Incidental Mutation 'R5259:Vmn1r20'
ID 401296
Institutional Source Beutler Lab
Gene Symbol Vmn1r20
Ensembl Gene ENSMUSG00000115253
Gene Name vomeronasal 1 receptor 20
Synonyms Gm5569
MMRRC Submission 042856-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.416) question?
Stock # R5259 (G1)
Quality Score 225
Status Validated
Chromosome 6
Chromosomal Location 57408676-57409587 bp(+) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) T to A at 57409050 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Stop codon at position 125 (Y125*)
Ref Sequence ENSEMBL: ENSMUSP00000153815 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000176085] [ENSMUST00000226808] [ENSMUST00000227909]
AlphaFold K7N778
Predicted Effect probably null
Transcript: ENSMUST00000176085
AA Change: Y125*
SMART Domains Protein: ENSMUSP00000134973
Gene: ENSMUSG00000093679
AA Change: Y125*

DomainStartEndE-ValueType
Pfam:V1R 28 293 2.3e-51 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000226808
AA Change: Y125*
Predicted Effect probably null
Transcript: ENSMUST00000227909
AA Change: Y125*
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 97.0%
  • 20x: 94.7%
Validation Efficiency 100% (68/68)
Allele List at MGI
Other mutations in this stock
Total: 61 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abhd18 A C 3: 40,871,325 (GRCm39) T50P probably damaging Het
Adam5 T A 8: 25,300,850 (GRCm39) L226F possibly damaging Het
Adi1 T C 12: 28,725,544 (GRCm39) probably benign Het
Apc T C 18: 34,447,343 (GRCm39) V1379A probably benign Het
Atp13a4 G A 16: 29,275,428 (GRCm39) T352M probably damaging Het
Baat T A 4: 49,490,070 (GRCm39) N338I probably benign Het
Bdnf A G 2: 109,554,327 (GRCm39) T234A probably benign Het
Catsperd A C 17: 56,967,235 (GRCm39) T539P possibly damaging Het
Cd109 A T 9: 78,617,434 (GRCm39) T1311S probably benign Het
Ceacam18 T C 7: 43,286,536 (GRCm39) probably null Het
Cfap96 T C 8: 46,415,373 (GRCm39) E211G probably benign Het
Cfhr4 C T 1: 139,668,233 (GRCm39) C300Y probably damaging Het
Chsy3 T A 18: 59,543,318 (GRCm39) S819T probably damaging Het
Col4a4 G T 1: 82,431,614 (GRCm39) R1557S unknown Het
Ddx18 A G 1: 121,495,518 (GRCm39) probably null Het
Depdc5 C T 5: 33,095,635 (GRCm39) P824L probably damaging Het
Fam13c C G 10: 70,276,893 (GRCm39) A17G probably benign Het
Fermt1 T C 2: 132,748,685 (GRCm39) Y646C probably damaging Het
Fra10ac1 A G 19: 38,188,110 (GRCm39) S229P probably benign Het
Gbp8 A T 5: 105,198,845 (GRCm39) H23Q probably benign Het
Gdf2 T C 14: 33,666,788 (GRCm39) V170A probably benign Het
Gm15723 T C 10: 114,652,722 (GRCm39) noncoding transcript Het
Gm815 G A 19: 26,863,806 (GRCm39) V16I unknown Het
Ighv1-75 T A 12: 115,797,797 (GRCm39) K42* probably null Het
Isx A G 8: 75,619,473 (GRCm39) T222A probably benign Het
Itgax G A 7: 127,747,450 (GRCm39) D1018N probably damaging Het
Kcnc4 A G 3: 107,355,401 (GRCm39) F349S probably damaging Het
Lama3 A C 18: 12,598,565 (GRCm39) S991R probably damaging Het
Larp4b C T 13: 9,208,220 (GRCm39) A398V probably damaging Het
Ltbp1 A G 17: 75,670,357 (GRCm39) N1466S probably benign Het
Metrn A T 17: 26,015,514 (GRCm39) L67Q probably damaging Het
Morc1 G A 16: 48,451,132 (GRCm39) R937Q probably benign Het
Mta3 A G 17: 84,112,003 (GRCm39) Y577C probably damaging Het
Nalcn A G 14: 123,753,063 (GRCm39) F308L possibly damaging Het
Nat8 A T 6: 85,807,873 (GRCm39) S87T probably benign Het
Oplah A T 15: 76,185,410 (GRCm39) probably null Het
Or2ak6 A G 11: 58,592,778 (GRCm39) N84D probably benign Het
Or2ak6 A C 11: 58,592,779 (GRCm39) N84T possibly damaging Het
Or7e166 A G 9: 19,624,109 (GRCm39) probably null Het
Pcdh15 A T 10: 74,232,204 (GRCm39) I668L possibly damaging Het
Pecr A G 1: 72,316,444 (GRCm39) probably null Het
Plxna4 T C 6: 32,493,956 (GRCm39) E220G possibly damaging Het
Pnma8b A G 7: 16,679,199 (GRCm39) K61R unknown Het
Prl8a6 C T 13: 27,620,179 (GRCm39) W81* probably null Het
Rab33b C T 3: 51,392,033 (GRCm39) probably benign Het
Rbm33 T A 5: 28,557,772 (GRCm39) probably null Het
Relch A G 1: 105,649,101 (GRCm39) S747G probably benign Het
Reln C T 5: 22,308,395 (GRCm39) V325M possibly damaging Het
Rheb A C 5: 25,008,743 (GRCm39) D158E probably benign Het
Rhebl1 T A 15: 98,778,464 (GRCm39) probably benign Het
Rmdn2 T A 17: 79,975,446 (GRCm39) Y312N probably damaging Het
Scamp1 T G 13: 94,368,594 (GRCm39) N58T probably benign Het
Semp2l1 A T 1: 32,584,598 (GRCm39) C437* probably null Het
Slc35a1 C T 4: 34,683,322 (GRCm39) V53M probably benign Het
Slc35f3 A T 8: 127,115,872 (GRCm39) L266F probably damaging Het
Slc45a2 C T 15: 11,027,871 (GRCm39) T480I probably damaging Het
Ticrr T A 7: 79,344,471 (GRCm39) S1445R probably benign Het
Ttc23l T C 15: 10,515,236 (GRCm39) N381D probably damaging Het
Usp17ld T A 7: 102,899,781 (GRCm39) K384* probably null Het
Zfp738 G T 13: 67,817,805 (GRCm39) Q729K probably benign Het
Zfp770 T A 2: 114,027,674 (GRCm39) M132L probably benign Het
Other mutations in Vmn1r20
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01761:Vmn1r20 APN 6 57,408,725 (GRCm39) missense probably damaging 1.00
IGL02622:Vmn1r20 APN 6 57,409,583 (GRCm39) missense probably damaging 0.99
IGL02636:Vmn1r20 APN 6 57,408,746 (GRCm39) missense probably benign
R0006:Vmn1r20 UTSW 6 57,409,290 (GRCm39) missense probably damaging 0.99
R0079:Vmn1r20 UTSW 6 57,408,777 (GRCm39) missense possibly damaging 0.70
R0200:Vmn1r20 UTSW 6 57,409,084 (GRCm39) missense probably damaging 0.96
R1675:Vmn1r20 UTSW 6 57,408,937 (GRCm39) missense probably benign 0.00
R1734:Vmn1r20 UTSW 6 57,409,285 (GRCm39) missense probably damaging 1.00
R1883:Vmn1r20 UTSW 6 57,409,306 (GRCm39) missense probably benign 0.14
R2049:Vmn1r20 UTSW 6 57,408,943 (GRCm39) missense probably damaging 1.00
R2307:Vmn1r20 UTSW 6 57,409,121 (GRCm39) missense probably benign 0.03
R2346:Vmn1r20 UTSW 6 57,408,931 (GRCm39) missense possibly damaging 0.83
R4405:Vmn1r20 UTSW 6 57,409,042 (GRCm39) missense probably benign 0.02
R4946:Vmn1r20 UTSW 6 57,409,159 (GRCm39) missense probably damaging 0.98
R5321:Vmn1r20 UTSW 6 57,409,427 (GRCm39) missense probably benign 0.21
R5911:Vmn1r20 UTSW 6 57,408,774 (GRCm39) missense probably benign 0.16
R6042:Vmn1r20 UTSW 6 57,409,391 (GRCm39) missense possibly damaging 0.90
R6298:Vmn1r20 UTSW 6 57,409,112 (GRCm39) missense probably benign
R6314:Vmn1r20 UTSW 6 57,409,042 (GRCm39) missense probably benign 0.00
R6331:Vmn1r20 UTSW 6 57,408,655 (GRCm39) splice site probably null
R6482:Vmn1r20 UTSW 6 57,409,093 (GRCm39) missense probably benign 0.01
R9161:Vmn1r20 UTSW 6 57,408,759 (GRCm39) missense probably benign 0.00
R9165:Vmn1r20 UTSW 6 57,409,246 (GRCm39) missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- TCATTCACATAATGGTGTTCCTCAC -3'
(R):5'- CATCTCTGGAGGTTGTCACTG -3'

Sequencing Primer
(F):5'- GCTTACAGACATATTTGAGTCACTG -3'
(R):5'- CTCTGGAGGTTGTCACTGTAAAAATG -3'
Posted On 2016-07-06