Incidental Mutation 'R5283:Vmn2r98'
ID 402896
Institutional Source Beutler Lab
Gene Symbol Vmn2r98
Ensembl Gene ENSMUSG00000096717
Gene Name vomeronasal 2, receptor 98
Synonyms EG224552
MMRRC Submission 042868-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.096) question?
Stock # R5283 (G1)
Quality Score 225
Status Not validated
Chromosome 17
Chromosomal Location 19273755-19301573 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 19300981 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Methionine to Threonine at position 661 (M661T)
Ref Sequence ENSEMBL: ENSMUSP00000131261 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000170424]
AlphaFold E9PZ56
Predicted Effect probably benign
Transcript: ENSMUST00000170424
AA Change: M661T

PolyPhen 2 Score 0.050 (Sensitivity: 0.94; Specificity: 0.83)
SMART Domains Protein: ENSMUSP00000131261
Gene: ENSMUSG00000096717
AA Change: M661T

DomainStartEndE-ValueType
signal peptide 1 19 N/A INTRINSIC
Pfam:ANF_receptor 82 460 2.6e-35 PFAM
Pfam:NCD3G 509 562 7.4e-22 PFAM
Pfam:7tm_3 594 830 1.4e-52 PFAM
low complexity region 844 856 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.4%
  • 3x: 98.9%
  • 10x: 97.9%
  • 20x: 96.7%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 57 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aamp C T 1: 74,323,165 (GRCm39) E53K possibly damaging Het
Amotl1 T C 9: 14,469,780 (GRCm39) E651G probably damaging Het
Ankrd11 A C 8: 123,610,921 (GRCm39) V2655G probably damaging Het
Apbb1ip G A 2: 22,757,683 (GRCm39) V434M probably benign Het
Atp5pd T C 11: 115,306,611 (GRCm39) Y150C probably damaging Het
Ccdc13 T A 9: 121,637,254 (GRCm39) D75V probably damaging Het
Col4a4 C T 1: 82,471,312 (GRCm39) G681E unknown Het
Crh T C 3: 19,748,171 (GRCm39) H157R probably damaging Het
Cstdc6 T C 16: 36,142,205 (GRCm39) D57G probably damaging Het
Dpp4 G A 2: 62,190,680 (GRCm39) T392I probably damaging Het
Ehd3 G T 17: 74,127,498 (GRCm39) A144S probably benign Het
Fnip2 A T 3: 79,373,015 (GRCm39) I1021N probably damaging Het
Fus T A 7: 127,584,719 (GRCm39) probably benign Het
Glo1 T C 17: 30,819,047 (GRCm39) T92A probably benign Het
Gm11595 G A 11: 99,663,381 (GRCm39) R100C unknown Het
Gm15130 A C 2: 110,965,754 (GRCm39) M165R unknown Het
Gon4l T C 3: 88,794,897 (GRCm39) L700P probably damaging Het
Grm1 C A 10: 10,608,936 (GRCm39) D566Y possibly damaging Het
Guca1b T C 17: 47,702,195 (GRCm39) probably benign Het
Has3 A G 8: 107,600,747 (GRCm39) M70V probably damaging Het
Hydin G T 8: 111,178,612 (GRCm39) C1069F possibly damaging Het
Ints1 A C 5: 139,750,137 (GRCm39) L920R probably damaging Het
Kdm2a T C 19: 4,381,297 (GRCm39) I54V probably benign Het
Kpna2 G A 11: 106,881,658 (GRCm39) T324I probably damaging Het
Lrr1 T C 12: 69,221,428 (GRCm39) L190S probably damaging Het
Lrrc49 A T 9: 60,594,461 (GRCm39) H16Q probably benign Het
Mab21l4 C T 1: 93,087,575 (GRCm39) D93N probably benign Het
Mapkap1 A G 2: 34,334,360 (GRCm39) E147G probably damaging Het
Mrpl2 C T 17: 46,959,992 (GRCm39) R219W possibly damaging Het
Muc21 A G 17: 35,932,224 (GRCm39) probably benign Het
Ndc80 A G 17: 71,828,130 (GRCm39) S66P probably benign Het
Notch1 A G 2: 26,358,638 (GRCm39) Y1398H probably damaging Het
Olfml2b C T 1: 170,508,758 (GRCm39) R539* probably null Het
Or6b9 T A 7: 106,555,955 (GRCm39) T63S probably benign Het
Pde7a T C 3: 19,314,420 (GRCm39) T59A probably damaging Het
Plekhg1 G A 10: 3,906,654 (GRCm39) V524I probably benign Het
Plin4 T A 17: 56,413,777 (GRCm39) M283L probably benign Het
Prp2 C T 6: 132,577,606 (GRCm39) P298S unknown Het
Rap1gap2 G A 11: 74,286,651 (GRCm39) R550C probably damaging Het
Reln G A 5: 22,216,161 (GRCm39) T1008I probably damaging Het
Rffl T C 11: 82,703,615 (GRCm39) K103E probably damaging Het
Rmnd5b A T 11: 51,517,887 (GRCm39) F156I probably damaging Het
Rtn4ip1 T C 10: 43,778,461 (GRCm39) I68T probably damaging Het
Samhd1 T C 2: 156,951,412 (GRCm39) I442V possibly damaging Het
Slc12a4 A T 8: 106,677,326 (GRCm39) probably null Het
Slc35b1 G T 11: 95,275,814 (GRCm39) probably benign Het
Ssh1 A G 5: 114,088,606 (GRCm39) V354A probably damaging Het
Stk33 T C 7: 108,935,334 (GRCm39) K153E possibly damaging Het
Stk4 C T 2: 163,952,199 (GRCm39) R19* probably null Het
Tas2r136 A T 6: 132,754,374 (GRCm39) I251N probably damaging Het
Tbr1 A T 2: 61,635,244 (GRCm39) T65S probably benign Het
Tkt C T 14: 30,282,575 (GRCm39) S124F probably damaging Het
Tll1 T C 8: 64,555,000 (GRCm39) I228V possibly damaging Het
Tmem236 A G 2: 14,179,644 (GRCm39) I82V probably benign Het
Vmn2r110 T C 17: 20,800,899 (GRCm39) Q511R probably benign Het
Vps13a T A 19: 16,655,334 (GRCm39) K1898I probably damaging Het
Zc3h12a T C 4: 125,020,558 (GRCm39) E95G probably benign Het
Other mutations in Vmn2r98
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00897:Vmn2r98 APN 17 19,286,007 (GRCm39) splice site probably benign
IGL01296:Vmn2r98 APN 17 19,285,447 (GRCm39) missense probably damaging 1.00
IGL01363:Vmn2r98 APN 17 19,286,020 (GRCm39) missense probably benign 0.01
IGL01618:Vmn2r98 APN 17 19,285,521 (GRCm39) missense possibly damaging 0.93
IGL01746:Vmn2r98 APN 17 19,286,713 (GRCm39) missense probably damaging 1.00
IGL01747:Vmn2r98 APN 17 19,286,702 (GRCm39) missense probably damaging 1.00
IGL01770:Vmn2r98 APN 17 19,286,702 (GRCm39) missense probably damaging 1.00
IGL01868:Vmn2r98 APN 17 19,286,548 (GRCm39) missense probably benign
IGL02123:Vmn2r98 APN 17 19,300,941 (GRCm39) missense probably damaging 1.00
IGL02323:Vmn2r98 APN 17 19,286,113 (GRCm39) missense probably damaging 0.99
IGL02543:Vmn2r98 APN 17 19,286,083 (GRCm39) missense probably benign
IGL02650:Vmn2r98 APN 17 19,301,223 (GRCm39) missense probably benign 0.00
IGL02676:Vmn2r98 APN 17 19,285,521 (GRCm39) missense probably benign 0.00
IGL02803:Vmn2r98 APN 17 19,286,275 (GRCm39) missense probably benign
IGL02807:Vmn2r98 APN 17 19,301,283 (GRCm39) missense probably damaging 1.00
IGL03307:Vmn2r98 APN 17 19,286,242 (GRCm39) missense possibly damaging 0.62
IGL03396:Vmn2r98 APN 17 19,290,107 (GRCm39) missense possibly damaging 0.92
PIT4131001:Vmn2r98 UTSW 17 19,301,223 (GRCm39) missense probably benign 0.00
R0122:Vmn2r98 UTSW 17 19,286,662 (GRCm39) missense probably benign 0.06
R0329:Vmn2r98 UTSW 17 19,286,609 (GRCm39) missense probably benign 0.21
R0330:Vmn2r98 UTSW 17 19,286,609 (GRCm39) missense probably benign 0.21
R0368:Vmn2r98 UTSW 17 19,286,089 (GRCm39) nonsense probably null
R0545:Vmn2r98 UTSW 17 19,273,875 (GRCm39) missense probably benign 0.15
R0635:Vmn2r98 UTSW 17 19,300,759 (GRCm39) missense probably benign 0.00
R0689:Vmn2r98 UTSW 17 19,300,782 (GRCm39) missense possibly damaging 0.83
R1035:Vmn2r98 UTSW 17 19,301,011 (GRCm39) missense possibly damaging 0.90
R1243:Vmn2r98 UTSW 17 19,286,210 (GRCm39) missense possibly damaging 0.52
R1421:Vmn2r98 UTSW 17 19,285,440 (GRCm39) missense probably damaging 1.00
R1629:Vmn2r98 UTSW 17 19,287,645 (GRCm39) missense possibly damaging 0.94
R1643:Vmn2r98 UTSW 17 19,301,170 (GRCm39) missense probably damaging 1.00
R1795:Vmn2r98 UTSW 17 19,286,702 (GRCm39) missense probably damaging 1.00
R1958:Vmn2r98 UTSW 17 19,286,680 (GRCm39) missense possibly damaging 0.70
R1962:Vmn2r98 UTSW 17 19,285,595 (GRCm39) nonsense probably null
R2165:Vmn2r98 UTSW 17 19,301,553 (GRCm39) missense unknown
R2238:Vmn2r98 UTSW 17 19,286,213 (GRCm39) missense probably damaging 1.00
R2252:Vmn2r98 UTSW 17 19,300,698 (GRCm39) missense probably benign 0.00
R2323:Vmn2r98 UTSW 17 19,286,081 (GRCm39) missense probably benign 0.18
R2887:Vmn2r98 UTSW 17 19,301,439 (GRCm39) missense possibly damaging 0.83
R2909:Vmn2r98 UTSW 17 19,287,664 (GRCm39) missense probably damaging 1.00
R3001:Vmn2r98 UTSW 17 19,286,125 (GRCm39) missense probably benign 0.01
R3002:Vmn2r98 UTSW 17 19,286,125 (GRCm39) missense probably benign 0.01
R3003:Vmn2r98 UTSW 17 19,286,125 (GRCm39) missense probably benign 0.01
R3788:Vmn2r98 UTSW 17 19,300,887 (GRCm39) missense probably benign 0.31
R4570:Vmn2r98 UTSW 17 19,286,354 (GRCm39) missense probably benign 0.11
R4706:Vmn2r98 UTSW 17 19,290,007 (GRCm39) missense probably damaging 1.00
R4723:Vmn2r98 UTSW 17 19,286,602 (GRCm39) missense probably benign 0.01
R5036:Vmn2r98 UTSW 17 19,286,419 (GRCm39) missense probably benign 0.00
R5072:Vmn2r98 UTSW 17 19,286,306 (GRCm39) missense probably benign 0.07
R5121:Vmn2r98 UTSW 17 19,273,815 (GRCm39) missense probably benign 0.13
R5294:Vmn2r98 UTSW 17 19,290,016 (GRCm39) nonsense probably null
R5371:Vmn2r98 UTSW 17 19,290,015 (GRCm39) missense probably damaging 1.00
R5532:Vmn2r98 UTSW 17 19,287,645 (GRCm39) missense possibly damaging 0.94
R5598:Vmn2r98 UTSW 17 19,301,161 (GRCm39) missense probably benign 0.37
R5800:Vmn2r98 UTSW 17 19,286,260 (GRCm39) missense probably benign 0.17
R6089:Vmn2r98 UTSW 17 19,286,336 (GRCm39) missense probably benign 0.29
R6155:Vmn2r98 UTSW 17 19,286,143 (GRCm39) missense possibly damaging 0.87
R6853:Vmn2r98 UTSW 17 19,286,063 (GRCm39) missense probably benign 0.00
R6920:Vmn2r98 UTSW 17 19,285,510 (GRCm39) missense probably damaging 0.98
R7012:Vmn2r98 UTSW 17 19,286,530 (GRCm39) missense probably benign 0.06
R7042:Vmn2r98 UTSW 17 19,301,184 (GRCm39) missense probably benign
R7068:Vmn2r98 UTSW 17 19,285,575 (GRCm39) missense probably benign
R7607:Vmn2r98 UTSW 17 19,287,570 (GRCm39) missense possibly damaging 0.95
R7763:Vmn2r98 UTSW 17 19,300,797 (GRCm39) missense probably benign 0.00
R7771:Vmn2r98 UTSW 17 19,287,460 (GRCm39) splice site probably null
R7915:Vmn2r98 UTSW 17 19,287,493 (GRCm39) missense probably benign 0.10
R8028:Vmn2r98 UTSW 17 19,273,912 (GRCm39) missense probably benign 0.00
R8205:Vmn2r98 UTSW 17 19,301,425 (GRCm39) missense probably damaging 0.99
R8241:Vmn2r98 UTSW 17 19,301,031 (GRCm39) missense probably damaging 0.99
R8906:Vmn2r98 UTSW 17 19,286,532 (GRCm39) missense probably benign
R8952:Vmn2r98 UTSW 17 19,285,531 (GRCm39) missense possibly damaging 0.76
R9147:Vmn2r98 UTSW 17 19,286,383 (GRCm39) missense probably benign 0.04
R9148:Vmn2r98 UTSW 17 19,286,383 (GRCm39) missense probably benign 0.04
R9187:Vmn2r98 UTSW 17 19,301,481 (GRCm39) missense probably damaging 1.00
R9344:Vmn2r98 UTSW 17 19,286,777 (GRCm39) missense probably benign 0.14
R9467:Vmn2r98 UTSW 17 19,287,517 (GRCm39) missense probably benign 0.01
R9487:Vmn2r98 UTSW 17 19,301,496 (GRCm39) missense possibly damaging 0.78
R9753:Vmn2r98 UTSW 17 19,285,665 (GRCm39) missense probably benign 0.27
Z1177:Vmn2r98 UTSW 17 19,287,685 (GRCm39) nonsense probably null
Z1177:Vmn2r98 UTSW 17 19,285,398 (GRCm39) critical splice acceptor site probably null
Predicted Primers PCR Primer
(F):5'- GGCATCTTTGTGAAGCACAGAG -3'
(R):5'- TGCACAAAATGAGGATGTGTCC -3'

Sequencing Primer
(F):5'- TGTGAAGCACAGAGACACTCCTATTG -3'
(R):5'- GTCCATATTCAGTATGAGCATCTTGG -3'
Posted On 2016-07-22