Incidental Mutation 'R5258:Nle1'
ID |
401257 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Nle1
|
Ensembl Gene |
ENSMUSG00000020692 |
Gene Name |
notchless homolog 1 |
Synonyms |
l11Jus4, Nle, l11Jus1, notchless |
MMRRC Submission |
042828-MU
|
Accession Numbers |
|
Essential gene? |
Essential
(E-score: 1.000)
|
Stock # |
R5258 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
11 |
Chromosomal Location |
82791594-82799237 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 82795772 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Aspartic acid to Glycine
at position 225
(D225G)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000099502
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000018988]
[ENSMUST00000103213]
|
AlphaFold |
Q8VEJ4 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000018988
|
SMART Domains |
Protein: ENSMUSP00000018988 Gene: ENSMUSG00000018844
Domain | Start | End | E-Value | Type |
low complexity region
|
159 |
170 |
N/A |
INTRINSIC |
FN3
|
176 |
264 |
9.48e-3 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000103213
AA Change: D225G
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000099502 Gene: ENSMUSG00000020692 AA Change: D225G
Domain | Start | End | E-Value | Type |
low complexity region
|
2 |
11 |
N/A |
INTRINSIC |
Pfam:NLE
|
17 |
77 |
3.6e-15 |
PFAM |
WD40
|
103 |
142 |
5.22e-12 |
SMART |
WD40
|
145 |
184 |
1.48e-11 |
SMART |
WD40
|
188 |
232 |
1.66e-5 |
SMART |
WD40
|
235 |
273 |
3.11e-10 |
SMART |
WD40
|
276 |
357 |
1.14e-3 |
SMART |
WD40
|
361 |
400 |
8.81e-10 |
SMART |
WD40
|
403 |
442 |
1.69e-11 |
SMART |
WD40
|
445 |
484 |
9.44e-10 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000124109
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000126202
|
SMART Domains |
Protein: ENSMUSP00000130605 Gene: ENSMUSG00000020692
Domain | Start | End | E-Value | Type |
SCOP:d1flga_
|
12 |
46 |
2e-5 |
SMART |
Blast:WD40
|
22 |
48 |
2e-10 |
BLAST |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000140318
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000147915
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000167196
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000170815
|
Meta Mutation Damage Score |
0.9640 |
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 96.9%
- 20x: 94.4%
|
Validation Efficiency |
98% (55/56) |
MGI Phenotype |
PHENOTYPE: Homozygous null mice display embryonic lethality before somite formation, most blastocysts fail to hatch out of the zona pellucida, and apoptosis is increased in the inner cell mass. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 52 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
3425401B19Rik |
T |
A |
14: 32,385,266 (GRCm39) |
D233V |
probably damaging |
Het |
Abca13 |
A |
T |
11: 9,199,684 (GRCm39) |
T128S |
possibly damaging |
Het |
Abca16 |
T |
G |
7: 120,035,992 (GRCm39) |
|
probably null |
Het |
Abcc8 |
T |
C |
7: 45,757,811 (GRCm39) |
I1313V |
probably benign |
Het |
Abcc8 |
C |
T |
7: 45,806,572 (GRCm39) |
V379I |
probably benign |
Het |
Acp3 |
T |
C |
9: 104,186,674 (GRCm39) |
I266V |
probably benign |
Het |
Asf1b |
C |
T |
8: 84,695,896 (GRCm39) |
T179I |
probably benign |
Het |
B3gnt7 |
A |
G |
1: 86,233,287 (GRCm39) |
K61E |
possibly damaging |
Het |
Card11 |
G |
A |
5: 140,862,180 (GRCm39) |
P1039L |
possibly damaging |
Het |
Cd1d2 |
C |
G |
3: 86,894,954 (GRCm39) |
R147G |
possibly damaging |
Het |
Cfap68 |
T |
C |
9: 50,675,633 (GRCm39) |
|
probably benign |
Het |
Cfap69 |
T |
C |
5: 5,654,271 (GRCm39) |
|
probably null |
Het |
Ddx46 |
T |
C |
13: 55,800,837 (GRCm39) |
F331L |
possibly damaging |
Het |
Dkk4 |
C |
A |
8: 23,117,031 (GRCm39) |
L215I |
probably damaging |
Het |
Dnhd1 |
C |
T |
7: 105,323,244 (GRCm39) |
T584I |
probably benign |
Het |
Dock3 |
T |
C |
9: 106,874,124 (GRCm39) |
Y449C |
probably damaging |
Het |
Foxi2 |
C |
T |
7: 135,012,256 (GRCm39) |
T48M |
probably benign |
Het |
Gm12887 |
T |
C |
4: 121,472,897 (GRCm39) |
K82E |
probably benign |
Het |
Gm4787 |
G |
C |
12: 81,424,604 (GRCm39) |
T518S |
probably benign |
Het |
Igkv4-80 |
T |
A |
6: 68,993,811 (GRCm39) |
T27S |
probably benign |
Het |
Invs |
A |
G |
4: 48,396,374 (GRCm39) |
D349G |
possibly damaging |
Het |
Lbhd1 |
A |
G |
19: 8,861,453 (GRCm39) |
|
probably benign |
Het |
Lipo3 |
T |
A |
19: 33,591,243 (GRCm39) |
|
probably benign |
Het |
Llgl1 |
G |
C |
11: 60,602,389 (GRCm39) |
|
probably null |
Het |
Lyzl6 |
T |
A |
11: 103,525,899 (GRCm39) |
I74F |
probably damaging |
Het |
Map3k6 |
T |
C |
4: 132,974,953 (GRCm39) |
V662A |
possibly damaging |
Het |
Megf8 |
T |
A |
7: 25,047,751 (GRCm39) |
F1645I |
possibly damaging |
Het |
Mfsd4b2 |
T |
A |
10: 39,798,017 (GRCm39) |
M113L |
probably benign |
Het |
Mib1 |
G |
A |
18: 10,795,856 (GRCm39) |
|
probably null |
Het |
Mrps6 |
T |
A |
16: 91,896,543 (GRCm39) |
V36E |
probably damaging |
Het |
Nhsl1 |
C |
A |
10: 18,400,070 (GRCm39) |
S432* |
probably null |
Het |
Nlrp4c |
T |
A |
7: 6,069,622 (GRCm39) |
S508T |
probably benign |
Het |
Or1e16 |
AGCGGTCGTAGGC |
AGC |
11: 73,286,480 (GRCm39) |
|
probably null |
Het |
Or5d37 |
A |
T |
2: 87,923,762 (GRCm39) |
Y173N |
probably benign |
Het |
P2rx7 |
A |
G |
5: 122,819,066 (GRCm39) |
E496G |
probably damaging |
Het |
Prdm16 |
A |
T |
4: 154,451,671 (GRCm39) |
D179E |
possibly damaging |
Het |
Psca |
A |
T |
15: 74,588,240 (GRCm39) |
I56F |
probably damaging |
Het |
Ptprg |
A |
G |
14: 12,142,431 (GRCm38) |
T361A |
probably benign |
Het |
Ptrhd1 |
A |
G |
12: 4,286,481 (GRCm39) |
Y124C |
probably damaging |
Het |
Sesn1 |
C |
T |
10: 41,770,984 (GRCm39) |
P172S |
probably benign |
Het |
Sspo |
T |
C |
6: 48,453,428 (GRCm39) |
V2872A |
probably damaging |
Het |
Stard9 |
T |
A |
2: 120,529,824 (GRCm39) |
L2027H |
probably damaging |
Het |
Tas2r114 |
T |
A |
6: 131,666,504 (GRCm39) |
I175F |
probably benign |
Het |
Tex2 |
T |
A |
11: 106,458,585 (GRCm39) |
|
probably benign |
Het |
Tfdp1 |
C |
T |
8: 13,419,529 (GRCm39) |
T86M |
possibly damaging |
Het |
Trav14-1 |
C |
T |
14: 53,791,730 (GRCm39) |
H27Y |
probably benign |
Het |
Trim24 |
A |
T |
6: 37,896,335 (GRCm39) |
Q264L |
probably benign |
Het |
Vmn2r90 |
A |
G |
17: 17,933,114 (GRCm39) |
I225V |
probably benign |
Het |
Vps13b |
A |
G |
15: 35,794,567 (GRCm39) |
T2326A |
possibly damaging |
Het |
Zfp354b |
A |
C |
11: 50,813,917 (GRCm39) |
I336S |
probably benign |
Het |
Zfp407 |
C |
T |
18: 84,334,051 (GRCm39) |
V1761I |
probably damaging |
Het |
Zfp958 |
A |
T |
8: 4,678,456 (GRCm39) |
E160D |
probably benign |
Het |
|
Other mutations in Nle1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL02226:Nle1
|
APN |
11 |
82,795,133 (GRCm39) |
nonsense |
probably null |
|
IGL02945:Nle1
|
APN |
11 |
82,794,910 (GRCm39) |
splice site |
probably benign |
|
IGL03170:Nle1
|
APN |
11 |
82,795,096 (GRCm39) |
missense |
probably benign |
|
R0401:Nle1
|
UTSW |
11 |
82,796,205 (GRCm39) |
unclassified |
probably benign |
|
R0646:Nle1
|
UTSW |
11 |
82,795,671 (GRCm39) |
missense |
probably damaging |
1.00 |
R1958:Nle1
|
UTSW |
11 |
82,795,068 (GRCm39) |
missense |
probably benign |
0.01 |
R1966:Nle1
|
UTSW |
11 |
82,792,614 (GRCm39) |
missense |
probably damaging |
1.00 |
R2016:Nle1
|
UTSW |
11 |
82,796,373 (GRCm39) |
missense |
probably damaging |
1.00 |
R2017:Nle1
|
UTSW |
11 |
82,796,373 (GRCm39) |
missense |
probably damaging |
1.00 |
R2049:Nle1
|
UTSW |
11 |
82,796,192 (GRCm39) |
missense |
probably damaging |
1.00 |
R2140:Nle1
|
UTSW |
11 |
82,796,394 (GRCm39) |
missense |
probably damaging |
0.99 |
R2289:Nle1
|
UTSW |
11 |
82,793,879 (GRCm39) |
missense |
probably benign |
0.01 |
R4354:Nle1
|
UTSW |
11 |
82,797,257 (GRCm39) |
missense |
possibly damaging |
0.65 |
R4963:Nle1
|
UTSW |
11 |
82,795,763 (GRCm39) |
missense |
probably benign |
0.04 |
R4964:Nle1
|
UTSW |
11 |
82,799,018 (GRCm39) |
missense |
probably damaging |
1.00 |
R5257:Nle1
|
UTSW |
11 |
82,795,772 (GRCm39) |
missense |
probably damaging |
1.00 |
R5509:Nle1
|
UTSW |
11 |
82,794,008 (GRCm39) |
missense |
possibly damaging |
0.92 |
R6160:Nle1
|
UTSW |
11 |
82,798,983 (GRCm39) |
missense |
probably benign |
0.01 |
R7206:Nle1
|
UTSW |
11 |
82,795,757 (GRCm39) |
missense |
probably benign |
0.35 |
R7696:Nle1
|
UTSW |
11 |
82,795,792 (GRCm39) |
nonsense |
probably null |
|
R8765:Nle1
|
UTSW |
11 |
82,793,882 (GRCm39) |
missense |
probably damaging |
1.00 |
R9020:Nle1
|
UTSW |
11 |
82,797,275 (GRCm39) |
missense |
probably benign |
0.01 |
R9800:Nle1
|
UTSW |
11 |
82,793,876 (GRCm39) |
missense |
probably benign |
|
Z1176:Nle1
|
UTSW |
11 |
82,795,138 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1177:Nle1
|
UTSW |
11 |
82,792,669 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
Predicted Primers |
PCR Primer
(F):5'- TTCAGAATGCCCCTTACGTC -3'
(R):5'- TACTATGGCCACACCCCTTG -3'
Sequencing Primer
(F):5'- AGAATGCCCCTTACGTCATGGG -3'
(R):5'- GGCTCATCACATGACCTGAG -3'
|
Posted On |
2016-07-06 |