Incidental Mutation 'R5177:Hmgxb3'
ID 399664
Institutional Source Beutler Lab
Gene Symbol Hmgxb3
Ensembl Gene ENSMUSG00000024622
Gene Name HMG box domain containing 3
Synonyms 2510002C16Rik, A630042L21Rik
MMRRC Submission 042757-MU
Accession Numbers
Essential gene? Possibly essential (E-score: 0.749) question?
Stock # R5177 (G1)
Quality Score 225
Status Validated
Chromosome 18
Chromosomal Location 61264349-61310122 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 61305266 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Lysine to Glutamic Acid at position 31 (K31E)
Ref Sequence ENSEMBL: ENSMUSP00000089498 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000091884]
AlphaFold Q6AXF8
Predicted Effect probably damaging
Transcript: ENSMUST00000091884
AA Change: K31E

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000089498
Gene: ENSMUSG00000024622
AA Change: K31E

DomainStartEndE-ValueType
HMG 40 110 6.8e-15 SMART
low complexity region 182 194 N/A INTRINSIC
internal_repeat_1 307 336 1.98e-9 PROSPERO
internal_repeat_1 583 612 1.98e-9 PROSPERO
low complexity region 817 830 N/A INTRINSIC
low complexity region 966 977 N/A INTRINSIC
low complexity region 1239 1254 N/A INTRINSIC
Meta Mutation Damage Score 0.0760 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.0%
  • 20x: 94.5%
Validation Efficiency 97% (71/73)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is one of the non-canonical high mobility group (HMG) genes. The encoded protein contains an HMG-box domain found in DNA binding proteins such as transcription factors and chromosomal proteins. [provided by RefSeq, Aug 2011]
Allele List at MGI
Other mutations in this stock
Total: 67 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcb11 C T 2: 69,115,639 (GRCm39) R575Q probably damaging Het
Arhgap22 T G 14: 33,088,650 (GRCm39) V377G probably benign Het
Asic4 T C 1: 75,427,483 (GRCm39) I3T probably damaging Het
Atp2b4 T C 1: 133,656,506 (GRCm39) T715A probably benign Het
Bltp3a T C 17: 28,103,992 (GRCm39) L464P possibly damaging Het
Ccdc180 A T 4: 45,917,508 (GRCm39) H283L probably damaging Het
Cfap91 A G 16: 38,152,683 (GRCm39) S176P probably benign Het
Cfb A G 17: 35,078,002 (GRCm39) V976A probably damaging Het
Cltc T C 11: 86,595,989 (GRCm39) T1250A probably damaging Het
Cylc2 T C 4: 51,228,587 (GRCm39) probably benign Het
Dcbld1 T A 10: 52,180,730 (GRCm39) D131E probably damaging Het
Dmxl1 T C 18: 50,026,651 (GRCm39) S1920P probably damaging Het
Dnajc13 G A 9: 104,108,185 (GRCm39) H197Y probably benign Het
Dpy19l1 C T 9: 24,349,924 (GRCm39) probably null Het
Ears2 A G 7: 121,643,683 (GRCm39) probably benign Het
Epgn A C 5: 91,176,136 (GRCm39) probably benign Het
Ern1 T C 11: 106,302,601 (GRCm39) T418A probably benign Het
F12 G A 13: 55,567,981 (GRCm39) P476S probably benign Het
Gal3st2c C T 1: 93,936,930 (GRCm39) Q292* probably null Het
Galnt7 C A 8: 58,037,061 (GRCm39) Q109H possibly damaging Het
Gimap1 G T 6: 48,720,032 (GRCm39) G215W probably damaging Het
Gm28042 T A 2: 119,872,082 (GRCm39) probably null Het
Gm5414 A G 15: 101,534,252 (GRCm39) I284T possibly damaging Het
Hddc3 A G 7: 79,992,914 (GRCm39) E10G probably damaging Het
Hspg2 A C 4: 137,246,083 (GRCm39) Y989S probably damaging Het
Kif12 G A 4: 63,086,141 (GRCm39) T402M probably benign Het
Klhdc4 A T 8: 122,540,529 (GRCm39) L115* probably null Het
Lama2 C T 10: 27,066,699 (GRCm39) V1061M possibly damaging Het
Llgl1 C T 11: 60,602,833 (GRCm39) T836I possibly damaging Het
Map4k4 A G 1: 40,025,922 (GRCm39) D304G probably damaging Het
Matn2 A G 15: 34,433,660 (GRCm39) Q915R possibly damaging Het
Myo18a A G 11: 77,755,668 (GRCm39) probably benign Het
Myorg C A 4: 41,498,407 (GRCm39) E408* probably null Het
Nbn A T 4: 15,965,132 (GRCm39) probably null Het
Nek8 G A 11: 78,061,297 (GRCm39) Q383* probably null Het
Nme7 T G 1: 164,208,245 (GRCm39) Y304* probably null Het
Nol8 A T 13: 49,814,588 (GRCm39) H214L probably benign Het
Nostrin A T 2: 69,006,098 (GRCm39) I261F possibly damaging Het
Oprk1 T G 1: 5,672,897 (GRCm39) C345G probably damaging Het
Or13a18 A G 7: 140,190,102 (GRCm39) T8A probably benign Het
Or52j3 A T 7: 102,836,710 (GRCm39) I301L probably benign Het
Polrmt T C 10: 79,573,310 (GRCm39) S998G probably benign Het
Ppp1r12c T A 7: 4,487,495 (GRCm39) R393* probably null Het
Prpf3 T A 3: 95,757,036 (GRCm39) probably benign Het
Rabl6 T C 2: 25,475,385 (GRCm39) M563V probably benign Het
Rasa2 C A 9: 96,426,844 (GRCm39) E775* probably null Het
Rc3h1 G T 1: 160,779,222 (GRCm39) V552L probably damaging Het
Rhot1 A T 11: 80,137,592 (GRCm39) N365Y possibly damaging Het
Rimbp3 G A 16: 17,027,781 (GRCm39) V402M possibly damaging Het
Rusc2 A T 4: 43,421,805 (GRCm39) probably null Het
Slc25a11 T C 11: 70,536,643 (GRCm39) E141G probably damaging Het
Slc34a1 A T 13: 55,548,975 (GRCm39) I142F probably damaging Het
Socs6 A C 18: 88,887,504 (GRCm39) Y470* probably null Het
Sox12 A T 2: 152,239,098 (GRCm39) L174Q unknown Het
Srl A G 16: 4,314,267 (GRCm39) probably null Het
Tacc1 A T 8: 25,691,237 (GRCm39) V22E probably damaging Het
Thsd7a A T 6: 12,379,582 (GRCm39) C947* probably null Het
Tlr12 A C 4: 128,512,169 (GRCm39) V27G probably damaging Het
Tmprss4 C A 9: 45,085,260 (GRCm39) V398L probably benign Het
Trip6 T C 5: 137,310,434 (GRCm39) D270G probably damaging Het
Uba5 T G 9: 103,926,497 (GRCm39) N355T probably benign Het
Ubr5 A G 15: 38,006,761 (GRCm39) Y1171H probably benign Het
Vmn2r57 A G 7: 41,049,664 (GRCm39) I695T probably benign Het
Vmn2r68 T A 7: 84,871,199 (GRCm39) I695L probably damaging Het
Vmn2r79 T A 7: 86,651,177 (GRCm39) M192K probably damaging Het
Vps16 G T 2: 130,285,288 (GRCm39) E782* probably null Het
Zfp783 A G 6: 47,923,737 (GRCm39) noncoding transcript Het
Other mutations in Hmgxb3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00594:Hmgxb3 APN 18 61,290,811 (GRCm39) missense probably benign 0.00
IGL01325:Hmgxb3 APN 18 61,267,078 (GRCm39) missense probably damaging 1.00
IGL01364:Hmgxb3 APN 18 61,279,506 (GRCm39) missense probably damaging 0.96
IGL02160:Hmgxb3 APN 18 61,304,308 (GRCm39) missense probably damaging 1.00
IGL02271:Hmgxb3 APN 18 61,265,285 (GRCm39) missense probably damaging 1.00
IGL02755:Hmgxb3 APN 18 61,305,260 (GRCm39) missense probably damaging 1.00
R0309:Hmgxb3 UTSW 18 61,288,200 (GRCm39) splice site probably benign
R0828:Hmgxb3 UTSW 18 61,304,426 (GRCm39) missense probably damaging 1.00
R1276:Hmgxb3 UTSW 18 61,298,576 (GRCm39) missense probably benign 0.04
R1429:Hmgxb3 UTSW 18 61,283,505 (GRCm39) missense probably damaging 0.98
R1491:Hmgxb3 UTSW 18 61,266,980 (GRCm39) missense probably benign 0.04
R1675:Hmgxb3 UTSW 18 61,268,631 (GRCm39) missense probably damaging 1.00
R1886:Hmgxb3 UTSW 18 61,270,473 (GRCm39) critical splice donor site probably null
R1887:Hmgxb3 UTSW 18 61,270,473 (GRCm39) critical splice donor site probably null
R2070:Hmgxb3 UTSW 18 61,304,431 (GRCm39) missense probably damaging 1.00
R2084:Hmgxb3 UTSW 18 61,288,095 (GRCm39) splice site probably benign
R2110:Hmgxb3 UTSW 18 61,288,458 (GRCm39) missense possibly damaging 0.54
R2112:Hmgxb3 UTSW 18 61,288,458 (GRCm39) missense possibly damaging 0.54
R2149:Hmgxb3 UTSW 18 61,290,746 (GRCm39) missense probably benign 0.08
R2342:Hmgxb3 UTSW 18 61,296,063 (GRCm39) missense possibly damaging 0.89
R2436:Hmgxb3 UTSW 18 61,280,566 (GRCm39) missense probably benign
R2898:Hmgxb3 UTSW 18 61,288,368 (GRCm39) missense probably benign 0.00
R2975:Hmgxb3 UTSW 18 61,296,038 (GRCm39) nonsense probably null
R3110:Hmgxb3 UTSW 18 61,280,454 (GRCm39) missense probably damaging 1.00
R3111:Hmgxb3 UTSW 18 61,280,454 (GRCm39) missense probably damaging 1.00
R3112:Hmgxb3 UTSW 18 61,280,454 (GRCm39) missense probably damaging 1.00
R4327:Hmgxb3 UTSW 18 61,300,611 (GRCm39) missense probably benign 0.11
R4710:Hmgxb3 UTSW 18 61,270,547 (GRCm39) missense probably damaging 1.00
R4750:Hmgxb3 UTSW 18 61,300,568 (GRCm39) missense probably benign
R4876:Hmgxb3 UTSW 18 61,279,606 (GRCm39) missense possibly damaging 0.94
R5490:Hmgxb3 UTSW 18 61,296,049 (GRCm39) missense probably damaging 0.99
R5601:Hmgxb3 UTSW 18 61,270,694 (GRCm39) missense probably damaging 1.00
R5718:Hmgxb3 UTSW 18 61,273,909 (GRCm39) missense probably benign 0.05
R6011:Hmgxb3 UTSW 18 61,296,096 (GRCm39) missense probably damaging 0.97
R6034:Hmgxb3 UTSW 18 61,265,594 (GRCm39) missense probably damaging 1.00
R6034:Hmgxb3 UTSW 18 61,265,594 (GRCm39) missense probably damaging 1.00
R6092:Hmgxb3 UTSW 18 61,270,672 (GRCm39) missense possibly damaging 0.56
R6142:Hmgxb3 UTSW 18 61,269,309 (GRCm39) missense probably benign 0.00
R6419:Hmgxb3 UTSW 18 61,285,296 (GRCm39) missense possibly damaging 0.71
R6675:Hmgxb3 UTSW 18 61,270,648 (GRCm39) missense possibly damaging 0.86
R7130:Hmgxb3 UTSW 18 61,265,450 (GRCm39) missense probably benign
R7431:Hmgxb3 UTSW 18 61,280,517 (GRCm39) missense probably damaging 1.00
R8265:Hmgxb3 UTSW 18 61,300,410 (GRCm39) missense possibly damaging 0.77
R8559:Hmgxb3 UTSW 18 61,288,491 (GRCm39) missense probably benign 0.19
R8674:Hmgxb3 UTSW 18 61,269,303 (GRCm39) missense probably benign 0.37
R8711:Hmgxb3 UTSW 18 61,290,721 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- TATCAATGGCCCCTCAGACC -3'
(R):5'- CCAAGTGGAGCTCTGAACTC -3'

Sequencing Primer
(F):5'- GCCCCTCAGACCGTCTC -3'
(R):5'- GGAGCTCTGAACTCTGTAAGCATC -3'
Posted On 2016-07-06