Mutagenetix > Incidental Mutation

Incidental Mutation 'R5223:Wdr78'

402416

Institutional Source

Beutler Lab

Gene Symbol

Wdr78

Ensembl Gene

ENSMUSG00000035126

Gene Name

WD repeat domain 78

Synonyms

MMRRC Submission

042796-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.073) question?

Stock #

R5223 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

103038065-103114555 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 103049403 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Serine to Cysteine at position 738 (S738C)

Ref Sequence

ENSEMBL: ENSMUSP00000102481 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000036451] [ENSMUST00000036557] [ENSMUST00000106868] [ENSMUST00000116316]

AlphaFold

E9PYY5

Predicted Effect

probably benign
Transcript: ENSMUST00000036451

SMART Domains

Protein: ENSMUSP00000037588
Gene: ENSMUSG00000035126

Domain	Start	End	E-Value	Type
low complexity region	12	20	N/A	INTRINSIC
low complexity region	32	43	N/A	INTRINSIC
low complexity region	138	157	N/A	INTRINSIC
low complexity region	189	206	N/A	INTRINSIC
low complexity region	219	234	N/A	INTRINSIC
low complexity region	382	390	N/A	INTRINSIC
low complexity region	399	423	N/A	INTRINSIC
internal_repeat_1	447	466	2.11e-5	PROSPERO
WD40	485	524	1.85e-3	SMART
WD40	534	581	5.7e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000036557

SMART Domains

Protein: ENSMUSP00000042272
Gene: ENSMUSG00000035126

Domain	Start	End	E-Value	Type
low complexity region	59	67	N/A	INTRINSIC
low complexity region	76	100	N/A	INTRINSIC
WD40	133	172	9.24e-4	SMART
WD40	182	229	5.7e1	SMART
low complexity region	249	261	N/A	INTRINSIC
Blast:WD40	262	296	2e-12	BLAST

Predicted Effect

possibly damaging
Transcript: ENSMUST00000106868
AA Change: S738C

PolyPhen 2 Score 0.874 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000102481
Gene: ENSMUSG00000035126
AA Change: S738C

Domain	Start	End	E-Value	Type
low complexity region	12	20	N/A	INTRINSIC
low complexity region	32	43	N/A	INTRINSIC
low complexity region	138	157	N/A	INTRINSIC
low complexity region	189	206	N/A	INTRINSIC
low complexity region	219	234	N/A	INTRINSIC
low complexity region	382	390	N/A	INTRINSIC
low complexity region	399	423	N/A	INTRINSIC
internal_repeat_1	447	466	8.61e-5	PROSPERO
WD40	485	524	1.85e-3	SMART
WD40	534	581	5.7e1	SMART
low complexity region	601	613	N/A	INTRINSIC
Blast:WD40	614	648	3e-12	BLAST
WD40	652	692	2.38e-6	SMART
WD40	695	734	1.48e-2	SMART
WD40	739	779	6.14e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000116316

SMART Domains

Protein: ENSMUSP00000112018
Gene: ENSMUSG00000035126

Domain	Start	End	E-Value	Type
low complexity region	12	20	N/A	INTRINSIC
low complexity region	32	43	N/A	INTRINSIC
low complexity region	138	157	N/A	INTRINSIC
low complexity region	189	206	N/A	INTRINSIC
low complexity region	219	234	N/A	INTRINSIC
low complexity region	382	390	N/A	INTRINSIC
low complexity region	399	423	N/A	INTRINSIC
internal_repeat_1	447	466	2.11e-5	PROSPERO
WD40	485	524	1.85e-3	SMART
WD40	534	581	5.7e1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136355

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138960

Coding Region Coverage

1x: 99.2%
3x: 98.4%
10x: 96.6%
20x: 93.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aatk	C	T	11: 120,013,452	V273M	possibly damaging	Het
Acin1	CCGC	CC	14: 54,642,941		probably null	Het
Acvr1b	T	A	15: 101,193,976	C46S	probably damaging	Het
Ahi1	A	T	10: 20,970,919	H416L	possibly damaging	Het
Aspm	T	A	1: 139,478,334	L1653Q	probably damaging	Het
Cacna1a	G	A	8: 84,587,195	V1533M	possibly damaging	Het
Ccdc33	C	T	9: 58,032,984	E502K	possibly damaging	Het
Ctnnd1	C	T	2: 84,616,789	V371M	probably damaging	Het
Cyp2a12	A	T	7: 27,036,463		probably null	Het
Ep400	A	G	5: 110,668,630	V2675A	probably damaging	Het
Foxh1	T	A	15: 76,668,729		probably null	Het
Gad1-ps	G	A	10: 99,445,147		noncoding transcript	Het
Gm10093	A	G	17: 78,492,438	E286G	probably benign	Het
Gm13078	T	A	4: 143,728,021	S296R	probably benign	Het
Gpnmb	C	T	6: 49,056,205	T539M	probably benign	Het
Hspa9	A	G	18: 34,952,671		probably null	Het
Hspg2	T	C	4: 137,543,914	L2454P	probably damaging	Het
Ift140	T	A	17: 25,035,812	I422N	probably benign	Het
Igkv6-32	T	C	6: 70,074,223	S50G	probably benign	Het
Il23r	T	A	6: 67,486,170	Y113F	probably benign	Het
Kcnt1	A	G	2: 25,903,422	D636G	probably benign	Het
Klhl41	G	A	2: 69,679,827	W569*	probably null	Het
Klra4	T	A	6: 130,062,147	D94V	probably damaging	Het
Lca5	T	A	9: 83,398,613	H378L	probably benign	Het
Lhx8	T	A	3: 154,321,644	T254S	probably damaging	Het
Lrch3	C	T	16: 32,914,397	R86W	probably damaging	Het
Lrp2	T	A	2: 69,524,053	N477I	probably damaging	Het
Man2a1	T	A	17: 64,712,271	I710K	probably benign	Het
Ncor1	A	T	11: 62,339,000	Y881N	probably damaging	Het
Nhsl1	T	A	10: 18,526,326	V1100E	probably damaging	Het
Olfr1208	T	C	2: 88,897,334	T88A	probably benign	Het
Olfr486	A	G	7: 108,172,708	V12A	probably benign	Het
Olfr855	T	C	9: 19,585,026	V163A	probably benign	Het
Oprk1	T	C	1: 5,589,296	V83A	probably benign	Het
Pacs1	C	T	19: 5,145,141	V472I	probably benign	Het
Pard3b	T	C	1: 62,344,113	Y789H	probably damaging	Het
Pcdha2	T	C	18: 36,940,791	Y492H	probably damaging	Het
Pcnt	T	C	10: 76,380,272	N2261D	probably damaging	Het
Pex5l	A	T	3: 32,958,796	S15T	probably damaging	Het
Plekhg4	A	G	8: 105,378,949	N682S	probably benign	Het
Poc5	A	T	13: 96,402,955	M335L	probably benign	Het
Polr1a	C	T	6: 71,967,907	R1316W	possibly damaging	Het
Pp2d1	T	C	17: 53,507,845	H617R	probably benign	Het
Prpsap1	T	C	11: 116,488,148	K65E	probably benign	Het
Ptgfrn	T	C	3: 101,045,593	E775G	probably benign	Het
Ptprc	T	A	1: 138,117,862	I87F	probably benign	Het
Rbbp8	C	A	18: 11,721,690	A324E	probably benign	Het
Rfx6	G	T	10: 51,677,996	G63*	probably null	Het
Rpl37a	T	C	1: 72,712,149	M47T	probably benign	Het
Samm50	T	G	15: 84,200,630	N187K	probably benign	Het
Skiv2l	A	G	17: 34,845,166		probably null	Het
Slamf9	T	C	1: 172,476,232	I48T	possibly damaging	Het
Slc2a12	A	G	10: 22,702,032	K576E	probably damaging	Het
Slc4a10	G	A	2: 62,253,366	G388S	probably damaging	Het
Smtn	G	T	11: 3,529,530	N512K	probably benign	Het
Sntb1	C	G	15: 55,642,795	G461R	probably damaging	Het
Sspo	A	G	6: 48,478,324	Y3040C	probably damaging	Het
Stat1	T	A	1: 52,144,242	V389E	probably damaging	Het
Sult5a1	A	T	8: 123,145,422	M227K	probably damaging	Het
Thsd4	T	C	9: 60,057,042	D389G	probably damaging	Het
Tnxb	T	C	17: 34,704,078	V2545A	possibly damaging	Het
Tpo	T	A	12: 30,092,590	I712F	probably damaging	Het
Trim62	T	C	4: 128,909,411	V418A	probably damaging	Het
Uqcrc1	C	A	9: 108,942,156	H95N	probably damaging	Het
Vmn2r114	ATTT	ATT	17: 23,290,932		probably null	Het
Vmn2r66	T	C	7: 85,007,885	D104G	probably benign	Het
Wdr26	T	C	1: 181,187,686	I371V	probably benign	Het
Zfp273	T	G	13: 67,826,179	C475W	probably damaging	Het
Zfp738	G	T	13: 67,673,063	T55K	probably damaging	Het
Zmym2	A	G	14: 56,946,514	I978V	probably benign	Het

Other mutations in Wdr78

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00505:Wdr78	APN	4	103103242	missense	possibly damaging	0.77
IGL01508:Wdr78	APN	4	103072687	missense	possibly damaging	0.94
IGL01509:Wdr78	APN	4	103072687	missense	possibly damaging	0.94
IGL01511:Wdr78	APN	4	103048361	missense	possibly damaging	0.81
IGL01693:Wdr78	APN	4	103087330	splice site	probably null
IGL01731:Wdr78	APN	4	103062435	missense	probably benign	0.01
IGL02033:Wdr78	APN	4	103066293	missense	possibly damaging	0.58
IGL02100:Wdr78	APN	4	103050149	missense	probably damaging	1.00
IGL02218:Wdr78	APN	4	103096774	missense	probably damaging	1.00
IGL02226:Wdr78	APN	4	103090398	missense	probably benign	0.00
IGL02476:Wdr78	APN	4	103087348	missense	possibly damaging	0.46
IGL02929:Wdr78	APN	4	103059991	nonsense	probably null
R0070:Wdr78	UTSW	4	103059934	missense	probably damaging	1.00
R0377:Wdr78	UTSW	4	103048259	missense	probably damaging	1.00
R0433:Wdr78	UTSW	4	103103253	missense	probably benign	0.41
R0518:Wdr78	UTSW	4	103064530	nonsense	probably null
R0538:Wdr78	UTSW	4	103096618	missense	possibly damaging	0.65
R0624:Wdr78	UTSW	4	103072857	splice site	probably benign
R0894:Wdr78	UTSW	4	103049386	intron	probably benign
R1463:Wdr78	UTSW	4	103087418	missense	possibly damaging	0.95
R1818:Wdr78	UTSW	4	103072657	missense	possibly damaging	0.67
R2073:Wdr78	UTSW	4	103050193	missense	probably damaging	1.00
R2075:Wdr78	UTSW	4	103050193	missense	probably damaging	1.00
R2436:Wdr78	UTSW	4	103066352	missense	probably benign	0.01
R2851:Wdr78	UTSW	4	103096661	missense	probably benign	0.12
R2852:Wdr78	UTSW	4	103096661	missense	probably benign	0.12
R2853:Wdr78	UTSW	4	103050158	missense	possibly damaging	0.90
R4491:Wdr78	UTSW	4	103066399	missense	probably benign	0.04
R4792:Wdr78	UTSW	4	103072684	missense	possibly damaging	0.94
R5290:Wdr78	UTSW	4	103049533	missense	probably benign	0.00
R5465:Wdr78	UTSW	4	103049561	missense	probably damaging	1.00
R5975:Wdr78	UTSW	4	103049589	missense	probably benign	0.03
R6239:Wdr78	UTSW	4	103066443	missense	probably benign
R6304:Wdr78	UTSW	4	103087356	missense	probably benign	0.35
R6456:Wdr78	UTSW	4	103049549	missense	probably benign	0.00
R6467:Wdr78	UTSW	4	103049561	missense	probably damaging	1.00
R6813:Wdr78	UTSW	4	103048326	missense	probably benign	0.26
R7161:Wdr78	UTSW	4	103096616	missense	probably benign	0.28
R7198:Wdr78	UTSW	4	103062413	missense	probably damaging	0.98
R7208:Wdr78	UTSW	4	103066352	missense	probably benign	0.00
R7320:Wdr78	UTSW	4	103050187	missense	possibly damaging	0.68
R7742:Wdr78	UTSW	4	103090433	missense	probably benign
R7939:Wdr78	UTSW	4	103096601	nonsense	probably null
R8120:Wdr78	UTSW	4	103066334	missense	probably damaging	1.00
R8353:Wdr78	UTSW	4	103059916	missense	possibly damaging	0.63
R8453:Wdr78	UTSW	4	103059916	missense	possibly damaging	0.63
R8813:Wdr78	UTSW	4	103090500	missense	possibly damaging	0.53
R8870:Wdr78	UTSW	4	103087332	critical splice donor site	probably null
R8909:Wdr78	UTSW	4	103087410	missense	possibly damaging	0.91
R8957:Wdr78	UTSW	4	103096753	missense	probably damaging	1.00
R9035:Wdr78	UTSW	4	103048302	nonsense	probably null
R9060:Wdr78	UTSW	4	103090553	missense	probably benign	0.06
R9132:Wdr78	UTSW	4	103059733	missense	probably damaging	1.00
R9141:Wdr78	UTSW	4	103049546	missense	probably damaging	0.98
R9188:Wdr78	UTSW	4	103082135	missense
R9426:Wdr78	UTSW	4	103049546	missense	probably damaging	0.98
Z1176:Wdr78	UTSW	4	103072771	missense	probably benign	0.08

Predicted Primers

PCR Primer
(F):5'- CAAGGGATGGCTTGTTTAAGTAGC -3'
(R):5'- ACATGGAACCCATTCTGTCCC -3'

Sequencing Primer
(F):5'- TAGAGTCACAGTGCTCTC -3'
(R):5'- GTCCCGATGTCTTCTTGAGCTG -3'

Posted On

2016-07-22