Mutagenetix > Incidental Mutation

Incidental Mutation 'R0455:Tarbp1'

39959

Institutional Source

Beutler Lab

Gene Symbol

Tarbp1

Ensembl Gene

ENSMUSG00000090290

Gene Name

TAR RNA binding protein 1

Synonyms

Gm17296

MMRRC Submission

038655-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0455 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

126425329-126475065 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 126440873 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Threonine at position 1067 (A1067T)

Ref Sequence

ENSEMBL: ENSMUSP00000129815 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000170518]

AlphaFold

E9Q368

Predicted Effect

probably benign
Transcript: ENSMUST00000170518
AA Change: A1067T

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000129815
Gene: ENSMUSG00000090290
AA Change: A1067T

Domain	Start	End	E-Value	Type
low complexity region	17	31	N/A	INTRINSIC
low complexity region	47	57	N/A	INTRINSIC
low complexity region	77	97	N/A	INTRINSIC
low complexity region	112	127	N/A	INTRINSIC
low complexity region	195	207	N/A	INTRINSIC
SCOP:d1gw5a_	1059	1260	3e-3	SMART
Pfam:SpoU_methylase	1421	1564	2.2e-32	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.0%
3x: 98.1%
10x: 95.7%
20x: 90.8%

Validation Efficiency

100% (56/56)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] HIV-1, the causative agent of acquired immunodeficiency syndrome (AIDS), contains an RNA genome that produces a chromosomally integrated DNA during the replicative cycle. Activation of HIV-1 gene expression by the transactivator Tat is dependent on an RNA regulatory element (TAR) located downstream of the transcription initiation site. This element forms a stable stem-loop structure and can be bound by either the protein encoded by this gene or by RNA polymerase II. This protein may act to disengage RNA polymerase II from TAR during transcriptional elongation. Alternatively spliced transcripts of this gene may exist, but their full-length natures have not been determined. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921539E11Rik	C	T	4: 103,230,983	G342D	possibly damaging	Het
Acvr2b	C	T	9: 119,432,609	R399W	probably damaging	Het
AI464131	G	A	4: 41,499,538	R31*	probably null	Het
Atf6	A	G	1: 170,834,923	V256A	probably benign	Het
Atp2b4	A	T	1: 133,728,716	I732N	probably damaging	Het
C1qtnf9	A	C	14: 60,772,371	Q25H	probably damaging	Het
Ccdc6	T	A	10: 70,142,571		probably benign	Het
Cds2	T	C	2: 132,285,967		probably null	Het
Chdh	A	G	14: 30,034,646	Y343C	probably damaging	Het
Col5a2	T	C	1: 45,382,102		probably benign	Het
Cts3	G	A	13: 61,568,210		probably benign	Het
Cyfip1	T	A	7: 55,892,054	D362E	probably benign	Het
Dsg1b	T	A	18: 20,396,025	S273T	probably benign	Het
Dysf	A	T	6: 84,140,667	H1274L	probably benign	Het
Eva1c	T	C	16: 90,876,098	S187P	probably benign	Het
Fam126b	T	C	1: 58,534,479		probably benign	Het
Fam13b	G	A	18: 34,445,528		probably benign	Het
Fam172a	T	A	13: 77,834,713		probably benign	Het
Fbn2	C	T	18: 58,035,336	G2310S	probably damaging	Het
Fcna	T	C	2: 25,625,508	Y183C	probably damaging	Het
Fnta	T	C	8: 26,001,028	T263A	probably benign	Het
Gm94	T	C	18: 43,781,244	D83G	possibly damaging	Het
Gnal	C	T	18: 67,135,649		probably benign	Het
Grb7	T	G	11: 98,452,188	S244A	probably benign	Het
Grm3	T	C	5: 9,512,477	T458A	probably benign	Het
Hdac2	C	T	10: 36,991,836	R193C	probably damaging	Het
Ighmbp2	T	C	19: 3,265,072	R783G	probably benign	Het
Inpp5j	G	T	11: 3,503,122	L43I	possibly damaging	Het
Itga11	A	T	9: 62,696,961	T44S	probably damaging	Het
Itsn1	C	T	16: 91,868,148		probably benign	Het
Kdm6b	G	T	11: 69,406,996	C233*	probably null	Het
Lamb3	T	C	1: 193,343,392	L1130P	probably damaging	Het
Lrch3	T	C	16: 32,986,880	F508L	probably damaging	Het
Lrrd1	T	A	5: 3,866,425	V814E	probably benign	Het
Megf10	C	T	18: 57,252,982	P356S	probably benign	Het
Naip1	A	T	13: 100,423,219	D1092E	probably benign	Het
Nus1	T	A	10: 52,430,094	V42E	probably damaging	Het
Olfr435	A	C	6: 43,202,072	M143L	probably benign	Het
Olfr739	A	G	14: 50,424,902	I128V	possibly damaging	Het
Padi3	T	C	4: 140,795,713	N306S	probably damaging	Het
Pex13	T	C	11: 23,655,949	S94G	probably benign	Het
Ppm1h	G	T	10: 122,802,324	Q166H	probably benign	Het
Ptafr	A	T	4: 132,580,085	Y262F	probably benign	Het
Rabgap1	T	A	2: 37,487,120	D321E	probably damaging	Het
Samsn1	C	T	16: 75,945,225		noncoding transcript	Het
Scarb1	T	C	5: 125,289,681	N63D	probably damaging	Het
Serpinb7	T	C	1: 107,451,610	I249T	possibly damaging	Het
Srpr	A	G	9: 35,214,981	K490R	probably benign	Het
Sycn	A	G	7: 28,540,973	N22D	probably benign	Het
Tex14	A	G	11: 87,514,305	D681G	possibly damaging	Het
Usp34	C	T	11: 23,446,741		probably benign	Het
Vmn2r107	T	C	17: 20,374,823		probably benign	Het
Vwde	A	T	6: 13,187,529	M653K	probably benign	Het
Wrap73	T	A	4: 154,148,743	S125T	possibly damaging	Het

Other mutations in Tarbp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00985:Tarbp1	APN	8	126459161	missense	probably damaging	1.00
IGL01419:Tarbp1	APN	8	126428155	missense	probably benign	0.03
IGL01475:Tarbp1	APN	8	126433962	missense	probably benign	0.03
IGL01688:Tarbp1	APN	8	126447551	missense	probably damaging	1.00
IGL01772:Tarbp1	APN	8	126447231	splice site	probably benign
IGL02402:Tarbp1	APN	8	126450828	splice site	probably benign
IGL02899:Tarbp1	APN	8	126453844	missense	probably damaging	0.96
IGL03006:Tarbp1	APN	8	126444142	missense	probably damaging	1.00
IGL03273:Tarbp1	APN	8	126453835	missense	probably damaging	1.00
PIT4280001:Tarbp1	UTSW	8	126430847	missense	probably damaging	0.96
R0048:Tarbp1	UTSW	8	126447530	missense	probably damaging	1.00
R0309:Tarbp1	UTSW	8	126438928	splice site	probably benign
R0383:Tarbp1	UTSW	8	126447484	missense	probably benign	0.00
R0738:Tarbp1	UTSW	8	126438801	critical splice donor site	probably null
R1345:Tarbp1	UTSW	8	126448330	missense	probably benign	0.03
R1370:Tarbp1	UTSW	8	126448330	missense	probably benign	0.03
R1617:Tarbp1	UTSW	8	126444268	missense	possibly damaging	0.47
R1628:Tarbp1	UTSW	8	126430860	missense	possibly damaging	0.78
R1702:Tarbp1	UTSW	8	126428218	missense	probably damaging	1.00
R1873:Tarbp1	UTSW	8	126447047	missense	probably damaging	1.00
R2018:Tarbp1	UTSW	8	126428114	missense	probably damaging	1.00
R2019:Tarbp1	UTSW	8	126428114	missense	probably damaging	1.00
R2060:Tarbp1	UTSW	8	126447594	splice site	probably null
R2877:Tarbp1	UTSW	8	126427832	missense	probably damaging	1.00
R3008:Tarbp1	UTSW	8	126447421	missense	possibly damaging	0.46
R3875:Tarbp1	UTSW	8	126438799	splice site	probably benign
R3905:Tarbp1	UTSW	8	126428152	missense	probably damaging	1.00
R3923:Tarbp1	UTSW	8	126440771	missense	probably benign	0.00
R4420:Tarbp1	UTSW	8	126447080	missense	possibly damaging	0.59
R4570:Tarbp1	UTSW	8	126452233	missense	probably benign	0.00
R4610:Tarbp1	UTSW	8	126474330	missense	probably damaging	1.00
R4649:Tarbp1	UTSW	8	126447195	missense	probably damaging	0.96
R4802:Tarbp1	UTSW	8	126474889	missense	possibly damaging	0.75
R4951:Tarbp1	UTSW	8	126447445	missense	possibly damaging	0.94
R4953:Tarbp1	UTSW	8	126447445	missense	possibly damaging	0.94
R5254:Tarbp1	UTSW	8	126467156	missense	probably damaging	0.96
R5255:Tarbp1	UTSW	8	126428970	missense	probably benign	0.16
R5638:Tarbp1	UTSW	8	126450686	missense	probably damaging	1.00
R5696:Tarbp1	UTSW	8	126447340	missense	probably damaging	0.98
R5707:Tarbp1	UTSW	8	126467144	missense	probably damaging	1.00
R5896:Tarbp1	UTSW	8	126452928	missense	probably benign	0.05
R6087:Tarbp1	UTSW	8	126428970	missense	probably benign	0.00
R6117:Tarbp1	UTSW	8	126427541	missense	probably benign	0.00
R6132:Tarbp1	UTSW	8	126434809	missense	probably benign	0.17
R6168:Tarbp1	UTSW	8	126448405	missense	possibly damaging	0.89
R6419:Tarbp1	UTSW	8	126459044	missense	possibly damaging	0.95
R6482:Tarbp1	UTSW	8	126450695	missense	probably benign	0.01
R6766:Tarbp1	UTSW	8	126447400	missense	probably benign	0.41
R6775:Tarbp1	UTSW	8	126436829	missense	probably benign	0.16
R6960:Tarbp1	UTSW	8	126429039	missense	possibly damaging	0.88
R7054:Tarbp1	UTSW	8	126474495	missense	possibly damaging	0.85
R7068:Tarbp1	UTSW	8	126427034	missense	probably damaging	1.00
R7454:Tarbp1	UTSW	8	126457677	missense	probably benign	0.19
R7519:Tarbp1	UTSW	8	126433900	missense	possibly damaging	0.87
R7760:Tarbp1	UTSW	8	126452807	missense	not run
R7837:Tarbp1	UTSW	8	126474561	missense	probably benign	0.00
R7882:Tarbp1	UTSW	8	126456493	missense	probably damaging	1.00
R7982:Tarbp1	UTSW	8	126444301	missense	probably damaging	1.00
R8166:Tarbp1	UTSW	8	126427128	missense	possibly damaging	0.79
R8517:Tarbp1	UTSW	8	126444195	missense	probably benign	0.29
R8838:Tarbp1	UTSW	8	126450830	splice site	probably benign
R8880:Tarbp1	UTSW	8	126471305	missense	probably damaging	1.00
R9061:Tarbp1	UTSW	8	126447141	missense	probably damaging	1.00
R9123:Tarbp1	UTSW	8	126447463	missense	possibly damaging	0.63
R9125:Tarbp1	UTSW	8	126447463	missense	possibly damaging	0.63
R9364:Tarbp1	UTSW	8	126450723	missense	probably benign	0.01
R9474:Tarbp1	UTSW	8	126429040	missense	probably benign	0.44
R9670:Tarbp1	UTSW	8	126456523	missense	probably null	1.00

Predicted Primers

PCR Primer
(F):5'- TCGAAGCAGGATAAAGGCTCCTCC -3'
(R):5'- CAGATGGGCAGACATTCAGAGCAC -3'

Sequencing Primer
(F):5'- GGATAAAGGCTCCTCCTTACC -3'
(R):5'- tgtgtgtgtgtctgtgtctg -3'

Posted On

2013-05-23