Incidental Mutation 'R5265:Palmd'
ID 401632
Institutional Source Beutler Lab
Gene Symbol Palmd
Ensembl Gene ENSMUSG00000033377
Gene Name palmdelphin
Synonyms 4631423C22Rik, PALML
MMRRC Submission 042833-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.073) question?
Stock # R5265 (G1)
Quality Score 225
Status Validated
Chromosome 3
Chromosomal Location 116711907-116762636 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 116717498 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Aspartic acid at position 333 (V333D)
Ref Sequence ENSEMBL: ENSMUSP00000113107 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000040097] [ENSMUST00000119557] [ENSMUST00000143611]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000040097
AA Change: V333D

PolyPhen 2 Score 0.205 (Sensitivity: 0.92; Specificity: 0.88)
SMART Domains Protein: ENSMUSP00000044693
Gene: ENSMUSG00000033377
AA Change: V333D

DomainStartEndE-ValueType
low complexity region 29 44 N/A INTRINSIC
Pfam:Paralemmin 65 512 3.6e-57 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000119557
AA Change: V333D

PolyPhen 2 Score 0.666 (Sensitivity: 0.86; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000113107
Gene: ENSMUSG00000033377
AA Change: V333D

DomainStartEndE-ValueType
low complexity region 29 44 N/A INTRINSIC
Pfam:Paralemmin 64 278 6.6e-14 PFAM
Pfam:Paralemmin 323 515 1.3e-15 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000143611
SMART Domains Protein: ENSMUSP00000122725
Gene: ENSMUSG00000033377

DomainStartEndE-ValueType
coiled coil region 4 94 N/A INTRINSIC
Meta Mutation Damage Score 0.1795 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 97.0%
  • 20x: 94.7%
Validation Efficiency 100% (59/59)
Allele List at MGI
Other mutations in this stock
Total: 56 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700017B05Rik A G 9: 57,166,177 (GRCm39) W66R probably damaging Het
Adamts3 A G 5: 90,009,411 (GRCm39) V84A possibly damaging Het
Caap1 C A 4: 94,389,465 (GRCm39) E290* probably null Het
Cant1 G A 11: 118,298,876 (GRCm39) R296C probably damaging Het
Cdh5 A T 8: 104,869,371 (GRCm39) H699L probably benign Het
Cfdp1 T C 8: 112,557,617 (GRCm39) T175A probably benign Het
Col4a4 C T 1: 82,471,312 (GRCm39) G681E unknown Het
Comtd1 G A 14: 21,898,861 (GRCm39) T27I probably benign Het
Copg1 T A 6: 87,869,252 (GRCm39) V155D probably damaging Het
Dag1 A G 9: 108,084,898 (GRCm39) Y748H possibly damaging Het
Dmwd T A 7: 18,814,206 (GRCm39) N285K possibly damaging Het
Dsp A G 13: 38,379,159 (GRCm39) E1968G possibly damaging Het
Ednra A G 8: 78,394,004 (GRCm39) I364T probably damaging Het
Elovl3 C A 19: 46,123,120 (GRCm39) T232K probably damaging Het
Ercc3 T A 18: 32,387,296 (GRCm39) I503N probably damaging Het
Ercc6 C A 14: 32,291,580 (GRCm39) A1008D probably benign Het
Gm10563 TTTC TTTCATTC 4: 155,698,953 (GRCm39) probably null Het
H2-DMb2 G T 17: 34,367,536 (GRCm39) V117F probably damaging Het
Helt A T 8: 46,745,470 (GRCm39) W138R probably damaging Het
Itga11 A T 9: 62,644,694 (GRCm39) H215L probably benign Het
Kcnn1 T A 8: 71,307,297 (GRCm39) I156F probably benign Het
Kdm1b A G 13: 47,216,445 (GRCm39) N272D probably benign Het
Kdm2b T C 5: 123,016,651 (GRCm39) T1161A probably damaging Het
Lin54 A G 5: 100,633,378 (GRCm39) L102P probably damaging Het
Mlh1 A C 9: 111,100,591 (GRCm39) M1R probably null Het
Naip2 G A 13: 100,289,068 (GRCm39) L1165F probably damaging Het
Nfkbiz A G 16: 55,640,004 (GRCm39) S118P probably damaging Het
Nkx3-2 T A 5: 41,919,191 (GRCm39) M266L probably benign Het
Npr1 T C 3: 90,364,309 (GRCm39) E771G probably benign Het
Obox8 C T 7: 14,065,954 (GRCm39) R188H probably benign Het
Odad1 T A 7: 45,596,859 (GRCm39) D395E probably damaging Het
Or5h19 A T 16: 58,856,506 (GRCm39) V198D possibly damaging Het
Or5p72 T A 7: 108,022,609 (GRCm39) V277E possibly damaging Het
Palm3 T C 8: 84,748,159 (GRCm39) probably null Het
Pikfyve A G 1: 65,306,988 (GRCm39) E1747G possibly damaging Het
Polr3a T C 14: 24,505,009 (GRCm39) I1084V possibly damaging Het
Ranbp3l T A 15: 9,037,077 (GRCm39) F127I probably benign Het
Rsl1d1 A G 16: 11,019,248 (GRCm39) F97L possibly damaging Het
Scaper A G 9: 55,771,830 (GRCm39) V362A probably benign Het
Scg5 A T 2: 113,607,210 (GRCm39) L192* probably null Het
Slc34a2 T C 5: 53,218,776 (GRCm39) I198T probably damaging Het
Slc45a3 T A 1: 131,905,932 (GRCm39) D318E possibly damaging Het
Sorl1 A G 9: 42,017,812 (GRCm39) M105T possibly damaging Het
St3gal5 T A 6: 72,126,115 (GRCm39) I320N probably damaging Het
Stx17 A G 4: 48,183,470 (GRCm39) probably benign Het
Syt5 C T 7: 4,544,074 (GRCm39) probably null Het
Thrap3 A G 4: 126,061,433 (GRCm39) S774P probably damaging Het
Tnc A T 4: 63,911,443 (GRCm39) M1376K probably benign Het
Tnks1bp1 T A 2: 84,893,098 (GRCm39) D1008E probably benign Het
Trav7-1 G T 14: 52,892,761 (GRCm39) A105S probably damaging Het
Vmn1r28 T A 6: 58,242,949 (GRCm39) V264D probably damaging Het
Vmn1r44 T C 6: 89,870,821 (GRCm39) V46A probably benign Het
Vmn2r10 A G 5: 109,143,586 (GRCm39) I788T probably damaging Het
Vmn2r78 T A 7: 86,569,332 (GRCm39) I75N probably damaging Het
Zfp821 T C 8: 110,450,991 (GRCm39) M328T probably damaging Het
Zfp995 G A 17: 22,099,604 (GRCm39) P210L possibly damaging Het
Other mutations in Palmd
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00703:Palmd APN 3 116,721,040 (GRCm39) splice site probably benign
IGL01112:Palmd APN 3 116,717,922 (GRCm39) missense probably damaging 1.00
IGL01484:Palmd APN 3 116,746,794 (GRCm39) splice site probably benign
IGL01527:Palmd APN 3 116,720,837 (GRCm39) nonsense probably null
IGL01561:Palmd APN 3 116,717,742 (GRCm39) missense probably damaging 0.99
IGL01975:Palmd APN 3 116,717,283 (GRCm39) missense probably benign 0.24
R0107:Palmd UTSW 3 116,717,725 (GRCm39) missense probably damaging 1.00
R1099:Palmd UTSW 3 116,716,874 (GRCm39) missense possibly damaging 0.71
R1552:Palmd UTSW 3 116,741,689 (GRCm39) splice site probably benign
R1613:Palmd UTSW 3 116,717,153 (GRCm39) missense probably damaging 1.00
R1710:Palmd UTSW 3 116,717,306 (GRCm39) missense probably damaging 1.00
R2090:Palmd UTSW 3 116,721,083 (GRCm39) missense probably damaging 1.00
R2869:Palmd UTSW 3 116,717,400 (GRCm39) missense possibly damaging 0.60
R2869:Palmd UTSW 3 116,717,400 (GRCm39) missense possibly damaging 0.60
R2870:Palmd UTSW 3 116,717,400 (GRCm39) missense possibly damaging 0.60
R2870:Palmd UTSW 3 116,717,400 (GRCm39) missense possibly damaging 0.60
R2871:Palmd UTSW 3 116,717,400 (GRCm39) missense possibly damaging 0.60
R2871:Palmd UTSW 3 116,717,400 (GRCm39) missense possibly damaging 0.60
R2872:Palmd UTSW 3 116,717,400 (GRCm39) missense possibly damaging 0.60
R2872:Palmd UTSW 3 116,717,400 (GRCm39) missense possibly damaging 0.60
R2873:Palmd UTSW 3 116,717,400 (GRCm39) missense possibly damaging 0.60
R3774:Palmd UTSW 3 116,721,312 (GRCm39) missense probably damaging 1.00
R3981:Palmd UTSW 3 116,717,472 (GRCm39) missense probably benign 0.01
R3982:Palmd UTSW 3 116,717,472 (GRCm39) missense probably benign 0.01
R3983:Palmd UTSW 3 116,717,472 (GRCm39) missense probably benign 0.01
R4955:Palmd UTSW 3 116,717,873 (GRCm39) missense probably damaging 1.00
R5103:Palmd UTSW 3 116,721,070 (GRCm39) missense probably damaging 1.00
R5261:Palmd UTSW 3 116,717,009 (GRCm39) missense probably benign 0.04
R5292:Palmd UTSW 3 116,717,393 (GRCm39) missense probably benign 0.00
R5499:Palmd UTSW 3 116,717,481 (GRCm39) missense probably benign 0.01
R5597:Palmd UTSW 3 116,717,225 (GRCm39) missense probably damaging 1.00
R5666:Palmd UTSW 3 116,717,750 (GRCm39) missense possibly damaging 0.55
R5817:Palmd UTSW 3 116,712,272 (GRCm39) missense probably benign 0.01
R6843:Palmd UTSW 3 116,717,864 (GRCm39) missense probably damaging 1.00
R6854:Palmd UTSW 3 116,717,112 (GRCm39) missense probably benign 0.06
R7052:Palmd UTSW 3 116,717,012 (GRCm39) missense probably benign 0.30
R7450:Palmd UTSW 3 116,721,292 (GRCm39) missense probably damaging 1.00
R8876:Palmd UTSW 3 116,720,899 (GRCm39) missense probably damaging 1.00
R9655:Palmd UTSW 3 116,716,840 (GRCm39) makesense probably null
R9681:Palmd UTSW 3 116,717,120 (GRCm39) missense probably benign 0.22
Z1177:Palmd UTSW 3 116,717,151 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- ATCCACATCAGAAGGCAGGG -3'
(R):5'- AAGAGTCATAAGCCCTGGACC -3'

Sequencing Primer
(F):5'- GGGAATGAACGATGTTATATCTGAC -3'
(R):5'- GTCATAAGCCCTGGACCAAATTTTC -3'
Posted On 2016-07-06