Mutagenetix > Incidental Mutations

Incidental Mutation 'R5215:Atic'

403385

Institutional Source

Beutler Lab

Gene Symbol

Atic

Ensembl Gene

ENSMUSG00000026192

Gene Name

5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase

Synonyms

2610509C24Rik

MMRRC Submission

042788-MU

Accession Numbers

Genbank: NM_026195; MGI: 1351352

Is this an essential gene?

Probably essential (E-score: 0.967) question?

Stock #

R5215 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

71557150-71579631 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 71564507 bp

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 161 (S161P)

Ref Sequence

ENSEMBL: ENSMUSP00000027384 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027384]

Predicted Effect

probably damaging
Transcript: ENSMUST00000027384
AA Change: S161P

PolyPhen 2 Score 0.979 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000027384
Gene: ENSMUSG00000026192
AA Change: S161P

Domain	Start	End	E-Value	Type
MGS	16	130	1.31e-46	SMART
AICARFT_IMPCHas	135	462	4.84e-132	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136443

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148077

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154855

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000155769

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000187982

Meta Mutation Damage Score

0.3846

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.5%
20x: 95.8%

Validation Efficiency

100% (79/79)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a bifunctional protein that catalyzes the last two steps of the de novo purine biosynthetic pathway. The N-terminal domain has phosphoribosylaminoimidazolecarboxamide formyltransferase activity, and the C-terminal domain has IMP cyclohydrolase activity. A mutation in this gene results in AICA-ribosiduria. [provided by RefSeq, Sep 2009]

Allele List at MGI

All alleles(2) : Gene trapped(2)

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Alas1	C	A	9: 106,243,375	A73S	probably benign	Het
Aldoart2	G	A	12: 55,565,419	R43Q	probably benign	Het
Ano4	T	C	10: 89,317,303	H49R	possibly damaging	Het
Atp6v1c2	T	C	12: 17,291,658	E244G	probably benign	Het
Cd164l2	C	A	4: 133,221,478	L42I	unknown	Het
Cdc42ep2	T	C	19: 5,918,210	R156G	probably benign	Het
Cdc45	C	T	16: 18,795,897	R205H	probably damaging	Het
Cdk5	T	A	5: 24,419,461	N265I	probably benign	Het
Cfap69	G	T	5: 5,589,133	N262K	possibly damaging	Het
Chd6	C	T	2: 160,949,953	V2495M	probably damaging	Het
Cps1	T	A	1: 67,166,380	F521I	possibly damaging	Het
Crb2	A	G	2: 37,793,753	E1089G	probably benign	Het
Decr1	T	C	4: 15,929,795	D166G	probably damaging	Het
Dhodh	G	A	8: 109,606,343		probably benign	Het
Dnaaf5	G	A	5: 139,161,877	V399I	probably benign	Het
Dnah11	T	C	12: 118,157,361	T526A	probably benign	Het
Drosha	T	C	15: 12,885,133		probably benign	Het
Elfn2	T	A	15: 78,674,201	I49F	probably damaging	Het
Gabra1	T	C	11: 42,154,828	T152A	probably damaging	Het
Gigyf2	C	A	1: 87,365,266	T85K	probably damaging	Het
Gimap8	A	T	6: 48,651,083	Y258F	possibly damaging	Het
Glmn	A	G	5: 107,561,886	C351R	probably benign	Het
Gm10032	T	C	14: 66,792,549		noncoding transcript	Het
Gm340	T	C	19: 41,585,932	I1042T	probably damaging	Het
Gorasp2	G	A	2: 70,689,254	A328T	probably benign	Het
Grin1	A	T	2: 25,303,907	H392Q	probably benign	Het
Gzmn	A	G	14: 56,167,862	V55A	probably damaging	Het
Herc4	T	A	10: 63,289,097	S497T	probably benign	Het
Hrc	A	T	7: 45,336,091	D222V	probably damaging	Het
Iars2	T	C	1: 185,294,769	H761R	probably damaging	Het
Jmjd1c	T	A	10: 67,240,701	D2101E	possibly damaging	Het
Kcng1	C	T	2: 168,263,133	M264I	probably benign	Het
Klra14-ps	C	A	6: 130,157,683		noncoding transcript	Het
Krtap5-3	T	A	7: 142,202,237	C270*	probably null	Het
Lama3	A	G	18: 12,577,900	H3164R	probably damaging	Het
Mdn1	T	C	4: 32,741,418	M3840T	possibly damaging	Het
Mtor	A	T	4: 148,453,983	H166L	probably benign	Het
Mx1	T	C	16: 97,448,360	N556D	possibly damaging	Het
Oca2	A	T	7: 56,295,498	R285*	probably null	Het
Olfr103	T	A	17: 37,336,813	I140F	probably benign	Het
Olfr1285	T	C	2: 111,409,286		noncoding transcript	Het
Olfr521	A	G	7: 99,767,510	E116G	probably damaging	Het
Olfr681	G	A	7: 105,126,564	H246Y	probably damaging	Het
Olfr952	A	T	9: 39,426,623	Y149*	probably null	Het
Pan3	A	G	5: 147,455,105		probably null	Het
Pard3	G	A	8: 127,378,264	V496M	probably damaging	Het
Pdcd2l	A	T	7: 34,192,889	V185D	possibly damaging	Het
Pgghg	T	C	7: 140,946,564	V623A	possibly damaging	Het
Pigu	C	A	2: 155,335,329		probably benign	Het
Pkmyt1	G	A	17: 23,732,592	R40Q	probably benign	Het
Prag1	G	A	8: 36,099,889	A65T	probably benign	Het
Prkdc	C	A	16: 15,772,121	T2616N	possibly damaging	Het
Prpf8	G	A	11: 75,500,204	E1360K	probably benign	Het
Ptprt	C	T	2: 162,278,164	V128M	probably damaging	Het
Rp1l1	C	T	14: 64,030,013	S1016L	probably benign	Het
Rprd1a	G	T	18: 24,488,200	D307E	probably damaging	Het
Slc11a1	A	T	1: 74,383,777		probably benign	Het
Slc22a16	T	A	10: 40,581,390	M209K	probably damaging	Het
Slf2	T	G	19: 44,948,037	L707R	probably damaging	Het
Son	T	A	16: 91,656,675	M770K	probably damaging	Het
Taf6l	T	C	19: 8,778,053		probably benign	Het
Tbc1d2	C	A	4: 46,614,006	V692L	probably benign	Het
Tnpo3	C	T	6: 29,582,153		probably benign	Het
Txndc16	A	T	14: 45,211,140		probably benign	Het
Ubr1	T	C	2: 120,904,044	K1125R	probably benign	Het
Vmn2r9	A	G	5: 108,846,485	S433P	probably benign	Het
Zc3h12a	A	G	4: 125,126,913	S46P	probably benign	Het
Zwilch	T	G	9: 64,146,874	I490L	probably benign	Het

Other mutations in Atic

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01947:Atic	APN	1	71570837	splice site	probably benign
IGL02368:Atic	APN	1	71564565	splice site	probably benign
IGL03291:Atic	APN	1	71570922	missense	probably benign	0.06
3-1:Atic	UTSW	1	71560895	nonsense	probably null
R0039:Atic	UTSW	1	71577850	missense	possibly damaging	0.95
R0039:Atic	UTSW	1	71577850	missense	possibly damaging	0.95
R0558:Atic	UTSW	1	71563788	missense	probably benign	0.00
R1222:Atic	UTSW	1	71559279	missense	probably damaging	1.00
R1662:Atic	UTSW	1	71576127	missense	probably benign	0.06
R2075:Atic	UTSW	1	71576127	missense	probably benign	0.06
R2402:Atic	UTSW	1	71569057	nonsense	probably null
R2475:Atic	UTSW	1	71559269	missense	probably damaging	1.00
R2566:Atic	UTSW	1	71568971	missense	probably damaging	0.98
R3711:Atic	UTSW	1	71578579	missense	probably benign	0.02
R5115:Atic	UTSW	1	71557275	critical splice donor site	probably null
R5444:Atic	UTSW	1	71576717	missense	probably damaging	0.96
R6348:Atic	UTSW	1	71576698	missense	probably damaging	1.00
R6370:Atic	UTSW	1	71578660	missense	probably damaging	1.00
R6374:Atic	UTSW	1	71564941	missense	probably damaging	1.00
R6909:Atic	UTSW	1	71576846	splice site	probably null
R7224:Atic	UTSW	1	71570855	missense	probably benign
R7444:Atic	UTSW	1	71563787	missense	probably benign	0.05
R7724:Atic	UTSW	1	71564901	missense	probably damaging	1.00
R8171:Atic	UTSW	1	71569873	missense	possibly damaging	0.84

Predicted Primers

PCR Primer
(F):5'- CAAGGGGAATTCCGATGAGC -3'
(R):5'- TTTAGGTACAGCCTCAGCCG -3'

Sequencing Primer
(F):5'- AAGGGGAATTCCGATGAGCTATTTTC -3'
(R):5'- CTCTGTGTTCAATGAAAGGACAG -3'

Posted On

2016-07-22