Incidental Mutation 'R5295:Gad1-ps'
| ID |
405364 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Gad1-ps
|
| Ensembl Gene |
ENSMUSG00000090665 |
| Gene Name |
glutamate decarboxylase 1, pseudogene |
| Synonyms |
Gad-1ps |
| MMRRC Submission |
042878-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.208)
|
| Stock # |
R5295 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
10 |
| Chromosomal Location |
99279906-99281681 bp(+) (GRCm39) |
| Type of Mutation |
exon |
| DNA Base Change (assembly) |
A to G
at 99280751 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Gene Model |
predicted gene model for transcript(s):
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000167243
|
| SMART Domains |
Protein: ENSMUSP00000133048
Gene: ENSMUSG00000090665
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Pyridoxal_deC
|
1 |
368 |
4.3e-153 |
PFAM |
|
Pfam:Beta_elim_lyase
|
91 |
436 |
7.3e-8 |
PFAM |
|
Pfam:Aminotran_5
|
130 |
370 |
4.7e-7 |
PFAM |
|
| Meta Mutation Damage Score |
0.5596 |
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 97.4%
- 20x: 95.7%
|
| Validation Efficiency |
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 39 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Alpk2 |
C |
T |
18: 65,438,109 (GRCm39) |
E1095K |
probably damaging |
Het |
| Alpl |
T |
C |
4: 137,476,919 (GRCm39) |
T245A |
probably benign |
Het |
| Ank2 |
T |
C |
3: 126,825,832 (GRCm39) |
H378R |
probably damaging |
Het |
| Arhgef1 |
G |
A |
7: 24,618,777 (GRCm39) |
|
probably null |
Het |
| Atp5f1c |
T |
C |
2: 10,073,544 (GRCm39) |
R10G |
possibly damaging |
Het |
| Cbln3 |
T |
C |
14: 56,120,920 (GRCm39) |
|
probably null |
Het |
| Ccr10 |
C |
T |
11: 101,065,111 (GRCm39) |
V140M |
possibly damaging |
Het |
| Cep135 |
T |
A |
5: 76,741,051 (GRCm39) |
H42Q |
possibly damaging |
Het |
| Commd5 |
C |
A |
15: 76,785,152 (GRCm39) |
T183K |
possibly damaging |
Het |
| Dnajc16 |
T |
C |
4: 141,495,239 (GRCm39) |
E493G |
possibly damaging |
Het |
| Ears2 |
T |
C |
7: 121,647,421 (GRCm39) |
R288G |
probably damaging |
Het |
| Elovl4 |
G |
A |
9: 83,662,714 (GRCm39) |
P273L |
possibly damaging |
Het |
| Fam186b |
T |
A |
15: 99,181,755 (GRCm39) |
I148F |
probably damaging |
Het |
| Fryl |
T |
C |
5: 73,270,134 (GRCm39) |
Y79C |
probably damaging |
Het |
| Gm14325 |
G |
A |
2: 177,474,777 (GRCm39) |
H102Y |
possibly damaging |
Het |
| Ighv1-77 |
T |
A |
12: 115,825,528 (GRCm39) |
S104C |
probably damaging |
Het |
| Kcnv1 |
T |
C |
15: 44,977,987 (GRCm39) |
D17G |
unknown |
Het |
| Lmtk3 |
G |
A |
7: 45,440,722 (GRCm39) |
D243N |
probably damaging |
Het |
| Lrrc7 |
T |
A |
3: 157,876,376 (GRCm39) |
K571N |
probably damaging |
Het |
| Lsm7 |
T |
C |
10: 80,690,454 (GRCm39) |
E32G |
probably damaging |
Het |
| Ly6f |
A |
G |
15: 75,143,488 (GRCm39) |
Q65R |
probably benign |
Het |
| Perm1 |
T |
C |
4: 156,301,975 (GRCm39) |
L173P |
probably benign |
Het |
| Plvap |
T |
C |
8: 71,964,314 (GRCm39) |
Q16R |
probably benign |
Het |
| Prb1c |
T |
G |
6: 132,338,840 (GRCm39) |
Q126P |
unknown |
Het |
| Prl7d1 |
A |
T |
13: 27,893,230 (GRCm39) |
V227D |
probably damaging |
Het |
| Prss54 |
T |
C |
8: 96,291,106 (GRCm39) |
T165A |
probably damaging |
Het |
| Psrc1 |
A |
G |
3: 108,293,675 (GRCm39) |
I195V |
probably benign |
Het |
| Rnf123 |
AT |
ATT |
9: 107,941,202 (GRCm39) |
|
probably null |
Het |
| Rnf213 |
A |
T |
11: 119,331,642 (GRCm39) |
T2284S |
probably benign |
Het |
| Serpina3c |
T |
C |
12: 104,114,637 (GRCm39) |
E333G |
probably damaging |
Het |
| Serpinb6c |
A |
G |
13: 34,077,800 (GRCm39) |
F190S |
probably damaging |
Het |
| Sfmbt1 |
G |
A |
14: 30,495,986 (GRCm39) |
D90N |
probably damaging |
Het |
| Tdh |
T |
C |
14: 63,733,558 (GRCm39) |
Y110C |
probably damaging |
Het |
| Tdrd9 |
T |
A |
12: 112,018,346 (GRCm39) |
L1255* |
probably null |
Het |
| Trim41 |
TTCCTCCTCCTCCTCCTCCTCCTCCTCC |
TTCCTCCTCCTCCTCCTCCTCCTCC |
11: 48,707,084 (GRCm39) |
|
probably benign |
Het |
| Vps51 |
T |
G |
19: 6,121,063 (GRCm39) |
E283D |
probably benign |
Het |
| Zbtb2 |
T |
C |
10: 4,318,508 (GRCm39) |
K506R |
probably damaging |
Het |
| Zmiz1 |
T |
C |
14: 25,656,771 (GRCm39) |
L800P |
probably damaging |
Het |
| Znhit6 |
A |
G |
3: 145,306,248 (GRCm39) |
D251G |
probably benign |
Het |
|
| Other mutations in Gad1-ps |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00963:Gad1-ps
|
APN |
10 |
99,281,310 (GRCm39) |
exon |
noncoding transcript |
|
|
IGL01301:Gad1-ps
|
APN |
10 |
99,281,013 (GRCm39) |
exon |
noncoding transcript |
|
|
IGL01394:Gad1-ps
|
APN |
10 |
99,281,424 (GRCm39) |
exon |
noncoding transcript |
|
|
IGL02220:Gad1-ps
|
APN |
10 |
99,281,184 (GRCm39) |
exon |
noncoding transcript |
|
|
IGL02240:Gad1-ps
|
APN |
10 |
99,280,820 (GRCm39) |
exon |
noncoding transcript |
|
|
IGL03406:Gad1-ps
|
APN |
10 |
99,280,641 (GRCm39) |
exon |
noncoding transcript |
|
|
ANU18:Gad1-ps
|
UTSW |
10 |
99,281,013 (GRCm39) |
exon |
noncoding transcript |
|
|
R0305:Gad1-ps
|
UTSW |
10 |
99,280,665 (GRCm39) |
exon |
noncoding transcript |
|
|
R0446:Gad1-ps
|
UTSW |
10 |
99,281,383 (GRCm39) |
exon |
noncoding transcript |
|
|
R0538:Gad1-ps
|
UTSW |
10 |
99,280,854 (GRCm39) |
exon |
noncoding transcript |
|
|
R1511:Gad1-ps
|
UTSW |
10 |
99,281,331 (GRCm39) |
exon |
noncoding transcript |
|
|
R1734:Gad1-ps
|
UTSW |
10 |
99,281,637 (GRCm39) |
exon |
noncoding transcript |
|
|
R1745:Gad1-ps
|
UTSW |
10 |
99,281,386 (GRCm39) |
exon |
noncoding transcript |
|
|
R1886:Gad1-ps
|
UTSW |
10 |
99,281,444 (GRCm39) |
exon |
noncoding transcript |
|
|
R3111:Gad1-ps
|
UTSW |
10 |
99,280,383 (GRCm39) |
exon |
noncoding transcript |
|
|
R3617:Gad1-ps
|
UTSW |
10 |
99,281,260 (GRCm39) |
exon |
noncoding transcript |
|
|
R5042:Gad1-ps
|
UTSW |
10 |
99,281,516 (GRCm39) |
exon |
noncoding transcript |
|
|
R5223:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
|
R5234:Gad1-ps
|
UTSW |
10 |
99,281,188 (GRCm39) |
exon |
noncoding transcript |
|
|
R5275:Gad1-ps
|
UTSW |
10 |
99,280,751 (GRCm39) |
exon |
noncoding transcript |
|
|
R5334:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
|
R5335:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
|
R5336:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
|
R5337:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
|
R5396:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
|
R5397:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
|
R5399:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
|
R5428:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
|
R5429:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
|
R5431:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
|
R5661:Gad1-ps
|
UTSW |
10 |
99,280,901 (GRCm39) |
exon |
noncoding transcript |
|
|
R5667:Gad1-ps
|
UTSW |
10 |
99,280,395 (GRCm39) |
exon |
noncoding transcript |
|
|
R5671:Gad1-ps
|
UTSW |
10 |
99,280,395 (GRCm39) |
exon |
noncoding transcript |
|
|
R5885:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
|
R5886:Gad1-ps
|
UTSW |
10 |
99,281,009 (GRCm39) |
exon |
noncoding transcript |
|
|
| Predicted Primers |
PCR Primer
(F):5'- ACCCGTGTTTGTTCTCATGG -3'
(R):5'- TCAAAAGCTCCGTAAACAGTCG -3'
Sequencing Primer
(F):5'- TGGAACAGATCACACTTAAGAAGATG -3'
(R):5'- TCCGTAAACAGTCGTGCCTG -3'
|
| Posted On |
2016-07-22 |
Incidental Mutation