Incidental Mutation 'R0009:Pde5a'
| ID |
40459 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Pde5a
|
| Ensembl Gene |
ENSMUSG00000053965 |
| Gene Name |
phosphodiesterase 5A, cGMP-specific |
| Synonyms |
PDE5A1, Pde5 |
| MMRRC Submission |
038304-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.447)
|
| Stock # |
R0009 (G1)
|
| Quality Score |
128 |
|
Status
|
Validated
|
| Chromosome |
3 |
| Chromosomal Location |
122728947-122859374 bp(+) (GRCm38) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
C to T
at 122824902 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000143042
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000066728]
[ENSMUST00000200389]
|
| AlphaFold |
Q8CG03 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000066728
|
| SMART Domains |
Protein: ENSMUSP00000069011
Gene: ENSMUSG00000053965
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:GAF
|
64 |
152 |
4e-42 |
BLAST |
|
GAF
|
154 |
314 |
2.23e-31 |
SMART |
|
GAF
|
336 |
503 |
9.8e-28 |
SMART |
|
HDc
|
600 |
768 |
8.11e-9 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000200389
|
| SMART Domains |
Protein: ENSMUSP00000143042
Gene: ENSMUSG00000053965
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:GAF
|
32 |
120 |
3e-42 |
BLAST |
|
GAF
|
122 |
282 |
1.1e-33 |
SMART |
|
GAF
|
304 |
471 |
4.7e-30 |
SMART |
|
HDc
|
568 |
736 |
4.4e-11 |
SMART |
|
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 96.7%
- 20x: 93.7%
|
| Validation Efficiency |
100% (68/68) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a cGMP-binding, cGMP-specific phosphodiesterase, a member of the cyclic nucleotide phosphodiesterase family. This phosphodiesterase specifically hydrolyzes cGMP to 5'-GMP. It is involved in the regulation of intracellular concentrations of cyclic nucleotides and is important for smooth muscle relaxation in the cardiovascular system. Alternative splicing of this gene results in three transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 66 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| A1bg |
T |
G |
15: 60,919,633 (GRCm38) |
|
probably benign |
Het |
| Abcg4 |
T |
G |
9: 44,277,649 (GRCm38) |
|
probably benign |
Het |
| Afm |
C |
A |
5: 90,545,384 (GRCm38) |
|
probably benign |
Het |
| Ahrr |
G |
A |
13: 74,283,024 (GRCm38) |
|
probably benign |
Het |
| Aplnr |
T |
A |
2: 85,137,276 (GRCm38) |
|
probably null |
Het |
| Arih2 |
T |
A |
9: 108,611,727 (GRCm38) |
H264L |
probably damaging |
Het |
| Atp1a1 |
A |
T |
3: 101,579,835 (GRCm38) |
I886N |
possibly damaging |
Het |
| Bmf |
A |
T |
2: 118,549,622 (GRCm38) |
V14E |
probably damaging |
Het |
| Ccdc116 |
T |
C |
16: 17,144,039 (GRCm38) |
E15G |
probably damaging |
Het |
| Ccdc175 |
T |
C |
12: 72,135,965 (GRCm38) |
N427D |
possibly damaging |
Het |
| Cfap53 |
A |
G |
18: 74,299,176 (GRCm38) |
H45R |
probably benign |
Het |
| Chd3 |
A |
G |
11: 69,349,906 (GRCm38) |
L1569P |
probably damaging |
Het |
| Cntn2 |
G |
A |
1: 132,516,180 (GRCm38) |
Q457* |
probably null |
Het |
| Coro1a |
A |
T |
7: 126,701,413 (GRCm38) |
|
probably benign |
Het |
| Cracr2b |
T |
A |
7: 141,463,759 (GRCm38) |
L91Q |
probably damaging |
Het |
| Ctdspl |
T |
C |
9: 119,020,046 (GRCm38) |
|
probably null |
Het |
| Dip2b |
T |
A |
15: 100,169,312 (GRCm38) |
L565Q |
probably damaging |
Het |
| Dip2c |
T |
A |
13: 9,621,903 (GRCm38) |
C1004S |
probably damaging |
Het |
| Dnah11 |
A |
T |
12: 118,045,522 (GRCm38) |
I2135N |
possibly damaging |
Het |
| Dnah14 |
A |
G |
1: 181,769,407 (GRCm38) |
|
probably benign |
Het |
| Dnase1 |
T |
C |
16: 4,038,946 (GRCm38) |
V147A |
probably damaging |
Het |
| Dusp8 |
T |
C |
7: 142,082,054 (GRCm38) |
|
probably benign |
Het |
| Fer1l6 |
T |
C |
15: 58,662,787 (GRCm38) |
Y1828H |
probably damaging |
Het |
| Flvcr1 |
A |
G |
1: 191,008,191 (GRCm38) |
V544A |
probably benign |
Het |
| Fsd1l |
T |
C |
4: 53,687,209 (GRCm38) |
V311A |
probably benign |
Het |
| Glud1 |
G |
A |
14: 34,334,268 (GRCm38) |
G300S |
probably benign |
Het |
| Gm4847 |
C |
T |
1: 166,630,486 (GRCm38) |
V433I |
probably benign |
Het |
| Gstm3 |
T |
G |
3: 107,967,840 (GRCm38) |
Y62S |
probably damaging |
Het |
| Gtse1 |
C |
T |
15: 85,862,435 (GRCm38) |
P151S |
probably benign |
Het |
| Herc2 |
T |
C |
7: 56,207,812 (GRCm38) |
S4048P |
probably benign |
Het |
| Hp1bp3 |
T |
A |
4: 138,221,683 (GRCm38) |
I19K |
probably benign |
Het |
| Htr7 |
C |
A |
19: 36,041,540 (GRCm38) |
|
probably benign |
Het |
| Il1a |
C |
T |
2: 129,309,074 (GRCm38) |
D10N |
probably damaging |
Het |
| Il22ra2 |
A |
T |
10: 19,624,458 (GRCm38) |
N39I |
probably damaging |
Het |
| Kcnn4 |
T |
C |
7: 24,379,255 (GRCm38) |
C267R |
possibly damaging |
Het |
| Larp1 |
A |
G |
11: 58,055,473 (GRCm38) |
K879R |
possibly damaging |
Het |
| Lcn5 |
T |
A |
2: 25,661,405 (GRCm38) |
|
probably benign |
Het |
| Lep |
T |
A |
6: 29,068,972 (GRCm38) |
C7* |
probably null |
Het |
| Magi2 |
A |
T |
5: 20,611,055 (GRCm38) |
Y747F |
probably benign |
Het |
| Mast4 |
T |
C |
13: 102,742,058 (GRCm38) |
T1223A |
probably damaging |
Het |
| Mcc |
C |
T |
18: 44,445,933 (GRCm38) |
E803K |
probably damaging |
Het |
| Mtmr4 |
T |
C |
11: 87,611,508 (GRCm38) |
I796T |
probably benign |
Het |
| Myef2 |
A |
T |
2: 125,108,978 (GRCm38) |
D312E |
probably benign |
Het |
| Myl3 |
A |
C |
9: 110,767,929 (GRCm38) |
D119A |
probably damaging |
Het |
| Myo19 |
T |
A |
11: 84,888,169 (GRCm38) |
|
probably null |
Het |
| Naa15 |
T |
G |
3: 51,470,219 (GRCm38) |
H763Q |
probably damaging |
Het |
| Plpp2 |
C |
T |
10: 79,527,244 (GRCm38) |
R184H |
probably benign |
Het |
| Rab19 |
T |
G |
6: 39,389,687 (GRCm38) |
L179V |
probably damaging |
Het |
| Rims2 |
T |
A |
15: 39,534,966 (GRCm38) |
M1087K |
probably damaging |
Het |
| Riox2 |
C |
A |
16: 59,489,367 (GRCm38) |
D361E |
probably benign |
Het |
| Sh3rf1 |
T |
A |
8: 61,226,293 (GRCm38) |
V123E |
probably damaging |
Het |
| Slc35e1 |
A |
T |
8: 72,484,709 (GRCm38) |
N318K |
probably damaging |
Het |
| Slc9a2 |
A |
T |
1: 40,763,602 (GRCm38) |
E604V |
probably benign |
Het |
| Srp72 |
T |
C |
5: 76,987,885 (GRCm38) |
S221P |
probably damaging |
Het |
| Tbx19 |
A |
T |
1: 165,160,520 (GRCm38) |
S15T |
possibly damaging |
Het |
| Tcea2 |
A |
G |
2: 181,685,817 (GRCm38) |
T112A |
probably benign |
Het |
| Tesk1 |
T |
A |
4: 43,445,368 (GRCm38) |
D230E |
probably damaging |
Het |
| Tm4sf5 |
C |
T |
11: 70,510,712 (GRCm38) |
A179V |
probably damaging |
Het |
| Tnr |
G |
T |
1: 159,852,416 (GRCm38) |
G320V |
probably damaging |
Het |
| Trappc11 |
A |
T |
8: 47,503,320 (GRCm38) |
C874S |
possibly damaging |
Het |
| Trpm3 |
T |
A |
19: 22,914,446 (GRCm38) |
Y885N |
probably damaging |
Het |
| Unc5a |
T |
A |
13: 55,002,879 (GRCm38) |
C505S |
probably damaging |
Het |
| Vmn1r28 |
G |
A |
6: 58,265,717 (GRCm38) |
A182T |
probably benign |
Het |
| Xpo5 |
T |
C |
17: 46,204,786 (GRCm38) |
|
probably benign |
Het |
| Zfp637 |
C |
A |
6: 117,845,668 (GRCm38) |
H252Q |
probably damaging |
Het |
| Zfp646 |
T |
A |
7: 127,880,731 (GRCm38) |
D693E |
probably damaging |
Het |
|
| Other mutations in Pde5a |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00226:Pde5a
|
APN |
3 |
122,794,357 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL00945:Pde5a
|
APN |
3 |
122,835,642 (GRCm38) |
critical splice donor site |
probably null |
|
|
IGL01395:Pde5a
|
APN |
3 |
122,817,955 (GRCm38) |
missense |
probably benign |
0.40 |
|
IGL01872:Pde5a
|
APN |
3 |
122,794,369 (GRCm38) |
critical splice donor site |
probably null |
|
|
IGL01947:Pde5a
|
APN |
3 |
122,835,610 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02033:Pde5a
|
APN |
3 |
122,803,061 (GRCm38) |
missense |
possibly damaging |
0.51 |
|
IGL02209:Pde5a
|
APN |
3 |
122,825,015 (GRCm38) |
splice site |
probably benign |
|
|
IGL02220:Pde5a
|
APN |
3 |
122,748,382 (GRCm38) |
missense |
probably benign |
0.05 |
|
IGL02301:Pde5a
|
APN |
3 |
122,760,885 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02748:Pde5a
|
APN |
3 |
122,760,892 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R0031:Pde5a
|
UTSW |
3 |
122,803,055 (GRCm38) |
missense |
probably benign |
0.00 |
|
R0119:Pde5a
|
UTSW |
3 |
122,748,458 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0390:Pde5a
|
UTSW |
3 |
122,835,583 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0481:Pde5a
|
UTSW |
3 |
122,818,077 (GRCm38) |
splice site |
probably benign |
|
|
R0499:Pde5a
|
UTSW |
3 |
122,748,458 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0657:Pde5a
|
UTSW |
3 |
122,748,458 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0845:Pde5a
|
UTSW |
3 |
122,729,331 (GRCm38) |
missense |
probably benign |
0.28 |
|
R0908:Pde5a
|
UTSW |
3 |
122,779,001 (GRCm38) |
missense |
probably benign |
0.01 |
|
R1147:Pde5a
|
UTSW |
3 |
122,794,313 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1147:Pde5a
|
UTSW |
3 |
122,794,313 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1553:Pde5a
|
UTSW |
3 |
122,778,936 (GRCm38) |
missense |
probably benign |
0.14 |
|
R1728:Pde5a
|
UTSW |
3 |
122,748,240 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1744:Pde5a
|
UTSW |
3 |
122,747,897 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R1774:Pde5a
|
UTSW |
3 |
122,729,364 (GRCm38) |
missense |
probably benign |
0.01 |
|
R1784:Pde5a
|
UTSW |
3 |
122,748,240 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2437:Pde5a
|
UTSW |
3 |
122,843,053 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2844:Pde5a
|
UTSW |
3 |
122,851,708 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2897:Pde5a
|
UTSW |
3 |
122,779,002 (GRCm38) |
missense |
probably benign |
0.03 |
|
R2936:Pde5a
|
UTSW |
3 |
122,794,319 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R3160:Pde5a
|
UTSW |
3 |
122,781,628 (GRCm38) |
nonsense |
probably null |
|
|
R3162:Pde5a
|
UTSW |
3 |
122,781,628 (GRCm38) |
nonsense |
probably null |
|
|
R3704:Pde5a
|
UTSW |
3 |
122,779,019 (GRCm38) |
missense |
probably benign |
0.00 |
|
R3847:Pde5a
|
UTSW |
3 |
122,803,160 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R3932:Pde5a
|
UTSW |
3 |
122,760,896 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R4387:Pde5a
|
UTSW |
3 |
122,729,352 (GRCm38) |
missense |
probably benign |
0.00 |
|
R4613:Pde5a
|
UTSW |
3 |
122,823,093 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4676:Pde5a
|
UTSW |
3 |
122,747,893 (GRCm38) |
missense |
possibly damaging |
0.67 |
|
R5034:Pde5a
|
UTSW |
3 |
122,852,587 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5034:Pde5a
|
UTSW |
3 |
122,852,586 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5358:Pde5a
|
UTSW |
3 |
122,748,176 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5394:Pde5a
|
UTSW |
3 |
122,818,009 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5502:Pde5a
|
UTSW |
3 |
122,803,032 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5821:Pde5a
|
UTSW |
3 |
122,817,955 (GRCm38) |
missense |
probably benign |
0.40 |
|
R5932:Pde5a
|
UTSW |
3 |
122,841,044 (GRCm38) |
missense |
probably benign |
0.01 |
|
R6063:Pde5a
|
UTSW |
3 |
122,824,925 (GRCm38) |
missense |
probably benign |
0.23 |
|
R6190:Pde5a
|
UTSW |
3 |
122,729,307 (GRCm38) |
missense |
probably benign |
0.28 |
|
R6815:Pde5a
|
UTSW |
3 |
122,824,924 (GRCm38) |
missense |
probably benign |
0.01 |
|
R6940:Pde5a
|
UTSW |
3 |
122,779,032 (GRCm38) |
missense |
possibly damaging |
0.53 |
|
R7274:Pde5a
|
UTSW |
3 |
122,855,246 (GRCm38) |
nonsense |
probably null |
|
|
R7337:Pde5a
|
UTSW |
3 |
122,748,458 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7384:Pde5a
|
UTSW |
3 |
122,825,000 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7480:Pde5a
|
UTSW |
3 |
122,803,148 (GRCm38) |
missense |
possibly damaging |
0.50 |
|
R7508:Pde5a
|
UTSW |
3 |
122,818,030 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7522:Pde5a
|
UTSW |
3 |
122,840,999 (GRCm38) |
nonsense |
probably null |
|
|
R7623:Pde5a
|
UTSW |
3 |
122,774,601 (GRCm38) |
missense |
probably benign |
|
|
R8153:Pde5a
|
UTSW |
3 |
122,852,578 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8153:Pde5a
|
UTSW |
3 |
122,852,576 (GRCm38) |
missense |
probably benign |
0.30 |
|
R8351:Pde5a
|
UTSW |
3 |
122,748,479 (GRCm38) |
critical splice donor site |
probably null |
|
|
R8927:Pde5a
|
UTSW |
3 |
122,839,600 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8928:Pde5a
|
UTSW |
3 |
122,839,600 (GRCm38) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- CATGGCATTACTAACTGTGGGTGGG -3'
(R):5'- CAGCAATGCAGAGGAAGCATTTTCTTG -3'
Sequencing Primer
(F):5'- tctgtcctgtccctgtctg -3'
(R):5'- GTTTTCTTGGCAAAGCCGTC -3'
|
| Posted On |
2013-05-23 |
Incidental Mutation