Mutagenetix > Incidental Mutation

Incidental Mutation 'R5260:Clint1'

401388

Institutional Source

Beutler Lab

Gene Symbol

Clint1

Ensembl Gene

ENSMUSG00000006169

Gene Name

clathrin interactor 1

Synonyms

C530049I24Rik, Epn4

MMRRC Submission

042829-MU

Accession Numbers

Is this an essential gene?

Possibly non essential (E-score: 0.476) question?

Stock #

R5260 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

45852051-45910625 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 45907942 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Arginine at position 493 (W493R)

Ref Sequence

ENSEMBL: ENSMUSP00000104884 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000109260] [ENSMUST00000109261]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000109260
AA Change: W475R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000104883
Gene: ENSMUSG00000006169
AA Change: W475R

Domain	Start	End	E-Value	Type
ENTH	22	149	2.56e-61	SMART
low complexity region	262	279	N/A	INTRINSIC
low complexity region	311	323	N/A	INTRINSIC
low complexity region	332	357	N/A	INTRINSIC
low complexity region	427	438	N/A	INTRINSIC
low complexity region	540	563	N/A	INTRINSIC
low complexity region	569	607	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000109261
AA Change: W493R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000104884
Gene: ENSMUSG00000006169
AA Change: W493R

Domain	Start	End	E-Value	Type
ENTH	22	149	2.56e-61	SMART
low complexity region	262	279	N/A	INTRINSIC
low complexity region	311	323	N/A	INTRINSIC
low complexity region	332	357	N/A	INTRINSIC
low complexity region	427	438	N/A	INTRINSIC
low complexity region	558	581	N/A	INTRINSIC
low complexity region	587	625	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133715

Meta Mutation Damage Score

0.1220

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.1%
20x: 95.0%

Validation Efficiency

99% (77/78)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein with similarity to the epsin family of endocytic adapter proteins. The encoded protein interacts with clathrin, the adapter protein AP-1 and phosphoinositides. This protein may be involved in the formation of clathrin coated vesicles and trafficking between the trans-Golgi network and endosomes. Mutations in this gene are associated with a susceptibility to schizophrenia and psychotic disorders. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2010]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310007B03Rik	A	T	1: 93,159,978	V51E	probably damaging	Het
Abraxas2	A	T	7: 132,859,274	I14F	probably damaging	Het
Acin1	T	C	14: 54,642,822		probably benign	Het
Adamts9	C	A	6: 92,807,137	V1579L	probably benign	Het
Adra2a	T	A	19: 54,046,608	C132S	probably damaging	Het
Aif1	T	A	17: 35,171,941		probably null	Het
Atf5	A	T	7: 44,815,086	Y27*	probably null	Het
Atm	A	G	9: 53,506,611	S799P	probably damaging	Het
Bmp2k	T	G	5: 97,087,351		probably benign	Het
Chaf1a	C	T	17: 56,065,000	H723Y	probably damaging	Het
Cyb561a3	T	A	19: 10,587,866	V198D	possibly damaging	Het
Cyp2j8	T	C	4: 96,501,064	E174G	possibly damaging	Het
Cyp4v3	C	T	8: 45,306,980	G512S	probably damaging	Het
Dnah8	T	A	17: 30,700,419	V1122D	probably benign	Het
Doc2b	C	A	11: 75,786,163	G128V	probably damaging	Het
Dysf	T	C	6: 84,150,034	V1378A	probably damaging	Het
Efcab5	A	T	11: 77,137,651	S421T	possibly damaging	Het
Efcab6	T	G	15: 83,945,123	D672A	probably benign	Het
Eif2ak3	C	A	6: 70,893,129	H933Q	probably damaging	Het
Erc1	A	T	6: 119,761,159	N574K	probably damaging	Het
Eri2	A	T	7: 119,787,846		probably benign	Het
Faxc	A	G	4: 21,948,744	Y152C	probably damaging	Het
Fbxl7	T	A	15: 26,543,499	Y354F	probably damaging	Het
Fras1	T	A	5: 96,735,187	I2526N	possibly damaging	Het
Gm1966	A	G	7: 106,599,204		noncoding transcript	Het
Gm5424	A	T	10: 62,071,595		noncoding transcript	Het
Gm6728	T	C	6: 136,486,703		noncoding transcript	Het
Golgb1	A	T	16: 36,913,141	S917C	probably benign	Het
Gtpbp3	T	C	8: 71,489,418		probably benign	Het
Gusb	A	T	5: 129,999,988	Y220*	probably null	Het
Hmcn1	A	G	1: 150,595,861	V4914A	possibly damaging	Het
Iars2	C	A	1: 185,323,734	C211F	probably damaging	Het
Kif5b	A	G	18: 6,211,058	L802P	probably damaging	Het
Kif5c	A	G	2: 49,735,590	E624G	probably damaging	Het
Kmt2d	G	T	15: 98,842,860		probably benign	Het
Krt82	C	A	15: 101,548,388	G186C	possibly damaging	Het
Lca5	G	A	9: 83,423,223	R177C	probably damaging	Het
Mier1	T	C	4: 103,162,710	S318P	probably benign	Het
Obscn	A	T	11: 59,003,369	I1207N	probably damaging	Het
Olfr1161	A	C	2: 88,025,474	I251L	probably benign	Het
Olfr1261	A	G	2: 89,994,182	D263G	probably damaging	Het
Olfr1302	A	G	2: 111,781,181	Y287C	probably damaging	Het
Olfr607	A	G	7: 103,460,615	F198L	probably benign	Het
Oog4	C	T	4: 143,437,854	G369D	probably benign	Het
Plec	T	C	15: 76,176,624	T3060A	probably damaging	Het
Plekhh2	C	T	17: 84,577,165	T769I	probably damaging	Het
Prkaa1	A	T	15: 5,160,668	S65C	probably damaging	Het
Psma3	T	C	12: 70,984,642		probably benign	Het
Ptpn18	T	A	1: 34,463,510		probably benign	Het
Ptprv	T	C	1: 135,112,260		noncoding transcript	Het
Rac1	C	A	5: 143,508,131	V104L	probably benign	Het
Serpinb7	A	T	1: 107,434,749	N61I	possibly damaging	Het
Sirt7	A	C	11: 120,620,521		probably benign	Het
Srl	G	A	16: 4,482,895	R333*	probably null	Het
Srprb	A	T	9: 103,201,920	L756Q	probably damaging	Het
Tchhl1	T	C	3: 93,470,795	S269P	probably damaging	Het
Tdo2	C	T	3: 81,975,323		probably null	Het
Teddm1a	T	C	1: 153,891,900	Y37H	probably benign	Het
Tenm3	T	C	8: 48,236,855	Y1899C	probably damaging	Het
Tep1	T	C	14: 50,838,631	T1681A	probably benign	Het
Timm44	G	T	8: 4,275,919		probably null	Het
Trp73	A	G	4: 154,062,602	V322A	possibly damaging	Het
Tsr1	A	C	11: 74,905,955	E611A	probably damaging	Het
Unc80	A	G	1: 66,646,587	N2290S	possibly damaging	Het
Ush2a	T	C	1: 188,947,079	V4828A	possibly damaging	Het
Vps51	T	G	19: 6,071,033	E283D	probably benign	Het
Wnt9b	C	A	11: 103,732,049	S176I	possibly damaging	Het
Zfp329	A	G	7: 12,806,526		probably benign	Het
Zfp352	T	A	4: 90,224,460	V279D	probably damaging	Het
Zfp932	C	T	5: 110,009,635	Q400*	probably null	Het
Zxdc	T	A	6: 90,382,093	L569Q	probably damaging	Het

Other mutations in Clint1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01339:Clint1	APN	11	45909019	missense	probably benign	0.20
IGL01974:Clint1	APN	11	45909035	missense	probably benign	0.24
IGL02312:Clint1	APN	11	45894056	missense	probably damaging	1.00
R1440:Clint1	UTSW	11	45890783	missense	probably damaging	1.00
R1720:Clint1	UTSW	11	45887410	missense	probably damaging	0.99
R1722:Clint1	UTSW	11	45906406	missense	possibly damaging	0.68
R1736:Clint1	UTSW	11	45906177	splice site	probably null
R2012:Clint1	UTSW	11	45894092	missense	possibly damaging	0.77
R2334:Clint1	UTSW	11	45909028	missense	probably damaging	0.97
R5413:Clint1	UTSW	11	45886480	missense	probably damaging	1.00
R6331:Clint1	UTSW	11	45895081	missense	probably benign	0.14
R7343:Clint1	UTSW	11	45883763	missense	probably damaging	1.00
R7507:Clint1	UTSW	11	45908949	missense	possibly damaging	0.94
R8045:Clint1	UTSW	11	45890739	missense	possibly damaging	0.91
R8090:Clint1	UTSW	11	45887440	missense	probably damaging	1.00
R8488:Clint1	UTSW	11	45890630	missense	probably damaging	1.00
R8795:Clint1	UTSW	11	45884351	missense	probably damaging	0.98
R9021:Clint1	UTSW	11	45906215	missense	probably benign	0.00
R9034:Clint1	UTSW	11	45908955	missense	probably benign	0.00
R9034:Clint1	UTSW	11	45908956	missense	possibly damaging	0.56
R9117:Clint1	UTSW	11	45890735	missense	probably damaging	0.98
R9215:Clint1	UTSW	11	45883751	missense	probably damaging	1.00
R9380:Clint1	UTSW	11	45852161	missense	probably benign
R9500:Clint1	UTSW	11	45906367	missense	possibly damaging	0.94
X0005:Clint1	UTSW	11	45906430	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- AAGGCACCCGTGGTTATCTG -3'
(R):5'- ACGGTTACCTTCACATACATCC -3'

Sequencing Primer
(F):5'- CACCCGTGGTTATCTGATGAAG -3'
(R):5'- ATACATCCCTACCTATCCCCAGTG -3'

Posted On

2016-07-06