Incidental Mutation 'R5207:Tcf20'
| ID |
402109 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Tcf20
|
| Ensembl Gene |
ENSMUSG00000041852 |
| Gene Name |
transcription factor 20 |
| Synonyms |
stromelysin 1 PDGF responsive element binding protein, 2810438H08Rik, SPBP |
| MMRRC Submission |
042782-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly essential
(E-score: 0.618)
|
| Stock # |
R5207 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
15 |
| Chromosomal Location |
82808436-82987872 bp(-) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 82856185 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Histidine to Leucine
at position 355
(H355L)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000105136
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000048966]
[ENSMUST00000109510]
[ENSMUST00000229439]
[ENSMUST00000229547]
[ENSMUST00000230403]
|
| AlphaFold |
Q9EPQ8 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000048966
AA Change: H355L
PolyPhen 2
Score 0.978 (Sensitivity: 0.76; Specificity: 0.96)
|
| SMART Domains |
Protein: ENSMUSP00000048486
Gene: ENSMUSG00000041852
AA Change: H355L
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
42 |
74 |
N/A |
INTRINSIC |
|
coiled coil region
|
163 |
203 |
N/A |
INTRINSIC |
|
low complexity region
|
248 |
277 |
N/A |
INTRINSIC |
|
low complexity region
|
322 |
354 |
N/A |
INTRINSIC |
|
low complexity region
|
396 |
416 |
N/A |
INTRINSIC |
|
low complexity region
|
443 |
456 |
N/A |
INTRINSIC |
|
low complexity region
|
481 |
489 |
N/A |
INTRINSIC |
|
low complexity region
|
511 |
523 |
N/A |
INTRINSIC |
|
low complexity region
|
684 |
715 |
N/A |
INTRINSIC |
|
low complexity region
|
1047 |
1056 |
N/A |
INTRINSIC |
|
low complexity region
|
1532 |
1544 |
N/A |
INTRINSIC |
|
low complexity region
|
1577 |
1593 |
N/A |
INTRINSIC |
|
low complexity region
|
1602 |
1617 |
N/A |
INTRINSIC |
|
low complexity region
|
1793 |
1804 |
N/A |
INTRINSIC |
|
low complexity region
|
1860 |
1874 |
N/A |
INTRINSIC |
|
PHD
|
1913 |
1960 |
6.7e-6 |
SMART |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000109510
AA Change: H355L
PolyPhen 2
Score 0.978 (Sensitivity: 0.76; Specificity: 0.96)
|
| SMART Domains |
Protein: ENSMUSP00000105136
Gene: ENSMUSG00000041852
AA Change: H355L
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
42 |
74 |
N/A |
INTRINSIC |
|
coiled coil region
|
163 |
203 |
N/A |
INTRINSIC |
|
low complexity region
|
248 |
277 |
N/A |
INTRINSIC |
|
low complexity region
|
322 |
354 |
N/A |
INTRINSIC |
|
low complexity region
|
396 |
416 |
N/A |
INTRINSIC |
|
low complexity region
|
443 |
456 |
N/A |
INTRINSIC |
|
low complexity region
|
481 |
489 |
N/A |
INTRINSIC |
|
low complexity region
|
511 |
523 |
N/A |
INTRINSIC |
|
low complexity region
|
684 |
715 |
N/A |
INTRINSIC |
|
low complexity region
|
1047 |
1056 |
N/A |
INTRINSIC |
|
low complexity region
|
1532 |
1544 |
N/A |
INTRINSIC |
|
low complexity region
|
1577 |
1593 |
N/A |
INTRINSIC |
|
low complexity region
|
1602 |
1617 |
N/A |
INTRINSIC |
|
low complexity region
|
1793 |
1804 |
N/A |
INTRINSIC |
|
low complexity region
|
1860 |
1874 |
N/A |
INTRINSIC |
|
PHD
|
1913 |
1960 |
6.7e-6 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000229439
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000229547
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000230403
|
| Meta Mutation Damage Score |
0.0699 |
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 97.4%
- 20x: 95.7%
|
| Validation Efficiency |
97% (60/62) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a transcription factor that recognizes the platelet-derived growth factor-responsive element in the matrix metalloproteinase 3 promoter. The encoded protein is thought to be a transcriptional coactivator, enhancing the activity of transcription factors such as JUN and SP1. Mutations in this gene are associated with autism spectrum disorders. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2015]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 58 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Ahctf1 |
A |
T |
1: 179,793,594 (GRCm38) |
|
probably benign |
Het |
| Alg6 |
C |
T |
4: 99,719,194 (GRCm38) |
L15F |
possibly damaging |
Het |
| Allc |
T |
A |
12: 28,555,326 (GRCm38) |
M325L |
probably benign |
Het |
| Ap3b2 |
T |
C |
7: 81,476,769 (GRCm38) |
N361S |
possibly damaging |
Het |
| Bmp8b |
A |
G |
4: 123,115,921 (GRCm38) |
|
probably benign |
Het |
| Borcs6 |
A |
T |
11: 69,060,848 (GRCm38) |
T351S |
probably damaging |
Het |
| Casc1 |
A |
T |
6: 145,179,068 (GRCm38) |
D510E |
probably damaging |
Het |
| Ccar1 |
T |
C |
10: 62,753,281 (GRCm38) |
R808G |
unknown |
Het |
| Celsr3 |
A |
T |
9: 108,832,759 (GRCm38) |
T1480S |
probably benign |
Het |
| Chdh |
C |
T |
14: 30,031,361 (GRCm38) |
P76S |
probably damaging |
Het |
| Chmp7 |
T |
C |
14: 69,732,306 (GRCm38) |
S62G |
probably benign |
Het |
| Cldn23 |
A |
T |
8: 35,826,028 (GRCm38) |
V102E |
probably damaging |
Het |
| Csn2 |
G |
A |
5: 87,694,962 (GRCm38) |
Q69* |
probably null |
Het |
| Ctrc |
A |
C |
4: 141,840,384 (GRCm38) |
I136S |
probably damaging |
Het |
| Cysltr2 |
A |
C |
14: 73,029,511 (GRCm38) |
L253R |
probably damaging |
Het |
| Ddr2 |
G |
A |
1: 169,984,961 (GRCm38) |
T654M |
probably damaging |
Het |
| Derl2 |
G |
T |
11: 71,019,247 (GRCm38) |
|
probably null |
Het |
| Dock5 |
T |
C |
14: 67,776,284 (GRCm38) |
S1330G |
probably benign |
Het |
| Emp3 |
T |
C |
7: 45,919,949 (GRCm38) |
N56S |
probably benign |
Het |
| Fam161a |
A |
T |
11: 23,020,583 (GRCm38) |
K195* |
probably null |
Het |
| Fam71b |
T |
C |
11: 46,405,163 (GRCm38) |
S121P |
probably benign |
Het |
| Ficd |
T |
A |
5: 113,737,011 (GRCm38) |
V47E |
probably benign |
Het |
| Gbp10 |
T |
C |
5: 105,224,709 (GRCm38) |
T123A |
probably benign |
Het |
| Gdf7 |
C |
T |
12: 8,298,371 (GRCm38) |
A309T |
unknown |
Het |
| Gm14486 |
G |
T |
2: 30,658,560 (GRCm38) |
|
noncoding transcript |
Het |
| Herc1 |
T |
A |
9: 66,399,869 (GRCm38) |
C990* |
probably null |
Het |
| Itgb4 |
T |
C |
11: 116,006,539 (GRCm38) |
V1530A |
probably damaging |
Het |
| Itpka |
G |
A |
2: 119,750,493 (GRCm38) |
R374H |
probably damaging |
Het |
| Lacc1 |
T |
A |
14: 77,034,154 (GRCm38) |
|
probably null |
Het |
| Med23 |
A |
T |
10: 24,895,836 (GRCm38) |
K225* |
probably null |
Het |
| Mrgpra3 |
T |
A |
7: 47,590,161 (GRCm38) |
T6S |
probably benign |
Het |
| Mroh7 |
T |
A |
4: 106,721,386 (GRCm38) |
N32Y |
probably damaging |
Het |
| Mrps2 |
A |
G |
2: 28,469,751 (GRCm38) |
R207G |
probably damaging |
Het |
| Mup20 |
A |
C |
4: 62,051,586 (GRCm38) |
|
probably null |
Het |
| Nagpa |
A |
G |
16: 5,199,614 (GRCm38) |
|
probably null |
Het |
| Nek3 |
A |
T |
8: 22,132,227 (GRCm38) |
|
probably benign |
Het |
| Nes |
G |
A |
3: 87,978,628 (GRCm38) |
G1398E |
probably damaging |
Het |
| Nf1 |
G |
T |
11: 79,454,189 (GRCm38) |
V1323L |
probably damaging |
Het |
| Olfr1416 |
A |
T |
1: 92,479,872 (GRCm38) |
F250I |
probably benign |
Het |
| Olfr1446 |
T |
A |
19: 12,890,437 (GRCm38) |
I47F |
probably benign |
Het |
| Olfr791 |
T |
C |
10: 129,526,904 (GRCm38) |
F226L |
probably benign |
Het |
| Paqr8 |
G |
T |
1: 20,935,258 (GRCm38) |
C212F |
probably benign |
Het |
| Pcdhb1 |
T |
C |
18: 37,266,462 (GRCm38) |
Y489H |
probably damaging |
Het |
| Piwil2 |
T |
C |
14: 70,392,517 (GRCm38) |
K683E |
probably damaging |
Het |
| Pjvk |
A |
C |
2: 76,650,390 (GRCm38) |
|
probably null |
Het |
| Pkd1l3 |
A |
T |
8: 109,633,191 (GRCm38) |
S893C |
probably damaging |
Het |
| Plxna2 |
A |
G |
1: 194,788,899 (GRCm38) |
T993A |
probably benign |
Het |
| Ppp2r2b |
A |
T |
18: 42,688,352 (GRCm38) |
I247N |
probably damaging |
Het |
| Rac2 |
T |
C |
15: 78,565,454 (GRCm38) |
N92S |
probably damaging |
Het |
| Senp2 |
A |
T |
16: 22,041,380 (GRCm38) |
H501L |
possibly damaging |
Het |
| Snx29 |
A |
T |
16: 11,738,363 (GRCm38) |
I753F |
probably damaging |
Het |
| Tex2 |
T |
C |
11: 106,546,840 (GRCm38) |
D668G |
unknown |
Het |
| Tlr12 |
G |
A |
4: 128,616,709 (GRCm38) |
Q583* |
probably null |
Het |
| Tmem119 |
T |
C |
5: 113,795,228 (GRCm38) |
I171V |
probably damaging |
Het |
| Ube2m |
C |
T |
7: 13,036,322 (GRCm38) |
|
probably null |
Het |
| Vmn2r25 |
A |
T |
6: 123,840,103 (GRCm38) |
I173N |
probably damaging |
Het |
| Whrn |
A |
T |
4: 63,432,714 (GRCm38) |
V15E |
probably damaging |
Het |
| Zfp558 |
A |
C |
9: 18,457,000 (GRCm38) |
V164G |
possibly damaging |
Het |
|
| Other mutations in Tcf20 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00087:Tcf20
|
APN |
15 |
82,854,895 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL00229:Tcf20
|
APN |
15 |
82,857,142 (GRCm38) |
missense |
possibly damaging |
0.50 |
|
IGL00539:Tcf20
|
APN |
15 |
82,852,756 (GRCm38) |
missense |
probably benign |
0.41 |
|
IGL00576:Tcf20
|
APN |
15 |
82,856,075 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01135:Tcf20
|
APN |
15 |
82,853,900 (GRCm38) |
missense |
probably benign |
|
|
IGL01670:Tcf20
|
APN |
15 |
82,855,363 (GRCm38) |
missense |
possibly damaging |
0.77 |
|
IGL01684:Tcf20
|
APN |
15 |
82,857,160 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01767:Tcf20
|
APN |
15 |
82,856,008 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01825:Tcf20
|
APN |
15 |
82,852,966 (GRCm38) |
missense |
probably benign |
|
|
IGL01834:Tcf20
|
APN |
15 |
82,855,697 (GRCm38) |
missense |
probably damaging |
0.99 |
|
IGL01836:Tcf20
|
APN |
15 |
82,855,155 (GRCm38) |
missense |
probably damaging |
0.99 |
|
IGL02415:Tcf20
|
APN |
15 |
82,853,459 (GRCm38) |
missense |
probably benign |
0.28 |
|
IGL02731:Tcf20
|
APN |
15 |
82,853,237 (GRCm38) |
missense |
probably benign |
0.00 |
|
IGL02739:Tcf20
|
APN |
15 |
82,856,080 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL03058:Tcf20
|
APN |
15 |
82,852,004 (GRCm38) |
missense |
probably damaging |
0.96 |
|
PIT4131001:Tcf20
|
UTSW |
15 |
82,851,584 (GRCm38) |
missense |
probably damaging |
0.96 |
|
R0184:Tcf20
|
UTSW |
15 |
82,852,300 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R0207:Tcf20
|
UTSW |
15 |
82,855,085 (GRCm38) |
missense |
probably benign |
|
|
R0732:Tcf20
|
UTSW |
15 |
82,852,303 (GRCm38) |
missense |
probably benign |
0.07 |
|
R1502:Tcf20
|
UTSW |
15 |
82,855,576 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1575:Tcf20
|
UTSW |
15 |
82,855,492 (GRCm38) |
missense |
probably benign |
0.19 |
|
R1719:Tcf20
|
UTSW |
15 |
82,852,777 (GRCm38) |
missense |
probably benign |
0.03 |
|
R1997:Tcf20
|
UTSW |
15 |
82,857,230 (GRCm38) |
nonsense |
probably null |
|
|
R2152:Tcf20
|
UTSW |
15 |
82,855,602 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2173:Tcf20
|
UTSW |
15 |
82,854,692 (GRCm38) |
missense |
possibly damaging |
0.62 |
|
R2288:Tcf20
|
UTSW |
15 |
82,851,685 (GRCm38) |
missense |
probably benign |
|
|
R4049:Tcf20
|
UTSW |
15 |
82,853,429 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4496:Tcf20
|
UTSW |
15 |
82,854,984 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4704:Tcf20
|
UTSW |
15 |
82,851,727 (GRCm38) |
missense |
possibly damaging |
0.49 |
|
R4892:Tcf20
|
UTSW |
15 |
82,854,199 (GRCm38) |
missense |
possibly damaging |
0.80 |
|
R5164:Tcf20
|
UTSW |
15 |
82,856,603 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5219:Tcf20
|
UTSW |
15 |
82,856,381 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5228:Tcf20
|
UTSW |
15 |
82,855,955 (GRCm38) |
missense |
probably benign |
0.01 |
|
R5288:Tcf20
|
UTSW |
15 |
82,855,709 (GRCm38) |
missense |
possibly damaging |
0.50 |
|
R5374:Tcf20
|
UTSW |
15 |
82,851,957 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R5384:Tcf20
|
UTSW |
15 |
82,856,199 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R5677:Tcf20
|
UTSW |
15 |
82,853,242 (GRCm38) |
missense |
probably benign |
0.05 |
|
R5897:Tcf20
|
UTSW |
15 |
82,851,783 (GRCm38) |
nonsense |
probably null |
|
|
R6089:Tcf20
|
UTSW |
15 |
82,853,208 (GRCm38) |
missense |
probably benign |
0.06 |
|
R6196:Tcf20
|
UTSW |
15 |
82,851,986 (GRCm38) |
missense |
possibly damaging |
0.89 |
|
R6229:Tcf20
|
UTSW |
15 |
82,854,880 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6448:Tcf20
|
UTSW |
15 |
82,852,660 (GRCm38) |
missense |
probably benign |
|
|
R6688:Tcf20
|
UTSW |
15 |
82,854,535 (GRCm38) |
missense |
possibly damaging |
0.68 |
|
R7009:Tcf20
|
UTSW |
15 |
82,854,682 (GRCm38) |
missense |
probably benign |
0.07 |
|
R7051:Tcf20
|
UTSW |
15 |
82,856,078 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7215:Tcf20
|
UTSW |
15 |
82,853,489 (GRCm38) |
missense |
probably benign |
|
|
R7486:Tcf20
|
UTSW |
15 |
82,853,734 (GRCm38) |
missense |
possibly damaging |
0.78 |
|
R7583:Tcf20
|
UTSW |
15 |
82,855,276 (GRCm38) |
missense |
possibly damaging |
0.82 |
|
R7678:Tcf20
|
UTSW |
15 |
82,851,565 (GRCm38) |
missense |
possibly damaging |
0.92 |
|
R8090:Tcf20
|
UTSW |
15 |
82,856,006 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8156:Tcf20
|
UTSW |
15 |
82,852,937 (GRCm38) |
missense |
probably benign |
0.00 |
|
R8191:Tcf20
|
UTSW |
15 |
82,853,405 (GRCm38) |
nonsense |
probably null |
|
|
R8259:Tcf20
|
UTSW |
15 |
82,852,273 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8339:Tcf20
|
UTSW |
15 |
82,852,676 (GRCm38) |
missense |
probably benign |
0.04 |
|
R8447:Tcf20
|
UTSW |
15 |
82,853,236 (GRCm38) |
missense |
possibly damaging |
0.77 |
|
R8497:Tcf20
|
UTSW |
15 |
82,855,951 (GRCm38) |
missense |
probably benign |
0.07 |
|
R8728:Tcf20
|
UTSW |
15 |
82,854,957 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8829:Tcf20
|
UTSW |
15 |
82,855,714 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8861:Tcf20
|
UTSW |
15 |
82,852,525 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R9177:Tcf20
|
UTSW |
15 |
82,856,504 (GRCm38) |
missense |
probably benign |
0.00 |
|
R9268:Tcf20
|
UTSW |
15 |
82,856,504 (GRCm38) |
missense |
probably benign |
0.00 |
|
R9294:Tcf20
|
UTSW |
15 |
82,852,696 (GRCm38) |
missense |
probably benign |
0.11 |
|
R9648:Tcf20
|
UTSW |
15 |
82,855,675 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9675:Tcf20
|
UTSW |
15 |
82,856,785 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9729:Tcf20
|
UTSW |
15 |
82,851,836 (GRCm38) |
missense |
probably benign |
0.25 |
|
RF019:Tcf20
|
UTSW |
15 |
82,851,593 (GRCm38) |
missense |
probably benign |
0.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGGAGATTCTCACCACTCTGC -3'
(R):5'- TAATGCACAGGCTTATGGAACAC -3'
Sequencing Primer
(F):5'- GGAGATTCTCACCACTCTGCATGAG -3'
(R):5'- GCAAAGATTCCACCAGG -3'
|
| Posted On |
2016-07-22 |
Incidental Mutation