Mutagenetix > Incidental Mutation

Incidental Mutation 'R5244:Yif1b'

401051

Institutional Source

Beutler Lab

Gene Symbol

Yif1b

Ensembl Gene

ENSMUSG00000030588

Gene Name

Yip1 interacting factor homolog B (S. cerevisiae)

Synonyms

9430029K10Rik

MMRRC Submission

042815-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.155) question?

Stock #

R5244 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

28937754-28947022 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 28943866 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Threonine at position 115 (A115T)

Ref Sequence

ENSEMBL: ENSMUSP00000146477 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032808] [ENSMUST00000032809] [ENSMUST00000108237] [ENSMUST00000108238] [ENSMUST00000138128] [ENSMUST00000142519]

AlphaFold

Q9CX30

Predicted Effect

probably benign
Transcript: ENSMUST00000032808

SMART Domains

Protein: ENSMUSP00000032808
Gene: ENSMUSG00000030587

Domain	Start	End	E-Value	Type
Pfam:IMUP	1	114	1.8e-39	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000032809
AA Change: A111T

PolyPhen 2 Score 0.899 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000032809
Gene: ENSMUSG00000030588
AA Change: A111T

Domain	Start	End	E-Value	Type
low complexity region	45	65	N/A	INTRINSIC
Pfam:YIF1	72	304	5.7e-86	PFAM
Pfam:Yip1	110	282	7.9e-11	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000108237
AA Change: A103T

PolyPhen 2 Score 0.975 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000103872
Gene: ENSMUSG00000030588
AA Change: A103T

Domain	Start	End	E-Value	Type
low complexity region	37	57	N/A	INTRINSIC
Pfam:YIF1	64	176	3.9e-48	PFAM
Pfam:YIF1	169	244	2.5e-14	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000108238
AA Change: A108T

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000103873
Gene: ENSMUSG00000030588
AA Change: A108T

Domain	Start	End	E-Value	Type
low complexity region	42	62	N/A	INTRINSIC
Pfam:YIF1	66	303	5.4e-107	PFAM
Pfam:Yip1	107	279	7.7e-11	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000138128
AA Change: A123T

PolyPhen 2 Score 0.777 (Sensitivity: 0.85; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000117224
Gene: ENSMUSG00000030588
AA Change: A123T

Domain	Start	End	E-Value	Type
low complexity region	42	62	N/A	INTRINSIC
low complexity region	100	110	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000142519
AA Change: A115T

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151339

Meta Mutation Damage Score

0.8898

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.3%
20x: 95.4%

Validation Efficiency

97% (63/65)

Allele List at MGI

All alleles(19) : Targeted(3) Gene trapped(16)

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930550C14Rik	G	T	9: 53,323,098 (GRCm39)	G45W	probably damaging	Het
Abca13	C	T	11: 9,225,081 (GRCm39)	T520I	probably benign	Het
Adamtsl3	C	T	7: 82,247,277 (GRCm39)	P485L	probably benign	Het
Bbof1	A	C	12: 84,476,847 (GRCm39)	E492A	possibly damaging	Het
Capn11	T	C	17: 45,944,818 (GRCm39)	E483G	probably damaging	Het
Cbs	C	T	17: 31,836,134 (GRCm39)	G438D	probably damaging	Het
Chil6	A	G	3: 106,297,290 (GRCm39)	Y284H	probably damaging	Het
Cops4	C	A	5: 100,681,241 (GRCm39)	Q131K	probably benign	Het
Cul4a	T	C	8: 13,196,566 (GRCm39)	I740T	probably damaging	Het
Cyfip1	C	T	7: 55,574,947 (GRCm39)	T1066I	probably damaging	Het
Dnah7b	T	C	1: 46,273,018 (GRCm39)	L2382P	probably damaging	Het
Ehd3	A	T	17: 74,136,995 (GRCm39)	H388L	probably benign	Het
Fam13a	G	T	6: 58,930,459 (GRCm39)	Y484*	probably null	Het
Gm5117	A	G	8: 32,228,305 (GRCm39)		noncoding transcript	Het
Gulp1	G	A	1: 44,827,613 (GRCm39)	D260N	probably damaging	Het
Hhipl1	T	A	12: 108,278,393 (GRCm39)	N240K	probably damaging	Het
Hydin	A	T	8: 111,259,451 (GRCm39)	E2474D	possibly damaging	Het
Ifi207	C	T	1: 173,557,503 (GRCm39)	V412I	probably benign	Het
Ighv9-4	T	C	12: 114,263,871 (GRCm39)	I21V	probably benign	Het
Kcnh1	A	T	1: 191,907,184 (GRCm39)	T79S	probably benign	Het
Kpna6	A	G	4: 129,549,221 (GRCm39)		probably null	Het
Lnpk	C	T	2: 74,362,232 (GRCm39)	G262D	probably damaging	Het
Lsm7	T	C	10: 80,688,907 (GRCm39)	E66G	probably benign	Het
Mbd3l1	T	A	9: 18,395,933 (GRCm39)	C19*	probably null	Het
Mfsd6l	T	A	11: 68,448,001 (GRCm39)	L284Q	possibly damaging	Het
Naip5	C	T	13: 100,382,170 (GRCm39)	V180I	probably benign	Het
Or2ag1b	T	A	7: 106,288,396 (GRCm39)	I181F	probably benign	Het
Or2j6	A	T	7: 139,980,051 (GRCm39)	C303S	probably benign	Het
Or4k39	T	A	2: 111,238,899 (GRCm39)		noncoding transcript	Het
Or6d13	T	A	6: 116,518,187 (GRCm39)	Y258N	probably damaging	Het
Or7g22	A	T	9: 19,049,147 (GRCm39)	N286I	probably damaging	Het
Or8g20	T	G	9: 39,395,808 (GRCm39)	H247P	probably damaging	Het
Or8u10	C	G	2: 85,915,300 (GRCm39)	A274P	probably damaging	Het
Pck1	T	A	2: 172,996,656 (GRCm39)	I190N	possibly damaging	Het
Pfkfb3	T	A	2: 11,489,660 (GRCm39)	I209F	probably damaging	Het
Phc1	A	G	6: 122,298,938 (GRCm39)	S677P	probably damaging	Het
Pirb	G	A	7: 3,719,062 (GRCm39)	A609V	probably benign	Het
Plag1	A	T	4: 3,903,887 (GRCm39)	S435T	probably benign	Het
Plscr2	C	G	9: 92,173,102 (GRCm39)	L215V	probably benign	Het
Pnma8a	A	G	7: 16,695,248 (GRCm39)	S368G	probably damaging	Het
Polr2b	A	G	5: 77,490,847 (GRCm39)		probably benign	Het
Pthlh	T	C	6: 147,158,651 (GRCm39)	Y103C	probably damaging	Het
Ptprq	A	G	10: 107,422,556 (GRCm39)	V1612A	possibly damaging	Het
Rprd2	T	A	3: 95,697,494 (GRCm39)	I85L	possibly damaging	Het
Slc27a2	T	C	2: 126,420,775 (GRCm39)	V422A	probably benign	Het
Slc29a1	T	C	17: 45,899,339 (GRCm39)		probably benign	Het
Slc36a4	A	T	9: 15,645,574 (GRCm39)	I334F	probably benign	Het
Slc4a10	T	A	2: 62,119,069 (GRCm39)	S761R	probably damaging	Het
Spa17	T	A	9: 37,523,285 (GRCm39)	M1L	probably damaging	Het
Srsf11	C	T	3: 157,728,981 (GRCm39)		probably benign	Het
Stk19	A	G	17: 35,051,046 (GRCm39)	L72P	probably damaging	Het
Trhde	T	C	10: 114,636,986 (GRCm39)	M74V	probably benign	Het
Trim37	C	T	11: 87,109,083 (GRCm39)	H937Y	probably benign	Het
Ttc7b	A	G	12: 100,314,269 (GRCm39)	L46P	probably damaging	Het
Ttll4	T	C	1: 74,735,607 (GRCm39)	V1005A	probably benign	Het
Ugt2b36	T	C	5: 87,239,765 (GRCm39)	T207A	probably damaging	Het
Unc13c	C	T	9: 73,433,233 (GRCm39)		probably null	Het
Vmn1r221	T	C	13: 23,401,808 (GRCm39)		noncoding transcript	Het
Vmn2r101	T	C	17: 19,831,788 (GRCm39)	S595P	probably damaging	Het
Wnt10a	T	C	1: 74,842,454 (GRCm39)	L310P	probably damaging	Het
Zfp219	C	A	14: 52,245,999 (GRCm39)	R331L	possibly damaging	Het

Other mutations in Yif1b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL03172:Yif1b	APN	7	28,937,873 (GRCm39)	splice site	probably null
P0027:Yif1b	UTSW	7	28,938,038 (GRCm39)	critical splice donor site	probably null
R3605:Yif1b	UTSW	7	28,937,835 (GRCm39)	missense	possibly damaging	0.85
R3607:Yif1b	UTSW	7	28,937,835 (GRCm39)	missense	possibly damaging	0.85
R5432:Yif1b	UTSW	7	28,945,393 (GRCm39)	missense	probably damaging	0.99
R6221:Yif1b	UTSW	7	28,945,207 (GRCm39)	missense	possibly damaging	0.71
R7779:Yif1b	UTSW	7	28,945,328 (GRCm39)	missense	probably damaging	1.00
R7856:Yif1b	UTSW	7	28,944,045 (GRCm39)	missense	possibly damaging	0.59
R8090:Yif1b	UTSW	7	28,943,726 (GRCm39)	missense	probably benign	0.44
R8749:Yif1b	UTSW	7	28,946,690 (GRCm39)	missense	probably benign	0.07
T0722:Yif1b	UTSW	7	28,938,038 (GRCm39)	critical splice donor site	probably null
U24488:Yif1b	UTSW	7	28,943,594 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- AACATGGCGATGGTCTACGG -3'
(R):5'- GAGCATTGATGTCGAAGCGG -3'

Sequencing Primer
(F):5'- TGGTCTACGGGAGCAGC -3'
(R):5'- CACTGGGGTGTCCTGTTGGTAC -3'

Posted On

2016-07-06