Mutagenetix > Incidental Mutation

Incidental Mutation 'R5197:Cyp39a1'

400407

Institutional Source

Beutler Lab

Gene Symbol

Cyp39a1

Ensembl Gene

ENSMUSG00000023963

Gene Name

cytochrome P450, family 39, subfamily a, polypeptide 1

Synonyms

oxysterol 7-alpha-hydroxylase

MMRRC Submission

042773-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.064) question?

Stock #

R5197 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

43978316-44062322 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 44057429 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Valine at position 423 (L423V)

Ref Sequence

ENSEMBL: ENSMUSP00000130073 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000170988]

AlphaFold

Q9JKJ9

Predicted Effect

possibly damaging
Transcript: ENSMUST00000170988
AA Change: L423V

PolyPhen 2 Score 0.668 (Sensitivity: 0.86; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000130073
Gene: ENSMUSG00000023963
AA Change: L423V

Domain	Start	End	E-Value	Type
Pfam:p450	32	464	1.9e-52	PFAM

Meta Mutation Damage Score

0.2493

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.3%
20x: 95.5%

Validation Efficiency

99% (67/68)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. This endoplasmic reticulum protein is involved in the conversion of cholesterol to bile acids. Its substrates include the oxysterols 25-hydroxycholesterol, 27-hydroxycholesterol and 24-hydroxycholesterol. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acsbg1	T	C	9: 54,529,866 (GRCm39)	E247G	possibly damaging	Het
Adgra3	A	G	5: 50,118,096 (GRCm39)	F1151L	probably benign	Het
Afg3l2	G	T	18: 67,554,329 (GRCm39)	L458M	probably damaging	Het
Aldh4a1	A	C	4: 139,375,612 (GRCm39)		probably benign	Het
Anln	A	T	9: 22,264,077 (GRCm39)		probably null	Het
Aste1	T	C	9: 105,282,253 (GRCm39)	S74P	probably damaging	Het
Atp6v0e2	G	A	6: 48,517,051 (GRCm39)	R77H	probably benign	Het
Brpf1	A	G	6: 113,296,902 (GRCm39)	D962G	possibly damaging	Het
Btbd2	T	C	10: 80,482,253 (GRCm39)	D249G	probably damaging	Het
Catsper3	T	C	13: 55,955,989 (GRCm39)		probably null	Het
Cfap43	A	G	19: 47,885,811 (GRCm39)	L268P	probably damaging	Het
Cftr	T	C	6: 18,255,413 (GRCm39)	V540A	probably benign	Het
Col22a1	C	T	15: 71,881,255 (GRCm39)	G32D	probably damaging	Het
Col5a2	G	T	1: 45,432,241 (GRCm39)	P804Q	probably benign	Het
Cyp2d41-ps	A	G	15: 82,662,981 (GRCm39)		noncoding transcript	Het
Elmo1	T	G	13: 20,748,607 (GRCm39)	V484G	probably benign	Het
Eps8	C	A	6: 137,467,288 (GRCm39)	Q656H	probably damaging	Het
Eps8	T	C	6: 137,467,289 (GRCm39)	Q656R	possibly damaging	Het
Fshb	T	C	2: 106,887,854 (GRCm39)	D55G	possibly damaging	Het
Garin1a	G	T	6: 29,281,221 (GRCm39)		probably benign	Het
H3c4	T	A	13: 23,760,304 (GRCm39)	L110Q	probably damaging	Het
Herc1	C	A	9: 66,355,786 (GRCm39)	Q2346K	probably damaging	Het
Htr3b	T	C	9: 48,856,815 (GRCm39)	D221G	probably benign	Het
Ift74	T	A	4: 94,550,833 (GRCm39)	D328E	probably benign	Het
Kif21b	A	T	1: 136,072,363 (GRCm39)	K23M	probably damaging	Het
Lgr6	C	T	1: 134,921,748 (GRCm39)	A199T	probably damaging	Het
Lipc	T	A	9: 70,705,673 (GRCm39)	E470V	probably benign	Het
Lrrc4	G	T	6: 28,830,142 (GRCm39)	T68K	probably damaging	Het
Lrrc63	T	A	14: 75,322,322 (GRCm39)	H594L	possibly damaging	Het
Mfsd14a	A	T	3: 116,442,150 (GRCm39)		probably benign	Het
Mob2	T	C	7: 141,563,274 (GRCm39)		probably null	Het
Nckap5	T	A	1: 126,150,410 (GRCm39)	H105L	possibly damaging	Het
Ngef	C	A	1: 87,437,090 (GRCm39)	G133*	probably null	Het
Or14j2	T	G	17: 37,886,111 (GRCm39)	I68L	probably benign	Het
Or1e16	AGCGGTCGTAGGC	AGC	11: 73,286,480 (GRCm39)		probably null	Het
Or2t1	T	A	14: 14,328,462 (GRCm38)	M117K	probably damaging	Het
Or52s1	G	A	7: 102,861,207 (GRCm39)	V47I	probably benign	Het
Or5b120	G	T	19: 13,479,748 (GRCm39)	V14F	possibly damaging	Het
Or5g23	T	C	2: 85,438,791 (GRCm39)	I154M	probably benign	Het
Pard3	A	G	8: 127,800,040 (GRCm39)		probably null	Het
Pgm2	C	T	5: 64,263,175 (GRCm39)	A274V	possibly damaging	Het
Ppp1r9a	T	A	6: 5,156,177 (GRCm39)	S1144R	probably damaging	Het
Pramel23	A	C	4: 143,424,632 (GRCm39)	C270W	possibly damaging	Het
Prkcq	C	T	2: 11,304,227 (GRCm39)	P590L	probably damaging	Het
Psmd13	T	A	7: 140,474,374 (GRCm39)		probably null	Het
Rab3gap1	T	A	1: 127,816,931 (GRCm39)	D63E	probably benign	Het
Rag2	C	A	2: 101,461,085 (GRCm39)	T465K	probably damaging	Het
Rnase6	A	G	14: 51,367,670 (GRCm39)	M21V	unknown	Het
Rufy4	T	C	1: 74,186,822 (GRCm39)	C537R	probably damaging	Het
Ryr2	A	T	13: 11,653,316 (GRCm39)		probably null	Het
Sash1	T	G	10: 8,615,989 (GRCm39)	R624S	probably damaging	Het
Slc1a2	A	G	2: 102,586,460 (GRCm39)	I355V	probably benign	Het
Srrm2	T	C	17: 24,036,358 (GRCm39)	S1097P	probably benign	Het
Sugct	C	T	13: 17,497,861 (GRCm39)	A271T	probably damaging	Het
Tdrd7	T	C	4: 46,034,350 (GRCm39)	V1065A	probably damaging	Het
Tmprss6	T	A	15: 78,338,389 (GRCm39)	Y307F	probably damaging	Het
Tram1	T	C	1: 13,642,126 (GRCm39)	N216S	probably benign	Het
Ttk	T	C	9: 83,721,394 (GRCm39)	V93A	probably benign	Het
Ubr4	A	G	4: 139,195,408 (GRCm39)	Y1210C	probably damaging	Het
Wdr7	A	G	18: 63,871,937 (GRCm39)	K364E	probably benign	Het
Xrcc2	G	T	5: 25,897,656 (GRCm39)	H98N	probably benign	Het
Zdhhc11	A	G	13: 74,113,688 (GRCm39)	I77V	probably benign	Het
Zfp54	C	T	17: 21,654,442 (GRCm39)	S312L	probably benign	Het
Zfp647	G	A	15: 76,796,285 (GRCm39)	P125L	probably damaging	Het

Other mutations in Cyp39a1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00972:Cyp39a1	APN	17	44,012,434 (GRCm39)	missense	probably benign	0.01
IGL01070:Cyp39a1	APN	17	43,993,913 (GRCm39)	missense	probably benign	0.00
IGL01606:Cyp39a1	APN	17	44,057,509 (GRCm39)	splice site	probably benign
IGL01769:Cyp39a1	APN	17	44,060,806 (GRCm39)	missense	possibly damaging	0.53
IGL01916:Cyp39a1	APN	17	44,041,941 (GRCm39)	missense	probably damaging	1.00
IGL02374:Cyp39a1	APN	17	44,060,872 (GRCm39)	utr 3 prime	probably benign
IGL02402:Cyp39a1	APN	17	44,002,613 (GRCm39)	missense	probably benign	0.07
IGL03097:Cyp39a1	UTSW	17	43,993,941 (GRCm39)	nonsense	probably null
R0230:Cyp39a1	UTSW	17	44,042,903 (GRCm39)	missense	probably damaging	1.00
R1244:Cyp39a1	UTSW	17	44,060,836 (GRCm39)	missense	probably benign	0.13
R1572:Cyp39a1	UTSW	17	43,991,020 (GRCm39)	missense	probably damaging	1.00
R1656:Cyp39a1	UTSW	17	43,978,510 (GRCm39)	missense	possibly damaging	0.74
R4036:Cyp39a1	UTSW	17	43,987,831 (GRCm39)	missense	probably damaging	0.97
R4308:Cyp39a1	UTSW	17	44,041,855 (GRCm39)	splice site	probably null
R5081:Cyp39a1	UTSW	17	44,057,488 (GRCm39)	missense	probably damaging	1.00
R5405:Cyp39a1	UTSW	17	43,987,831 (GRCm39)	missense	probably damaging	1.00
R5566:Cyp39a1	UTSW	17	43,996,099 (GRCm39)	missense	possibly damaging	0.92
R5578:Cyp39a1	UTSW	17	43,991,031 (GRCm39)	missense	possibly damaging	0.91
R6045:Cyp39a1	UTSW	17	44,042,882 (GRCm39)	missense	probably damaging	1.00
R6495:Cyp39a1	UTSW	17	44,002,585 (GRCm39)	missense	probably benign	0.41
R7191:Cyp39a1	UTSW	17	44,041,910 (GRCm39)	nonsense	probably null
R7431:Cyp39a1	UTSW	17	43,993,906 (GRCm39)	missense	probably benign
R7522:Cyp39a1	UTSW	17	43,978,370 (GRCm39)	start gained	probably benign
R7620:Cyp39a1	UTSW	17	44,036,544 (GRCm39)	splice site	probably null
R8022:Cyp39a1	UTSW	17	44,057,468 (GRCm39)	missense	probably damaging	1.00
R8143:Cyp39a1	UTSW	17	44,036,517 (GRCm39)	missense	probably benign	0.39
R8483:Cyp39a1	UTSW	17	43,993,898 (GRCm39)	missense	probably benign	0.01
R8549:Cyp39a1	UTSW	17	44,041,886 (GRCm39)	missense	possibly damaging	0.95
R8964:Cyp39a1	UTSW	17	44,002,558 (GRCm39)	missense	probably benign	0.02
R9730:Cyp39a1	UTSW	17	43,991,029 (GRCm39)	missense	probably benign	0.01
Z1176:Cyp39a1	UTSW	17	44,041,939 (GRCm39)	missense	probably damaging	1.00
Z1176:Cyp39a1	UTSW	17	44,036,468 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- ACATATGTGCATGCATGTATCTGTG -3'
(R):5'- GGTCATCACTCAACACATGGC -3'

Sequencing Primer
(F):5'- GTTCTAGCCTCTCAGAGCACATAC -3'
(R):5'- CACATGGCTAGTATTAAAAGCCAG -3'

Posted On

2016-07-06