Mutagenetix > Incidental Mutation

Incidental Mutation 'R5199:Cnot8'

400616

Institutional Source

Beutler Lab

Gene Symbol

Cnot8

Ensembl Gene

ENSMUSG00000020515

Gene Name

CCR4-NOT transcription complex, subunit 8

Synonyms

1500015I04Rik, 1810022F04Rik

MMRRC Submission

042775-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.907) question?

Stock #

R5199 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

57994979-58009420 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to T at 58006100 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Stop codon at position 210 (Q210*)

Ref Sequence

ENSEMBL: ENSMUSP00000104471 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020822] [ENSMUST00000108843] [ENSMUST00000134896] [ENSMUST00000172035]

AlphaFold

Q9D8X5

Predicted Effect

probably null
Transcript: ENSMUST00000020822
AA Change: Q210*

SMART Domains

Protein: ENSMUSP00000020822
Gene: ENSMUSG00000020515
AA Change: Q210*

Domain	Start	End	E-Value	Type
Pfam:CAF1	15	139	4.3e-15	PFAM
Pfam:CAF1	138	238	1.4e-15	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000108843
AA Change: Q210*

SMART Domains

Protein: ENSMUSP00000104471
Gene: ENSMUSG00000020515
AA Change: Q210*

Domain	Start	End	E-Value	Type
Pfam:CAF1	13	240	1.3e-73	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133923

Predicted Effect

probably benign
Transcript: ENSMUST00000134896

SMART Domains

Protein: ENSMUSP00000116116
Gene: ENSMUSG00000020515

Domain	Start	End	E-Value	Type
Pfam:CAF1	13	75	3.8e-21	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000172035

SMART Domains

Protein: ENSMUSP00000131842
Gene: ENSMUSG00000037275

Domain	Start	End	E-Value	Type
WD40	53	95	1.47e-6	SMART
WD40	98	138	6.19e-1	SMART
WD40	141	180	1.54e0	SMART
WD40	184	255	2.45e-8	SMART
WD40	280	312	1.42e2	SMART
WD40	316	365	1.99e0	SMART
WD40	368	408	5.15e-2	SMART
WD40	415	455	8.49e-3	SMART
WD40	460	511	8.84e1	SMART
WD40	529	564	4.28e0	SMART
WD40	567	613	2.24e-2	SMART
WD40	628	668	2.2e-10	SMART
WD40	671	711	2.31e-4	SMART
low complexity region	731	754	N/A	INTRINSIC
low complexity region	788	804	N/A	INTRINSIC
low complexity region	813	844	N/A	INTRINSIC
low complexity region	1064	1084	N/A	INTRINSIC
low complexity region	1117	1132	N/A	INTRINSIC

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.4%
20x: 95.7%

Validation Efficiency

100% (57/57)

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadacl2fm1	T	C	3: 59,843,906 (GRCm39)	L200P	probably damaging	Het
Adam1a	T	C	5: 121,659,215 (GRCm39)	E26G	probably benign	Het
Adar	T	A	3: 89,653,251 (GRCm39)	M797K	probably damaging	Het
Amdhd1	A	T	10: 93,361,847 (GRCm39)	C352S	probably damaging	Het
AW554918	C	A	18: 25,473,356 (GRCm39)	R387S	probably damaging	Het
Cabp1	A	G	5: 115,324,102 (GRCm39)	V5A	possibly damaging	Het
Carmil1	A	G	13: 24,295,853 (GRCm39)	L387P	probably damaging	Het
Cds2	T	A	2: 132,140,403 (GRCm39)	H200Q	probably damaging	Het
Cep170b	T	A	12: 112,710,581 (GRCm39)	L1470Q	probably damaging	Het
Cnnm1	A	G	19: 43,483,425 (GRCm39)	D956G	possibly damaging	Het
Cpne8	G	A	15: 90,532,812 (GRCm39)	T65I	probably benign	Het
Crygn	A	G	5: 24,961,156 (GRCm39)	V50A	probably damaging	Het
Cxcr4	A	G	1: 128,517,283 (GRCm39)	V126A	probably damaging	Het
Cyp4f15	A	G	17: 32,921,346 (GRCm39)	D464G	probably benign	Het
Dapp1	C	T	3: 137,687,146 (GRCm39)	S12N	probably benign	Het
Dhps	G	A	8: 85,800,035 (GRCm39)	G162R	probably damaging	Het
Dsp	T	G	13: 38,376,878 (GRCm39)	Y1554*	probably null	Het
Etl4	G	T	2: 20,748,853 (GRCm39)	R397L	probably damaging	Het
Ezh2	C	T	6: 47,528,659 (GRCm39)	C291Y	probably benign	Het
Gbp9	T	C	5: 105,231,678 (GRCm39)	S303G	probably benign	Het
Gm11444	A	C	11: 85,738,845 (GRCm39)	S83A	unknown	Het
Gpat4	A	G	8: 23,672,712 (GRCm39)	V46A	possibly damaging	Het
Haus6	T	C	4: 86,501,222 (GRCm39)	D883G	possibly damaging	Het
Hinfp	T	C	9: 44,207,689 (GRCm39)	E439G	probably benign	Het
Ifna14	T	A	4: 88,489,599 (GRCm39)	Y146F	probably damaging	Het
Igkv3-3	A	T	6: 70,664,488 (GRCm39)	Y110F	probably damaging	Het
Kansl2-ps	A	G	7: 72,322,942 (GRCm39)		noncoding transcript	Het
Klrh1	T	A	6: 129,752,781 (GRCm39)	Y8F	possibly damaging	Het
Mcmdc2	T	C	1: 9,990,660 (GRCm39)	V279A	probably benign	Het
Mug2	T	A	6: 122,017,619 (GRCm39)	V452D	probably benign	Het
Ndufb3	C	G	1: 58,630,281 (GRCm39)		probably benign	Het
Oas1d	G	T	5: 121,057,208 (GRCm39)	K271N	probably benign	Het
Or4c110	T	A	2: 88,832,107 (GRCm39)	H175L	possibly damaging	Het
Or5ac21	T	A	16: 59,124,103 (GRCm39)	F196I	probably benign	Het
Or9g3	A	G	2: 85,590,558 (GRCm39)	L54P	probably damaging	Het
Otx1	C	A	11: 21,947,037 (GRCm39)	A91S	probably damaging	Het
Pcnt	T	A	10: 76,254,378 (GRCm39)	H817L	probably benign	Het
Per3	G	T	4: 151,097,352 (GRCm39)	S724R	probably benign	Het
Phlpp1	T	A	1: 106,101,124 (GRCm39)	V464E	probably damaging	Het
Psme4	A	G	11: 30,803,272 (GRCm39)	E38G	probably benign	Het
Qtrt2	T	C	16: 43,687,788 (GRCm39)	N264S	probably benign	Het
Ranbp2	G	A	10: 58,300,265 (GRCm39)	R557H	probably benign	Het
Rptor	T	A	11: 119,494,642 (GRCm39)	S3T	probably benign	Het
Saxo1	T	A	4: 86,406,019 (GRCm39)	Y60F	probably damaging	Het
St3gal1	A	G	15: 66,985,564 (GRCm39)	V30A	probably benign	Het
Tmem245	G	A	4: 56,925,149 (GRCm39)	S324L	probably benign	Het
Topbp1	A	G	9: 103,223,871 (GRCm39)		probably benign	Het
Urb1	T	C	16: 90,589,636 (GRCm39)	T382A	possibly damaging	Het
Vmn1r178	A	T	7: 23,593,814 (GRCm39)	L214F	probably benign	Het
Vmn2r82	G	A	10: 79,231,921 (GRCm39)	C640Y	probably damaging	Het
Vsx2	A	G	12: 84,639,984 (GRCm39)	D281G	probably benign	Het
Zfp804b	A	T	5: 6,820,013 (GRCm39)	C1017S	probably benign	Het

Other mutations in Cnot8

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01639:Cnot8	APN	11	58,002,188 (GRCm39)	missense	probably damaging	1.00
IGL01774:Cnot8	APN	11	58,006,133 (GRCm39)	missense	probably benign	0.01
IGL02877:Cnot8	APN	11	58,002,228 (GRCm39)	missense	probably benign	0.01
straws	UTSW	11	58,004,891 (GRCm39)	missense	probably damaging	1.00
R0465:Cnot8	UTSW	11	58,004,886 (GRCm39)	missense	probably damaging	0.99
R1802:Cnot8	UTSW	11	58,008,361 (GRCm39)	missense	probably benign	0.01
R2418:Cnot8	UTSW	11	58,006,136 (GRCm39)	missense	probably damaging	1.00
R2419:Cnot8	UTSW	11	58,006,136 (GRCm39)	missense	probably damaging	1.00
R5257:Cnot8	UTSW	11	58,008,348 (GRCm39)	missense	possibly damaging	0.94
R5317:Cnot8	UTSW	11	58,004,029 (GRCm39)	missense	probably damaging	1.00
R5351:Cnot8	UTSW	11	58,006,147 (GRCm39)	missense	probably damaging	1.00
R5702:Cnot8	UTSW	11	58,004,873 (GRCm39)	missense	possibly damaging	0.71
R6106:Cnot8	UTSW	11	58,004,816 (GRCm39)	missense	probably damaging	0.96
R6261:Cnot8	UTSW	11	58,004,877 (GRCm39)	missense	probably damaging	1.00
R6419:Cnot8	UTSW	11	58,004,891 (GRCm39)	missense	probably damaging	1.00
R6947:Cnot8	UTSW	11	58,008,331 (GRCm39)	missense	probably benign	0.03
R7070:Cnot8	UTSW	11	58,008,278 (GRCm39)	missense	probably benign	0.00
R7888:Cnot8	UTSW	11	58,002,137 (GRCm39)	missense	probably benign
Z1176:Cnot8	UTSW	11	58,003,916 (GRCm39)	missense	probably benign	0.05

Predicted Primers

PCR Primer
(F):5'- CAGGGTACTGTTTGGGAAGAAT -3'
(R):5'- CAGCCTCTGTAGATAGACTAACAA -3'

Sequencing Primer
(F):5'- GTACTGTTTGGGAAGAATAAGAGTG -3'
(R):5'- CATTCCTACTGTAGAAAGCAGAAG -3'

Posted On

2016-07-06