het
Lrrc31	T	C	3: 30,687,525	E245G	probably damaging	Het
Macf1	T	C	4: 123,444,944	I2456M	probably benign	Het
Mcm6	T	A	1: 128,333,555	T771S	probably benign	Het
Met	A	C	6: 17,534,198	Y680S	possibly damaging	Het
Mixl1	T	A	1: 180,696,646	T123S	probably damaging	Het
Myh8	A	T	11: 67,292,905	I787F	probably benign	Het
Myocd	A	G	11: 65,196,225	F292S	probably damaging	Het
Neb	T	C	2: 52,313,890		probably null	Het
Nfe2l1	A	G	11: 96,827,368	S114P	probably damaging	Het
Nrxn2	T	C	19: 6,491,521	S986P	probably damaging	Het
Olfr1246	A	T	2: 89,590,751	Y121*	probably null	Het
Olfr1453	T	G	19: 13,027,931	T133P	probably damaging	Het
Olfr25	A	T	9: 38,330,171	T195S	probably benign	Het
Olfr745	T	C	14: 50,643,004	V241A	possibly damaging	Het
Olfr767	A	G	10: 129,079,771	F64S	probably damaging	Het
Olfr920	G	A	9: 38,756,129	G147D	probably damaging	Het
Oprl1	T	C	2: 181,718,734		probably null	Het
Panx2	T	A	15: 89,068,407	I359N	probably damaging	Het
Pik3c2b	T	A	1: 133,077,396	V545E	probably damaging	Het
Piwil4	T	C	9: 14,727,452	N259S	probably benign	Het
Plcxd2	A	T	16: 45,980,556	F102I	probably damaging	Het
Pld5	A	T	1: 176,089,956	M75K	possibly damaging	Het
Pmp22	T	A	11: 63,151,103		probably benign	Het
Polr2a	A	G	11: 69,741,019	S1074P	possibly damaging	Het
Pop1	T	A	15: 34,526,206	V649E	possibly damaging	Het
Prc1	A	G	7: 80,313,102	N548S	probably damaging	Het
Prss51	T	C	14: 64,097,139	L202P	probably damaging	Het
Rhpn1	T	C	15: 75,713,579	S576P	possibly damaging	Het
Rictor	A	G	15: 6,708,642	D20G	probably benign	Het
Rpl13a-ps1	A	T	19: 50,030,206	L177*	probably null	Het
Rpl23a-ps1	T	G	1: 45,981,927		noncoding transcript	Het
Saa2	A	G	7: 46,753,478	D51G	probably damaging	Het
Sec31a	A	T	5: 100,404,118		probably benign	Het
Secisbp2	G	A	13: 51,683,325	E841K	possibly damaging	Het
Serinc1	A	G	10: 57,517,210	Y437H	probably damaging	Het
Slc39a12	A	T	2: 14,435,681	H481L	probably benign	Het
Suz12	T	A	11: 80,030,033	N586K	probably damaging	Het
Synm	T	C	7: 67,736,882	Y344C	possibly damaging	Het
Tas2r104	A	G	6: 131,685,341	V135A	probably benign	Het
Tg	T	A	15: 66,828,533	D893E	probably benign	Het
Thoc5	C	A	11: 4,918,217	D423E	possibly damaging	Het
Trim11	G	A	11: 58,990,535	R418H	probably damaging	Het
Trim52	T	G	14: 106,106,965	V19G	probably damaging	Het
Tuba4a	C	A	1: 75,215,858	V371L	probably damaging	Het
Ugt8a	A	G	3: 125,914,957	V168A	probably benign	Het
Ulk1	C	T	5: 110,791,085	G496R	probably damaging	Het
Usp40	A	G	1: 87,946,598	*1236Q	probably null	Het
Vmn2r100	C	A	17: 19,522,120	P252Q	possibly damaging	Het
Vmn2r24	A	G	6: 123,780,391		probably null	Het
Vmn2r53	A	G	7: 12,582,411	Y494H	probably damaging	Het
Vmn2r65	T	A	7: 84,946,234	D414V	probably benign	Het
Wdr26	A	T	1: 181,182,879	L519*	probably null	Het
Wnk1	A	G	6: 119,963,151	V173A	probably damaging	Het
Zfp217	C	T	2: 170,115,462	A539T	probably benign	Het
Zfp318	T	C	17: 46,396,708	S231P	probably damaging	Het
Zfp398	T	C	6: 47,865,848	V146A	probably benign	Het
Zfp410	T	C	12: 84,331,712	M270T	probably damaging	Het
Zfp445	A	T	9: 122,853,513	H454Q	possibly damaging	Het

Other mutations in Tdrd9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01339:Tdrd9	APN	12	112040434	missense	probably damaging	1.00
IGL01373:Tdrd9	APN	12	112040434	missense	probably damaging	1.00
IGL01542:Tdrd9	APN	12	112046989	missense	possibly damaging	0.94
IGL02967:Tdrd9	APN	12	111992488	missense	possibly damaging	0.50
IGL03063:Tdrd9	APN	12	112044299	missense	probably benign	0.00
IGL03107:Tdrd9	APN	12	112042840	missense	probably damaging	0.98
R0433:Tdrd9	UTSW	12	112025581	nonsense	probably null
R0655:Tdrd9	UTSW	12	112040465	missense	probably damaging	1.00
R0666:Tdrd9	UTSW	12	112007580	intron	probably benign
R1073:Tdrd9	UTSW	12	112023259	missense	probably damaging	1.00
R1280:Tdrd9	UTSW	12	112039408	missense	probably damaging	1.00
R1386:Tdrd9	UTSW	12	112044804	missense	probably benign	0.21
R1521:Tdrd9	UTSW	12	112036410	missense	probably damaging	1.00
R1601:Tdrd9	UTSW	12	112023253	nonsense	probably null
R1651:Tdrd9	UTSW	12	112024706	missense	probably damaging	0.97
R1715:Tdrd9	UTSW	12	112036439	missense	possibly damaging	0.62
R1854:Tdrd9	UTSW	12	112044812	missense	probably damaging	1.00
R1905:Tdrd9	UTSW	12	112063627	splice site	probably benign
R2386:Tdrd9	UTSW	12	112015900	missense	probably damaging	1.00
R2863:Tdrd9	UTSW	12	112031261	missense	probably benign
R2915:Tdrd9	UTSW	12	112040461	missense	probably damaging	1.00
R2958:Tdrd9	UTSW	12	112041672	missense	probably damaging	0.97
R4033:Tdrd9	UTSW	12	111992539	missense	possibly damaging	0.58
R4087:Tdrd9	UTSW	12	112013486	nonsense	probably null
R4237:Tdrd9	UTSW	12	112067625	nonsense	probably null
R4482:Tdrd9	UTSW	12	112014501	critical splice donor site	probably null
R4501:Tdrd9	UTSW	12	112042809	missense	probably benign	0.00
R4502:Tdrd9	UTSW	12	111993825	missense	probably damaging	1.00
R4715:Tdrd9	UTSW	12	112041689	missense	probably benign	0.00
R4803:Tdrd9	UTSW	12	111996835	nonsense	probably null
R5218:Tdrd9	UTSW	12	112063475	intron	probably benign
R5275:Tdrd9	UTSW	12	112051912	nonsense	probably null
R5295:Tdrd9	UTSW	12	112051912	nonsense	probably null
R5301:Tdrd9	UTSW	12	112036529	critical splice donor site	probably null
R5339:Tdrd9	UTSW	12	112027122	missense	probably damaging	1.00
R5500:Tdrd9	UTSW	12	112023268	missense	probably benign	0.02
R5573:Tdrd9	UTSW	12	111997902	splice site	probably null
R5590:Tdrd9	UTSW	12	112051980	missense	probably benign	0.01
R5891:Tdrd9	UTSW	12	112042719	missense	probably damaging	1.00
R6056:Tdrd9	UTSW	12	111985041	missense	probably damaging	1.00
R6057:Tdrd9	UTSW	12	112013286	missense	possibly damaging	0.85
R6125:Tdrd9	UTSW	12	112068198	missense	possibly damaging	0.89
R6254:Tdrd9	UTSW	12	112025900	splice site	probably null
R6335:Tdrd9	UTSW	12	112041752	critical splice donor site	probably null
R6345:Tdrd9	UTSW	12	112034608	missense	probably damaging	0.99
R6792:Tdrd9	UTSW	12	112027113	missense	probably benign	0.01
R6956:Tdrd9	UTSW	12	112036354	splice site	probably benign
R6987:Tdrd9	UTSW	12	112025593	missense	possibly damaging	0.82
R7090:Tdrd9	UTSW	12	111992470	missense	probably benign
R7158:Tdrd9	UTSW	12	112036366	missense	probably benign	0.08
R7220:Tdrd9	UTSW	12	112014454	missense	probably damaging	1.00
R7478:Tdrd9	UTSW	12	111985042	missense	probably damaging	1.00
R7489:Tdrd9	UTSW	12	112067637	missense	probably benign	0.00
R7751:Tdrd9	UTSW	12	111992548	missense	probably benign	0.09
R7809:Tdrd9	UTSW	12	112032721	missense	probably damaging	0.99
R7844:Tdrd9	UTSW	12	111997952	missense	possibly damaging	0.63
R7854:Tdrd9	UTSW	12	112046961	missense	probably benign	0.00
R7903:Tdrd9	UTSW	12	112051976	missense	possibly damaging	0.95
R7938:Tdrd9	UTSW	12	112031215	missense	possibly damaging	0.86
R8018:Tdrd9	UTSW	12	112032746	missense	probably benign	0.12
R8018:Tdrd9	UTSW	12	112044388	missense	probably damaging	0.99
R8090:Tdrd9	UTSW	12	112015935	missense	probably damaging	1.00
R8157:Tdrd9	UTSW	12	111985066	missense	probably benign	0.44
R8198:Tdrd9	UTSW	12	112040429	missense	probably damaging	1.00
R8203:Tdrd9	UTSW	12	112025630	missense	probably damaging	1.00
R8512:Tdrd9	UTSW	12	112046193	missense	probably benign
R8721:Tdrd9	UTSW	12	112036455	missense	probably damaging	1.00
R8889:Tdrd9	UTSW	12	112013284	missense	probably benign	0.07
R8892:Tdrd9	UTSW	12	112013284	missense	probably benign	0.07
R9276:Tdrd9	UTSW	12	112014501	critical splice donor site	probably null
R9459:Tdrd9	UTSW	12	112025573	missense	probably damaging	1.00
R9484:Tdrd9	UTSW	12	112046250	missense	probably damaging	0.97
R9657:Tdrd9	UTSW	12	112036390	missense	possibly damaging	0.50
R9745:Tdrd9	UTSW	12	112042696	missense	probably damaging	0.99
X0018:Tdrd9	UTSW	12	112039329	missense	probably benign	0.24
Z1177:Tdrd9	UTSW	12	111971654	missense	probably benign	0.08
Z1177:Tdrd9	UTSW	12	111993891	missense	probably damaging	0.96
Z1177:Tdrd9	UTSW	12	112015921	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CGTCCATGTCCGTGAGCACATAATG -3'
(R):5'- ACAAACACGCTCTGGATCTTGTCTC -3'

Sequencing Primer
(F):5'- GTCCGTGAGCACATAATGATCTG -3'
(R):5'- GCCAAGTATTTAATACTGTGACCCC -3'

Posted On

2013-05-23