Mutagenetix > Incidental Mutation

Incidental Mutation 'R0009:Afm'

40465

Institutional Source

Beutler Lab

Gene Symbol

Afm

Ensembl Gene

ENSMUSG00000029369

Gene Name

afamin

Synonyms

alpha albumin, Alf

MMRRC Submission

038304-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.058) question?

Stock #

R0009 (G1)

Quality Score

166

Status

Validated

Chromosome

Chromosomal Location

90518932-90553543 bp(+) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

C to A at 90545384 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000117180 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000113179] [ENSMUST00000128740]

AlphaFold

O89020

Predicted Effect

probably benign
Transcript: ENSMUST00000113179

SMART Domains

Protein: ENSMUSP00000108804
Gene: ENSMUSG00000029369

Domain	Start	End	E-Value	Type
ALBUMIN	20	205	3.69e-55	SMART
ALBUMIN	212	397	6.42e-64	SMART
ALBUMIN	404	593	3.07e-61	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000128740

SMART Domains

Protein: ENSMUSP00000117180
Gene: ENSMUSG00000029369

Domain	Start	End	E-Value	Type
ALBUMIN	20	205	3.69e-55	SMART
ALBUMIN	212	397	6.42e-64	SMART

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.7%
20x: 93.7%

Validation Efficiency

100% (68/68)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the albumin gene family, which is comprised of four genes that localize to chromosome 4 in a tandem arrangement. These four genes encode structurally-related serum transport proteins that are known to be evolutionarily related. The protein encoded by this gene is regulated developmentally, expressed in the liver and secreted into the bloodstream. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A1bg	T	G	15: 60,919,633 (GRCm38)		probably benign	Het
Abcg4	T	G	9: 44,277,649 (GRCm38)		probably benign	Het
Ahrr	G	A	13: 74,283,024 (GRCm38)		probably benign	Het
Aplnr	T	A	2: 85,137,276 (GRCm38)		probably null	Het
Arih2	T	A	9: 108,611,727 (GRCm38)	H264L	probably damaging	Het
Atp1a1	A	T	3: 101,579,835 (GRCm38)	I886N	possibly damaging	Het
Bmf	A	T	2: 118,549,622 (GRCm38)	V14E	probably damaging	Het
Ccdc116	T	C	16: 17,144,039 (GRCm38)	E15G	probably damaging	Het
Ccdc175	T	C	12: 72,135,965 (GRCm38)	N427D	possibly damaging	Het
Cfap53	A	G	18: 74,299,176 (GRCm38)	H45R	probably benign	Het
Chd3	A	G	11: 69,349,906 (GRCm38)	L1569P	probably damaging	Het
Cntn2	G	A	1: 132,516,180 (GRCm38)	Q457*	probably null	Het
Coro1a	A	T	7: 126,701,413 (GRCm38)		probably benign	Het
Cracr2b	T	A	7: 141,463,759 (GRCm38)	L91Q	probably damaging	Het
Ctdspl	T	C	9: 119,020,046 (GRCm38)		probably null	Het
Dip2b	T	A	15: 100,169,312 (GRCm38)	L565Q	probably damaging	Het
Dip2c	T	A	13: 9,621,903 (GRCm38)	C1004S	probably damaging	Het
Dnah11	A	T	12: 118,045,522 (GRCm38)	I2135N	possibly damaging	Het
Dnah14	A	G	1: 181,769,407 (GRCm38)		probably benign	Het
Dnase1	T	C	16: 4,038,946 (GRCm38)	V147A	probably damaging	Het
Dusp8	T	C	7: 142,082,054 (GRCm38)		probably benign	Het
Fer1l6	T	C	15: 58,662,787 (GRCm38)	Y1828H	probably damaging	Het
Flvcr1	A	G	1: 191,008,191 (GRCm38)	V544A	probably benign	Het
Fsd1l	T	C	4: 53,687,209 (GRCm38)	V311A	probably benign	Het
Glud1	G	A	14: 34,334,268 (GRCm38)	G300S	probably benign	Het
Gm4847	C	T	1: 166,630,486 (GRCm38)	V433I	probably benign	Het
Gstm3	T	G	3: 107,967,840 (GRCm38)	Y62S	probably damaging	Het
Gtse1	C	T	15: 85,862,435 (GRCm38)	P151S	probably benign	Het
Herc2	T	C	7: 56,207,812 (GRCm38)	S4048P	probably benign	Het
Hp1bp3	T	A	4: 138,221,683 (GRCm38)	I19K	probably benign	Het
Htr7	C	A	19: 36,041,540 (GRCm38)		probably benign	Het
Il1a	C	T	2: 129,309,074 (GRCm38)	D10N	probably damaging	Het
Il22ra2	A	T	10: 19,624,458 (GRCm38)	N39I	probably damaging	Het
Kcnn4	T	C	7: 24,379,255 (GRCm38)	C267R	possibly damaging	Het
Larp1	A	G	11: 58,055,473 (GRCm38)	K879R	possibly damaging	Het
Lcn5	T	A	2: 25,661,405 (GRCm38)		probably benign	Het
Lep	T	A	6: 29,068,972 (GRCm38)	C7*	probably null	Het
Magi2	A	T	5: 20,611,055 (GRCm38)	Y747F	probably benign	Het
Mast4	T	C	13: 102,742,058 (GRCm38)	T1223A	probably damaging	Het
Mcc	C	T	18: 44,445,933 (GRCm38)	E803K	probably damaging	Het
Mtmr4	T	C	11: 87,611,508 (GRCm38)	I796T	probably benign	Het
Myef2	A	T	2: 125,108,978 (GRCm38)	D312E	probably benign	Het
Myl3	A	C	9: 110,767,929 (GRCm38)	D119A	probably damaging	Het
Myo19	T	A	11: 84,888,169 (GRCm38)		probably null	Het
Naa15	T	G	3: 51,470,219 (GRCm38)	H763Q	probably damaging	Het
Pde5a	C	T	3: 122,824,902 (GRCm38)		probably benign	Het
Plpp2	C	T	10: 79,527,244 (GRCm38)	R184H	probably benign	Het
Rab19	T	G	6: 39,389,687 (GRCm38)	L179V	probably damaging	Het
Rims2	T	A	15: 39,534,966 (GRCm38)	M1087K	probably damaging	Het
Riox2	C	A	16: 59,489,367 (GRCm38)	D361E	probably benign	Het
Sh3rf1	T	A	8: 61,226,293 (GRCm38)	V123E	probably damaging	Het
Slc35e1	A	T	8: 72,484,709 (GRCm38)	N318K	probably damaging	Het
Slc9a2	A	T	1: 40,763,602 (GRCm38)	E604V	probably benign	Het
Srp72	T	C	5: 76,987,885 (GRCm38)	S221P	probably damaging	Het
Tbx19	A	T	1: 165,160,520 (GRCm38)	S15T	possibly damaging	Het
Tcea2	A	G	2: 181,685,817 (GRCm38)	T112A	probably benign	Het
Tesk1	T	A	4: 43,445,368 (GRCm38)	D230E	probably damaging	Het
Tm4sf5	C	T	11: 70,510,712 (GRCm38)	A179V	probably damaging	Het
Tnr	G	T	1: 159,852,416 (GRCm38)	G320V	probably damaging	Het
Trappc11	A	T	8: 47,503,320 (GRCm38)	C874S	possibly damaging	Het
Trpm3	T	A	19: 22,914,446 (GRCm38)	Y885N	probably damaging	Het
Unc5a	T	A	13: 55,002,879 (GRCm38)	C505S	probably damaging	Het
Vmn1r28	G	A	6: 58,265,717 (GRCm38)	A182T	probably benign	Het
Xpo5	T	C	17: 46,204,786 (GRCm38)		probably benign	Het
Zfp637	C	A	6: 117,845,668 (GRCm38)	H252Q	probably damaging	Het
Zfp646	T	A	7: 127,880,731 (GRCm38)	D693E	probably damaging	Het

Other mutations in Afm

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00911:Afm	APN	5	90,525,591 (GRCm38)	missense	probably benign	0.01
IGL01140:Afm	APN	5	90,524,867 (GRCm38)	missense	probably damaging	1.00
IGL01789:Afm	APN	5	90,525,584 (GRCm38)	missense	probably benign	0.32
IGL01819:Afm	APN	5	90,524,906 (GRCm38)	missense	probably benign	0.01
IGL01826:Afm	APN	5	90,524,928 (GRCm38)	splice site	probably benign
IGL01875:Afm	APN	5	90,548,883 (GRCm38)	utr 3 prime	probably benign
IGL02337:Afm	APN	5	90,547,911 (GRCm38)	missense	probably benign
IGL02902:Afm	APN	5	90,526,363 (GRCm38)	missense	possibly damaging	0.58
IGL02950:Afm	APN	5	90,531,607 (GRCm38)	missense	probably damaging	1.00
R0009:Afm	UTSW	5	90,545,384 (GRCm38)	splice site	probably benign
R0135:Afm	UTSW	5	90,550,322 (GRCm38)	missense	probably benign	0.00
R0582:Afm	UTSW	5	90,524,780 (GRCm38)	splice site	probably benign
R1416:Afm	UTSW	5	90,526,379 (GRCm38)	missense	possibly damaging	0.74
R1465:Afm	UTSW	5	90,550,341 (GRCm38)	missense	probably damaging	1.00
R1465:Afm	UTSW	5	90,550,341 (GRCm38)	missense	probably damaging	1.00
R1834:Afm	UTSW	5	90,526,424 (GRCm38)	missense	probably benign	0.01
R1919:Afm	UTSW	5	90,524,920 (GRCm38)	nonsense	probably null
R2071:Afm	UTSW	5	90,523,735 (GRCm38)	missense	probably benign	0.17
R2843:Afm	UTSW	5	90,526,465 (GRCm38)	nonsense	probably null
R2979:Afm	UTSW	5	90,522,163 (GRCm38)	missense	probably benign	0.19
R4853:Afm	UTSW	5	90,551,467 (GRCm38)	missense	probably damaging	1.00
R5400:Afm	UTSW	5	90,551,398 (GRCm38)	missense	possibly damaging	0.86
R5551:Afm	UTSW	5	90,531,652 (GRCm38)	missense	probably null	0.97
R5583:Afm	UTSW	5	90,547,881 (GRCm38)	missense	probably damaging	1.00
R5780:Afm	UTSW	5	90,551,431 (GRCm38)	missense	possibly damaging	0.87
R7378:Afm	UTSW	5	90,551,400 (GRCm38)	missense	probably benign	0.00
R7470:Afm	UTSW	5	90,531,627 (GRCm38)	missense	probably damaging	0.99
R7785:Afm	UTSW	5	90,550,173 (GRCm38)	missense	possibly damaging	0.93
R7799:Afm	UTSW	5	90,523,854 (GRCm38)	missense	probably benign	0.00
R7809:Afm	UTSW	5	90,524,816 (GRCm38)	missense	probably damaging	1.00
R7897:Afm	UTSW	5	90,547,868 (GRCm38)	missense	probably benign	0.00
R8236:Afm	UTSW	5	90,523,888 (GRCm38)	missense	probably damaging	1.00
R8497:Afm	UTSW	5	90,551,343 (GRCm38)	critical splice acceptor site	probably null
R8752:Afm	UTSW	5	90,552,565 (GRCm38)	missense	probably benign	0.00
R8949:Afm	UTSW	5	90,531,515 (GRCm38)	nonsense	probably null
R8971:Afm	UTSW	5	90,548,816 (GRCm38)	missense	probably damaging	0.99
R9013:Afm	UTSW	5	90,523,735 (GRCm38)	missense	probably damaging	0.99
R9067:Afm	UTSW	5	90,523,815 (GRCm38)	missense	probably benign	0.01
R9082:Afm	UTSW	5	90,550,236 (GRCm38)	missense	probably damaging	1.00
R9335:Afm	UTSW	5	90,550,227 (GRCm38)	missense	probably damaging	1.00
X0022:Afm	UTSW	5	90,545,414 (GRCm38)	missense	probably damaging	1.00
Z1177:Afm	UTSW	5	90,531,616 (GRCm38)	missense	probably damaging	1.00
Z1177:Afm	UTSW	5	90,531,506 (GRCm38)	missense	probably benign	0.07
Z1177:Afm	UTSW	5	90,521,946 (GRCm38)	missense	probably benign	0.05
Z1177:Afm	UTSW	5	90,551,383 (GRCm38)	missense	possibly damaging	0.87

Predicted Primers

PCR Primer
(F):5'- GGGAACAAGAGCCGACATTCTCAC -3'
(R):5'- GTTTATGGGACCTACCACATGGCG -3'

Sequencing Primer
(F):5'- ATGCAGTGCCTATGACACGTC -3'
(R):5'- ACATGGCGGTAACAACCTG -3'

Posted On

2013-05-23