Incidental Mutation 'R5227:Ranbp3l'
ID402699
Institutional Source Beutler Lab
Gene Symbol Ranbp3l
Ensembl Gene ENSMUSG00000048424
Gene NameRAN binding protein 3-like
Synonyms
MMRRC Submission 042800-MU
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.114) question?
Stock #R5227 (G1)
Quality Score225
Status Not validated
Chromosome15
Chromosomal Location8967949-9067335 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to A at 9007312 bp
ZygosityHeterozygous
Amino Acid Change Valine to Aspartic acid at position 16 (V16D)
Ref Sequence ENSEMBL: ENSMUSP00000154327 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000053308] [ENSMUST00000166524] [ENSMUST00000227191]
Predicted Effect probably damaging
Transcript: ENSMUST00000053308
AA Change: V152D

PolyPhen 2 Score 0.965 (Sensitivity: 0.78; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000055750
Gene: ENSMUSG00000048424
AA Change: V152D

DomainStartEndE-ValueType
low complexity region 19 31 N/A INTRINSIC
low complexity region 118 129 N/A INTRINSIC
low complexity region 191 197 N/A INTRINSIC
RanBD 302 430 4.52e-13 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000166524
SMART Domains Protein: ENSMUSP00000130916
Gene: ENSMUSG00000048424

DomainStartEndE-ValueType
low complexity region 19 31 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000227191
AA Change: V16D

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)
Predicted Effect noncoding transcript
Transcript: ENSMUST00000228227
Coding Region Coverage
  • 1x: 99.5%
  • 3x: 99.0%
  • 10x: 98.2%
  • 20x: 97.2%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 55 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcg8 T C 17: 84,691,821 L115P probably damaging Het
Adgrb3 A C 1: 25,093,952 M481R possibly damaging Het
Adgrd1 C A 5: 129,122,583 N161K probably benign Het
Alx4 T A 2: 93,677,380 V340D probably damaging Het
Arid1a A G 4: 133,680,405 S2264P unknown Het
Azi2 A T 9: 118,047,458 H14L probably damaging Het
Camsap2 A G 1: 136,274,891 probably benign Het
Ccpg1 T A 9: 73,012,072 L323* probably null Het
Cpsf1 A T 15: 76,598,948 I943N probably damaging Het
Crebrf T A 17: 26,759,765 Y476N probably damaging Het
Defb10 T A 8: 21,861,878 Y46* probably null Het
Dock3 A G 9: 106,986,070 L703P probably damaging Het
Ebf2 A T 14: 67,247,069 I181F probably damaging Het
Eif3e T A 15: 43,251,521 M420L probably benign Het
Elmsan1 A T 12: 84,152,887 F1020I probably benign Het
Emilin3 T A 2: 160,909,265 Q188L probably damaging Het
Fbxl4 C T 4: 22,376,840 T92M probably damaging Het
Fer1l6 C T 15: 58,581,903 Q687* probably null Het
Fkrp T C 7: 16,810,710 E409G possibly damaging Het
Fzd9 T C 5: 135,249,606 D475G probably benign Het
Gabbr1 C T 17: 37,070,066 T767I possibly damaging Het
Gdf2 G A 14: 33,941,494 probably null Het
Gpatch1 T C 7: 35,309,351 N82D probably benign Het
Heg1 T A 16: 33,763,591 L1256Q probably damaging Het
Ireb2 T A 9: 54,896,601 probably null Het
Kansl1 T G 11: 104,356,814 H570P probably benign Het
Kcna10 T G 3: 107,194,428 M125R probably damaging Het
Lrp1b T G 2: 40,851,793 I3041L possibly damaging Het
Mbtd1 T C 11: 93,924,648 F354S possibly damaging Het
Mov10 T C 3: 104,802,578 T331A probably benign Het
Ms4a8a A T 19: 11,068,416 S243T probably damaging Het
Ndufa11 T C 17: 56,717,867 S10P probably benign Het
Olfml3 A G 3: 103,736,421 Y215H possibly damaging Het
Olfr315 T A 11: 58,778,879 F251I possibly damaging Het
Olfr663 A G 7: 104,704,322 I252V possibly damaging Het
Pclo T C 5: 14,713,560 S4016P probably benign Het
Pcyox1 G C 6: 86,391,744 A264G probably damaging Het
Pdzrn3 C T 6: 101,153,311 D515N probably damaging Het
Pnisr A G 4: 21,874,587 probably benign Het
Prc1 T C 7: 80,313,179 S574P probably damaging Het
Rfx1 T C 8: 84,074,058 V96A probably damaging Het
Rufy4 T C 1: 74,147,663 C537R probably damaging Het
Sfmbt1 T C 14: 30,815,254 probably null Het
Siglecf T C 7: 43,351,940 Y111H probably damaging Het
Snx14 G A 9: 88,398,294 T536I possibly damaging Het
Spindoc A G 19: 7,374,147 V204A probably benign Het
Sptbn5 A G 2: 120,085,331 probably benign Het
Swt1 G A 1: 151,402,976 Q227* probably null Het
Tg A G 15: 66,759,567 I562V possibly damaging Het
Trip11 T A 12: 101,884,920 I677F probably damaging Het
Vmn1r49 G A 6: 90,072,771 T83I probably benign Het
Vmn1r90 T C 7: 14,561,676 K166E possibly damaging Het
Vmn2r124 T C 17: 18,049,557 I25T possibly damaging Het
Vps13d A T 4: 145,181,207 probably null Het
Zfp106 T C 2: 120,523,968 I170V probably benign Het
Other mutations in Ranbp3l
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01746:Ranbp3l APN 15 9063087 nonsense probably null
IGL01982:Ranbp3l APN 15 9058746 missense probably damaging 0.99
IGL02549:Ranbp3l APN 15 8968441 missense possibly damaging 0.66
IGL03170:Ranbp3l APN 15 9000787 missense probably damaging 1.00
IGL03338:Ranbp3l APN 15 9060859 missense probably damaging 1.00
PIT4791001:Ranbp3l UTSW 15 9060748 missense probably damaging 1.00
R0137:Ranbp3l UTSW 15 9062987 missense probably damaging 1.00
R0383:Ranbp3l UTSW 15 9063104 missense possibly damaging 0.48
R0699:Ranbp3l UTSW 15 9058769 critical splice donor site probably null
R1517:Ranbp3l UTSW 15 9065001 nonsense probably null
R1629:Ranbp3l UTSW 15 9064988 missense probably damaging 0.99
R1922:Ranbp3l UTSW 15 9057125 missense probably damaging 1.00
R2058:Ranbp3l UTSW 15 9000817 missense probably damaging 1.00
R2265:Ranbp3l UTSW 15 9057113 missense probably damaging 0.99
R2512:Ranbp3l UTSW 15 8968465 missense probably benign 0.00
R4077:Ranbp3l UTSW 15 9060757 missense probably damaging 1.00
R4079:Ranbp3l UTSW 15 9060757 missense probably damaging 1.00
R4179:Ranbp3l UTSW 15 9057198 missense possibly damaging 0.62
R5265:Ranbp3l UTSW 15 9007203 missense probably benign 0.01
R5722:Ranbp3l UTSW 15 9000832 missense probably damaging 0.98
R5751:Ranbp3l UTSW 15 9063089 missense probably damaging 1.00
R5976:Ranbp3l UTSW 15 9002093 missense possibly damaging 0.85
R6504:Ranbp3l UTSW 15 8968462 missense probably benign 0.27
R6850:Ranbp3l UTSW 15 9058727 missense probably damaging 1.00
R6940:Ranbp3l UTSW 15 9011919 missense probably benign 0.03
R7009:Ranbp3l UTSW 15 9062984 missense probably damaging 1.00
R7018:Ranbp3l UTSW 15 9007285 missense probably benign 0.00
R7019:Ranbp3l UTSW 15 9057160 missense probably damaging 0.99
R7250:Ranbp3l UTSW 15 9011980 missense probably benign
R7352:Ranbp3l UTSW 15 8968358 start gained probably benign
R7483:Ranbp3l UTSW 15 9002132 missense possibly damaging 0.86
Predicted Primers PCR Primer
(F):5'- ACTGCACTGACTTTGGTCTCTG -3'
(R):5'- ACTCATGAGTTCCCACTGCC -3'

Sequencing Primer
(F):5'- GCACTGACTTTGGTCTCTGAAAATTC -3'
(R):5'- CAACTACGAAATCTGGTCCGGG -3'
Posted On2016-07-22