Incidental Mutation 'R0009:Vmn1r28'
ID 40468
Institutional Source Beutler Lab
Gene Symbol Vmn1r28
Ensembl Gene ENSMUSG00000115705
Gene Name vomeronasal 1 receptor 28
Synonyms V1rc25
MMRRC Submission 038304-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.120) question?
Stock # R0009 (G1)
Quality Score 225
Status Validated
Chromosome 6
Chromosomal Location 58239279-58243645 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 58242702 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Alanine to Threonine at position 182 (A182T)
Ref Sequence ENSEMBL: ENSMUSP00000153785 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000176874] [ENSMUST00000226813] [ENSMUST00000227805] [ENSMUST00000228678]
AlphaFold Q8R2C9
Predicted Effect probably benign
Transcript: ENSMUST00000176874
AA Change: A182T

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000135311
Gene: ENSMUSG00000094291
AA Change: A182T

DomainStartEndE-ValueType
Pfam:V1R 28 293 8.4e-59 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000226813
AA Change: A182T

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Predicted Effect probably benign
Transcript: ENSMUST00000227805
AA Change: A182T

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Predicted Effect probably benign
Transcript: ENSMUST00000228678
AA Change: A182T

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.7%
  • 20x: 93.7%
Validation Efficiency 100% (68/68)
Allele List at MGI
Other mutations in this stock
Total: 66 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A1bg T G 15: 60,791,482 (GRCm39) probably benign Het
Abcg4 T G 9: 44,188,946 (GRCm39) probably benign Het
Afm C A 5: 90,693,243 (GRCm39) probably benign Het
Ahrr G A 13: 74,431,143 (GRCm39) probably benign Het
Aplnr T A 2: 84,967,620 (GRCm39) probably null Het
Arih2 T A 9: 108,488,926 (GRCm39) H264L probably damaging Het
Atp1a1 A T 3: 101,487,151 (GRCm39) I886N possibly damaging Het
Bmf A T 2: 118,380,103 (GRCm39) V14E probably damaging Het
Ccdc116 T C 16: 16,961,903 (GRCm39) E15G probably damaging Het
Ccdc175 T C 12: 72,182,739 (GRCm39) N427D possibly damaging Het
Cfap53 A G 18: 74,432,247 (GRCm39) H45R probably benign Het
Chd3 A G 11: 69,240,732 (GRCm39) L1569P probably damaging Het
Cntn2 G A 1: 132,443,918 (GRCm39) Q457* probably null Het
Coro1a A T 7: 126,300,585 (GRCm39) probably benign Het
Cracr2b T A 7: 141,043,672 (GRCm39) L91Q probably damaging Het
Ctdspl T C 9: 118,849,114 (GRCm39) probably null Het
Dip2b T A 15: 100,067,193 (GRCm39) L565Q probably damaging Het
Dip2c T A 13: 9,671,939 (GRCm39) C1004S probably damaging Het
Dnah11 A T 12: 118,009,257 (GRCm39) I2135N possibly damaging Het
Dnah14 A G 1: 181,596,972 (GRCm39) probably benign Het
Dnase1 T C 16: 3,856,810 (GRCm39) V147A probably damaging Het
Dusp8 T C 7: 141,635,791 (GRCm39) probably benign Het
Fer1l6 T C 15: 58,534,636 (GRCm39) Y1828H probably damaging Het
Flvcr1 A G 1: 190,740,388 (GRCm39) V544A probably benign Het
Fsd1l T C 4: 53,687,209 (GRCm39) V311A probably benign Het
Glud1 G A 14: 34,056,225 (GRCm39) G300S probably benign Het
Gm4847 C T 1: 166,458,055 (GRCm39) V433I probably benign Het
Gstm3 T G 3: 107,875,156 (GRCm39) Y62S probably damaging Het
Gtse1 C T 15: 85,746,636 (GRCm39) P151S probably benign Het
Herc2 T C 7: 55,857,560 (GRCm39) S4048P probably benign Het
Hp1bp3 T A 4: 137,948,994 (GRCm39) I19K probably benign Het
Htr7 C A 19: 36,018,940 (GRCm39) probably benign Het
Il1a C T 2: 129,150,994 (GRCm39) D10N probably damaging Het
Il22ra2 A T 10: 19,500,206 (GRCm39) N39I probably damaging Het
Kcnn4 T C 7: 24,078,680 (GRCm39) C267R possibly damaging Het
Larp1 A G 11: 57,946,299 (GRCm39) K879R possibly damaging Het
Lcn5 T A 2: 25,551,417 (GRCm39) probably benign Het
Lep T A 6: 29,068,971 (GRCm39) C7* probably null Het
Magi2 A T 5: 20,816,053 (GRCm39) Y747F probably benign Het
Mast4 T C 13: 102,878,566 (GRCm39) T1223A probably damaging Het
Mcc C T 18: 44,579,000 (GRCm39) E803K probably damaging Het
Mtmr4 T C 11: 87,502,334 (GRCm39) I796T probably benign Het
Myef2 A T 2: 124,950,898 (GRCm39) D312E probably benign Het
Myl3 A C 9: 110,596,997 (GRCm39) D119A probably damaging Het
Myo19 T A 11: 84,778,995 (GRCm39) probably null Het
Naa15 T G 3: 51,377,640 (GRCm39) H763Q probably damaging Het
Pde5a C T 3: 122,618,551 (GRCm39) probably benign Het
Plpp2 C T 10: 79,363,078 (GRCm39) R184H probably benign Het
Rab19 T G 6: 39,366,621 (GRCm39) L179V probably damaging Het
Rims2 T A 15: 39,398,362 (GRCm39) M1087K probably damaging Het
Riox2 C A 16: 59,309,730 (GRCm39) D361E probably benign Het
Sh3rf1 T A 8: 61,679,327 (GRCm39) V123E probably damaging Het
Slc35e1 A T 8: 73,238,553 (GRCm39) N318K probably damaging Het
Slc9a2 A T 1: 40,802,762 (GRCm39) E604V probably benign Het
Srp72 T C 5: 77,135,732 (GRCm39) S221P probably damaging Het
Tbx19 A T 1: 164,988,089 (GRCm39) S15T possibly damaging Het
Tcea2 A G 2: 181,327,610 (GRCm39) T112A probably benign Het
Tesk1 T A 4: 43,445,368 (GRCm39) D230E probably damaging Het
Tm4sf5 C T 11: 70,401,538 (GRCm39) A179V probably damaging Het
Tnr G T 1: 159,679,986 (GRCm39) G320V probably damaging Het
Trappc11 A T 8: 47,956,355 (GRCm39) C874S possibly damaging Het
Trpm3 T A 19: 22,891,810 (GRCm39) Y885N probably damaging Het
Unc5a T A 13: 55,150,692 (GRCm39) C505S probably damaging Het
Xpo5 T C 17: 46,515,712 (GRCm39) probably benign Het
Zfp637 C A 6: 117,822,629 (GRCm39) H252Q probably damaging Het
Zfp646 T A 7: 127,479,903 (GRCm39) D693E probably damaging Het
Other mutations in Vmn1r28
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01365:Vmn1r28 APN 6 58,242,176 (GRCm39) missense possibly damaging 0.76
IGL01712:Vmn1r28 APN 6 58,242,393 (GRCm39) missense probably benign 0.00
IGL01788:Vmn1r28 APN 6 58,242,522 (GRCm39) missense probably benign 0.00
IGL02629:Vmn1r28 APN 6 58,242,801 (GRCm39) missense probably benign 0.00
R0001:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0040:Vmn1r28 UTSW 6 58,242,879 (GRCm39) missense probably damaging 1.00
R0078:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0079:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0081:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0164:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0164:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0165:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0166:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0167:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0172:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0173:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0284:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0288:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0704:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R1143:Vmn1r28 UTSW 6 58,242,727 (GRCm39) missense probably benign 0.00
R1225:Vmn1r28 UTSW 6 58,242,951 (GRCm39) nonsense probably null
R1464:Vmn1r28 UTSW 6 58,242,217 (GRCm39) missense probably benign 0.05
R1464:Vmn1r28 UTSW 6 58,242,217 (GRCm39) missense probably benign 0.05
R1836:Vmn1r28 UTSW 6 58,242,237 (GRCm39) missense probably damaging 0.98
R1882:Vmn1r28 UTSW 6 58,242,963 (GRCm39) missense probably benign
R1905:Vmn1r28 UTSW 6 58,242,912 (GRCm39) missense probably benign 0.01
R4912:Vmn1r28 UTSW 6 58,242,525 (GRCm39) missense possibly damaging 0.86
R5071:Vmn1r28 UTSW 6 58,242,894 (GRCm39) missense probably benign 0.25
R5113:Vmn1r28 UTSW 6 58,242,843 (GRCm39) missense probably benign 0.12
R5261:Vmn1r28 UTSW 6 58,242,524 (GRCm39) missense probably benign 0.02
R5265:Vmn1r28 UTSW 6 58,242,949 (GRCm39) missense probably damaging 0.98
R5839:Vmn1r28 UTSW 6 58,242,280 (GRCm39) missense possibly damaging 0.94
R6180:Vmn1r28 UTSW 6 58,242,476 (GRCm39) missense probably damaging 0.99
R6643:Vmn1r28 UTSW 6 58,242,945 (GRCm39) missense probably benign 0.17
R6884:Vmn1r28 UTSW 6 58,242,633 (GRCm39) missense probably benign 0.03
R7393:Vmn1r28 UTSW 6 58,242,574 (GRCm39) missense possibly damaging 0.81
R7471:Vmn1r28 UTSW 6 58,242,850 (GRCm39) nonsense probably null
R7738:Vmn1r28 UTSW 6 58,243,039 (GRCm39) missense probably benign 0.00
R7961:Vmn1r28 UTSW 6 58,242,178 (GRCm39) missense probably benign
R8009:Vmn1r28 UTSW 6 58,242,178 (GRCm39) missense probably benign
R8156:Vmn1r28 UTSW 6 58,242,183 (GRCm39) missense probably damaging 1.00
R8167:Vmn1r28 UTSW 6 58,243,052 (GRCm39) missense noncoding transcript
R8879:Vmn1r28 UTSW 6 58,242,669 (GRCm39) missense probably benign 0.05
R9639:Vmn1r28 UTSW 6 58,242,996 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- TGTCACAATCAGTCCCAGTACCTCC -3'
(R):5'- ACACTACCAACAGCAAGATGGTCTG -3'

Sequencing Primer
(F):5'- GGTTTTACCAATGTGAGTGAGACC -3'
(R):5'- CAGCAAGATGGTCTGGGTGG -3'
Posted On 2013-05-23